mRNA_F-serratus_M_contig8160.19577.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8160.19577.1
Unique NamemRNA_F-serratus_M_contig8160.19577.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: D8LBM5_ECTSI (Similar to 20S proteasome alpha5 subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM5_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.300e-106
Identity = 172/234 (73.50%), Postives = 196/234 (83.76%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDID-ACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQ-WLRQRRKPRSSKEEADGG--AMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGD-EFCEDRLEMVCVDLSEGDTDLGE 736
            SPDGSIYQ+EYA++AADKGGLTIGVQTD+GLVLAA GRRRSPLLK+SSV KI D+D   + CAMSGLLPDGR+L+DYARTWVQEHRFEFDEAPSVEAVAS LS+LALKF  + +  +     +EE DGG  AM+RPVGVALLMAGVDRG+RPVLYHLDPSGAY+QWRA+AIG+KGAAAEA LE  GP+  M+VRRAM  VL VL+EVLGD EF  DRLEMVCVD+  G    G+
Sbjct:   44 SPDGSIYQVEYAVEAADKGGLTIGVQTDKGLVLAAHGRRRSPLLKASSVSKIADVDDGRMCCAMSGLLPDGRLLLDYARTWVQEHRFEFDEAPSVEAVASQLSRLALKFNGYDKDGKAGNGGREEEDGGGPAMSRPVGVALLMAGVDRGDRPVLYHLDPSGAYVQWRARAIGDKGAAAEAKLEGVGPFEGMSVRRAMAAVLGVLREVLGDDEFSTDRLEMVCVDMMGGGRGSGD 277          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A1D1XX99_9ARAE (Proteasome subunit alpha type (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XX99_9ARAE)

HSP 1 Score: 172 bits (435), Expect = 1.330e-49
Identity = 97/219 (44.29%), Postives = 135/219 (61.64%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G   +G+QT +G+VLAA+ R  SPLL SSS+ KI +ID  + CAMSGL  D R ++D+AR   Q HRF +DEA  VE+V   +  LAL+F              E +   M+RP GVALL+AGVD  N P L+H DPSG + Q+ AKAIG     A+  LE  G Y K +T+ +A  + L+VLK+V+ ++     +E+  V
Sbjct:   21 SPEGRLFQVEYAIEAIKLGSTAVGIQTSEGVVLAAEKRVTSPLLVSSSIEKIMEIDKHLGCAMSGLTADSRTMIDHARVAAQSHRFTYDEAIKVESVTQAVCDLALRF----------GESAEGEESIMSRPFGVALLIAGVDE-NGPQLFHADPSGTFTQFDAKAIGSGSEGAQTELE--GEYHKSITLEKAETLSLRVLKQVMEEKLNNTNVELASV 226          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: UPI001C7A0D83 (proteasome component pup2 n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A0D83)

HSP 1 Score: 171 bits (434), Expect = 1.630e-49
Identity = 91/223 (40.81%), Postives = 142/223 (63.68%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCVDLSEG 718
            SP+G ++Q+EYAI+A   G  T+G++TDQG+VLA + R +SPL++SSS+ KI +ID  + CAMSGL  D R ++D+AR   Q H F +DE   VE+V   +  LAL+F                +   M+RP GVALL+AG+D    P LYH DPSG +++++AKAIG    AA+A L++   Y +MT++ A ++ ++VLK+V+ ++  +  +++  V   +G
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTTLGIRTDQGVVLAVEKRVQSPLIESSSIEKIMEIDRHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRF----------GESVHDEDAMMSRPFGVALLIAGIDEVG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQEKW-YSQMTLQEANILAMRVLKQVMEEKLDQHNVQLAQVTPQKG 226          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A1Q3E886_LENED (Proteasome subunit alpha type n=4 Tax=Omphalotaceae TaxID=72117 RepID=A0A1Q3E886_LENED)

HSP 1 Score: 171 bits (434), Expect = 3.060e-49
Identity = 92/223 (41.26%), Postives = 140/223 (62.78%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCVDLSEG 718
            SP+G ++Q+EYAI+A   G  T+GV+TD+G+VL  + R +SPL++SSS+ KI +IDA + CAMSGL  D R ++D+AR   Q H F +DE   VE+V   +  LAL+F                +   M+RP GVALL+AG+D    P LYH DPSG +++++AKAIG    AA+A L+    + KMT+R A ++ L++LK+V+ ++     +++  V  + G
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTTVGVRTDEGVVLGVEKRVQSPLIESSSIEKIMEIDAHLGCAMSGLTADARTMIDHARVTAQNHSFTYDEKIKVESVTQAVCDLALRF----------GESVHDEDAMMSRPFGVALLIAGIDELG-PQLYHTDPSGTFVRYQAKAIGSGSEAAQAELQDKW-HSKMTLREAQLLTLRILKQVMEEKLDRHNVQLAQVTKANG 226          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: F6Z491_CIOIN (Proteasome subunit alpha type n=3 Tax=Ciona TaxID=7718 RepID=F6Z491_CIOIN)

