mRNA_F-serratus_M_contig818.19582.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig818.19582.1
Unique NamemRNA_F-serratus_M_contig818.19582.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig818.19582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig818contigF-serratus_M_contig818:38129..39090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig818.19582.1prot_F-serratus_M_contig818.19582.1Fucus serratus malepolypeptideF-serratus_M_contig818 38192..39022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.6954062-UTR-F-serratus_M_contig818:38128..381911622932434.6954062-UTR-F-serratus_M_contig818:38128..38191Fucus serratus maleUTRF-serratus_M_contig818 38129..38191 +
1690964307.4507372-UTR-F-serratus_M_contig818:38128..381911690964307.4507372-UTR-F-serratus_M_contig818:38128..38191Fucus serratus maleUTRF-serratus_M_contig818 38129..38191 +
1622932434.7382808-UTR-F-serratus_M_contig818:39022..390901622932434.7382808-UTR-F-serratus_M_contig818:39022..39090Fucus serratus maleUTRF-serratus_M_contig818 39023..39090 +
1690964307.49156-UTR-F-serratus_M_contig818:39022..390901690964307.49156-UTR-F-serratus_M_contig818:39022..39090Fucus serratus maleUTRF-serratus_M_contig818 39023..39090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.7119336-CDS-F-serratus_M_contig818:38191..382651622932434.7119336-CDS-F-serratus_M_contig818:38191..38265Fucus serratus maleCDSF-serratus_M_contig818 38192..38265 +
1690964307.4628649-CDS-F-serratus_M_contig818:38191..382651690964307.4628649-CDS-F-serratus_M_contig818:38191..38265Fucus serratus maleCDSF-serratus_M_contig818 38192..38265 +
1622932434.724657-CDS-F-serratus_M_contig818:38961..390221622932434.724657-CDS-F-serratus_M_contig818:38961..39022Fucus serratus maleCDSF-serratus_M_contig818 38962..39022 +
1690964307.4786904-CDS-F-serratus_M_contig818:38961..390221690964307.4786904-CDS-F-serratus_M_contig818:38961..39022Fucus serratus maleCDSF-serratus_M_contig818 38962..39022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig818.19582.1

>prot_F-serratus_M_contig818.19582.1 ID=prot_F-serratus_M_contig818.19582.1|Name=mRNA_F-serratus_M_contig818.19582.1|organism=Fucus serratus male|type=polypeptide|length=45bp
MRWREDSRSGYKSLSTVATQPAQERPCFKTLSTIRWLCRKLCRK*
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mRNA from alignment at F-serratus_M_contig818:38129..39090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig818.19582.1 ID=mRNA_F-serratus_M_contig818.19582.1|Name=mRNA_F-serratus_M_contig818.19582.1|organism=Fucus serratus male|type=mRNA|length=962bp|location=Sequence derived from alignment at F-serratus_M_contig818:38129..39090+ (Fucus serratus male)
CCGGGTGCTGAGGAGCCGACCGCCACCAGAGGACCTGTCAGCTTCCGCCG
GTGGTGGCCGCGGATGCGCTGGCGTGAAGACTCGAGGTCTGGCTACAAAA
GCTTATCGACGGTGGCGACTCAGCCAGCACAAGAGAGGTGACGTTCATAA
TTTGTGAAAAAAATAAACATCGCGACACACGGTGGCATGTTCTTGTGTTA
TTACAAAGGCCCCCTCCAATGTGTGACGCTCCCCTTTTTTCTGCTTCTGA
ACCGAAAGATTCGAGATCTTCCTCGGGATCGAGTCACGCCTATCGGCGGT
AGAAGGACCGCGGGTGGCACAGCCTCTGATGTTCAACACGACCCATCCGA
GCGCTACGTAGAGACATCGATTCTATGATATTAATAGGAGAATATAGTTA
TTAATATTATATATACTAAATACATAAAAAAATAAAGAAGGGTTGCAGCA
GCGGCTCTCAATAATTTGTGTACACCCTACGGTGTTATGTTTTGCAACTA
TTTTAACTTTATATTGAGACCTCCAGGATCGCGCAATACTTTTCTCTGGC
GGCATGCCCTTATTGTATTACGGAGTATATATTATCTAGTACTCCGTATA
TAACATTCGTAGCAATAGCAATAGCAATAGGGGGCGGACATAGAGGGAAA
GGCTGAAAATCGAGATGCACTTTTAACGGCAAGGGTACTTGCAGGAAATG
GATATCGATTTGCTTCGACGTGGACACAGAACGAGCTCGGTTATGATGGT
ACGGTTGGGTAGCCCCTCTCATCTATTCCTTCCTGGCCGTGTTTTACCGT
CCCTTACTGTACCGTCTAATTGTCTTGAAATAGGCCATGTTTCAAGACCC
TGAGTACCATACGTTGGCTGTGCCGGAAGCTGTGCCGGAAGTGAAGAAAA
ACCGGTGGCTCAAGCGGGCGAATCGAGCCGCCGGGCACGCCCCTGTAACG
TCGAGCGGAACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig818:38129..39090+

>mRNA_F-serratus_M_contig818.19582.1 ID=mRNA_F-serratus_M_contig818.19582.1|Name=mRNA_F-serratus_M_contig818.19582.1|organism=Fucus serratus male|type=CDS|length=270bp|location=Sequence derived from alignment at F-serratus_M_contig818:38129..39090+ (Fucus serratus male)
ATGCGCTGGCGTGAAGACTCGAGGTCTGGCTACAAAAGCTTATCGACGGT
GGCGACTCAGCCAGCACAAGAGAGATGCGCTGGCGTGAAGACTCGAGGTC
TGGCTACAAAAGCTTATCGACGGTGGCGACTCAGCCAGCACAAGAGAGGC
CATGTTTCAAGACCCTGAGTACCATACGTTGGCTGTGCCGGAAGCTGTGC
CGGAAGTGAGCCATGTTTCAAGACCCTGAGTACCATACGTTGGCTGTGCC
GGAAGCTGTGCCGGAAGTGA
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