HSP 1 Score: 171 bits (432), Expect = 3.250e-49
Identity = 90/218 (41.28%), Postives = 133/218 (61.01%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G   IG+QT  G+VLA + R  SPL+++SS+ K+ +ID  + CAMSGL+ D + ++D AR   Q H F FDE   V+++   +S LAL+F            +E+++ GAM+RP GVALL AG D G  P LYHLDPSG ++   AKAIG     A+  LE+   +  MT+  A   +L +LK+V+ ++     +E+  V
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTAIGIQTADGVVLAVEKRITSPLIEASSIEKVFEIDTHVGCAMSGLIADSKTMIDRARVEAQNHWFTFDEKMRVQSITKAVSNLALQF-----------GEEDSEPGAMSRPFGVALLFAGYDEGLGPQLYHLDPSGTFVSCSAKAIGSASEGAQTSLEEQF-HKSMTIEEAQKSILTILKQVMEEKLTSTNVEVATV 221          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A1Y2BW89_9BASI (Proteasome subunit alpha type (Fragment) n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BW89_9BASI)

HSP 1 Score: 171 bits (432), Expect = 3.450e-49
Identity = 96/219 (43.84%), Postives = 139/219 (63.47%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G  T+G+QT QG+VLA + R +SPLL S SV KI +ID+ ++CAMSGL  D R +V++AR   Q H F +DE   VE+V   +  LAL+F          + +EEA   +M+RP GVALL+AG D+   P LYH DPSG +M++ AKAIG     A+  L+    Y K MT+  A V+ L+VLK+V+ ++   + +++  V
Sbjct:   15 SPEGRLFQVEYAIEAIKLGSTTVGIQTSQGVVLAVEKRTQSPLLDSDSVEKIMEIDSHVACAMSGLTADARTMVEHARVTSQNHSFTYDEPIKVESVTQAVCDLALRF-------GEGADEEEA---SMSRPFGVALLIAGYDQSGGPQLYHADPSGTFMRYDAKAIGSGSEGAQNELQDS--YNKSMTLEEAQVLALKVLKQVMEEKLDHNNVQLAQV 221          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: E9HGR7_DAPPU (Proteasome subunit alpha type n=8 Tax=Mandibulata TaxID=197563 RepID=E9HGR7_DAPPU)

HSP 1 Score: 170 bits (431), Expect = 4.600e-49
Identity = 93/219 (42.47%), Postives = 136/219 (62.10%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G   IG+QT +G+VLA + R  SPL++ +++ KI +ID  I CA+SGL+ D R +VD AR   Q H F +DE  SVE+VA  +S LA++F              + DG AM+RP GVA+L AG+D    P L+H+DPSG Y+Q+ AKAIG     A+  L++   Y K MT++ AM   L +LK+V+ ++     +E+  V
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVVLAVEKRITSPLMEPTTIEKIVEIDKHIGCAVSGLMADSRTMVDRARVEAQNHWFTYDEKMSVESVAQAVSNLAIQF-----------GDSDDDGNAMSRPFGVAILFAGIDE-KGPQLFHMDPSGTYVQYDAKAIGSGSEGAQQSLQEA--YNKSMTLKSAMKAALTILKQVMEEKLSSTNVEVAAV 220          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A7M7ST72_STRPU (Proteasome subunit alpha type n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7ST72_STRPU)

HSP 1 Score: 170 bits (430), Expect = 6.310e-49
Identity = 90/218 (41.28%), Postives = 140/218 (64.22%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G   IG++T++G+VLA + R  SPL++++S+ KI +ID+ I CAMSGL+ D R ++D AR   Q H F ++E  SVE+V   +S LAL+F             +EA  GAM+RP GVALL AG+D+   P+LYH+DPSG ++Q+ AKAIG     A++ L++   +  +T++ A    L VLK+V+ ++     +E+  +
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTAIGIRTNEGIVLAVEKRVTSPLMEATSIEKIVEIDSHIGCAMSGLIADSRTMIDRARVEAQSHWFTYNEKMSVESVTQAVSNLALQF-----------GDDEAGSGAMSRPFGVALLFAGIDQ-KGPILYHMDPSGTFLQFDAKAIGSGSEGAQSQLQEVF-HKSLTLKEACKESLVVLKQVMEEKLSSTNVEVATI 220          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A8B7YRJ8_ACAPL (Proteasome subunit alpha type n=3 Tax=Asteroidea TaxID=7588 RepID=A0A8B7YRJ8_ACAPL)

HSP 1 Score: 169 bits (429), Expect = 8.920e-49
Identity = 92/219 (42.01%), Postives = 137/219 (62.56%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGK-MTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCV 703
            SP+G ++Q+EYAI+A   G   +G+QT +G VLA + R  SPL++S+S+ KI +ID+ I CAMSGL+ D R ++D AR   Q H F ++E  S+EAV   +  LA++F             ++AD GAM+RP GVALL AG+D    P L+H+DPSG Y+Q+ AKAIG     A++ L++   Y K MT++ A    L +LK+V+ ++     +E+  V
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTALGIQTSEGCVLAVEKRVTSPLMESTSIEKIVEIDSHIGCAMSGLIADSRTMIDRARVEAQSHWFTYNEKMSIEAVTQAVCNLAMQF-----------GDDDADSGAMSRPFGVALLFAGMDE-EGPRLFHMDPSGTYIQYEAKAIGSGSEGAQSQLQET--YHKSMTLKEACKEALVILKQVMEEKLSSTNVELATV 220          
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Match: A0A7J7JUL7_BUGNE (Proteasome subunit alpha type n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JUL7_BUGNE)

HSP 1 Score: 169 bits (429), Expect = 8.920e-49
Identity = 91/223 (40.81%), Postives = 139/223 (62.33%), Query Frame = 2
Query:   50 SPDGSIYQIEYAIQAADKGGLTIGVQTDQGLVLAAQGRRRSPLLKSSSVFKINDIDACISCAMSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLRQRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQWRAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDRLEMVCVDLSEG 718
            SP+G ++Q+EYAI+A   G   IG+QT +G+VLA + R  SPL+++ S+ KI ++D+ + CAMSGL+ D R L+D AR   Q H F +DE  SVE+V   +S LAL F             ++A+ GAM+RP GVALL AG+D  N P L+HLDPSG ++++ AKAIG     A+  L+    +  M +  A+  V+++LK+V+ ++     +E+  V  ++G
Sbjct:   16 SPEGRLFQVEYAIEAIKLGSTAIGLQTSEGVVLAVEKRVTSPLIEADSIEKIFEVDSHLGCAMSGLIADSRTLIDRARVEAQNHWFTYDEKMSVESVTQSVSNLALAF-----------GDDDAEPGAMSRPFGVALLFAGIDE-NGPQLFHLDPSGTFIRYDAKAIGSASEGAQQSLQDVF-HKSMNLETAIKEVMKILKQVMEEKLTSKNVELAIVTKADG 225          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8160.19577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM5_ECTSI1.300e-10673.50Similar to 20S proteasome alpha5 subunit n=2 Tax=E... [more]
A0A1D1XX99_9ARAE1.330e-4944.29Proteasome subunit alpha type (Fragment) n=1 Tax=A... [more]
UPI001C7A0D831.630e-4940.81proteasome component pup2 n=1 Tax=Marasmius oreade... [more]
A0A1Q3E886_LENED3.060e-4941.26Proteasome subunit alpha type n=4 Tax=Omphalotacea... [more]
F6Z491_CIOIN3.250e-4941.28Proteasome subunit alpha type n=3 Tax=Ciona TaxID=... [more]
A0A1Y2BW89_9BASI3.450e-4943.84Proteasome subunit alpha type (Fragment) n=1 Tax=L... [more]
E9HGR7_DAPPU4.600e-4942.47Proteasome subunit alpha type n=8 Tax=Mandibulata ... [more]
A0A7M7ST72_STRPU6.310e-4941.28Proteasome subunit alpha type n=2 Tax=Echinacea Ta... [more]
A0A8B7YRJ8_ACAPL8.920e-4942.01Proteasome subunit alpha type n=3 Tax=Asteroidea T... [more]
A0A7J7JUL7_BUGNE8.920e-4940.81Proteasome subunit alpha type n=1 Tax=Bugula nerit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8160contigF-serratus_M_contig8160:5780..9797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue3.8e-58
Seed eggNOG ortholog2880.D8LBM5
Preferred namePSMA5
KEGG koko:K02729,ko:K12388
KEGG TC9.A.63.1.3
KEGG Pathwayko03050,ko04142,ko04722,ko04979,map03050,map04142,map04722,map04979
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0030141,GO:0030163,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0060205,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1904813,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0176@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Exons4
Model size736
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8160.19577.1prot_F-serratus_M_contig8160.19577.1Fucus serratus malepolypeptideF-serratus_M_contig8160 5780..7530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.2199762-CDS-F-serratus_M_contig8160:5779..59971622932434.2199762-CDS-F-serratus_M_contig8160:5779..5997Fucus serratus maleCDSF-serratus_M_contig8160 5780..5997 -
1690964307.222424-CDS-F-serratus_M_contig8160:5779..59971690964307.222424-CDS-F-serratus_M_contig8160:5779..5997Fucus serratus maleCDSF-serratus_M_contig8160 5780..5997 -
1622932434.233364-CDS-F-serratus_M_contig8160:6855..70911622932434.233364-CDS-F-serratus_M_contig8160:6855..7091Fucus serratus maleCDSF-serratus_M_contig8160 6856..7091 -
1690964307.2400084-CDS-F-serratus_M_contig8160:6855..70911690964307.2400084-CDS-F-serratus_M_contig8160:6855..7091Fucus serratus maleCDSF-serratus_M_contig8160 6856..7091 -
1622932434.2484243-CDS-F-serratus_M_contig8160:7483..75301622932434.2484243-CDS-F-serratus_M_contig8160:7483..7530Fucus serratus maleCDSF-serratus_M_contig8160 7484..7530 -
1690964307.2537994-CDS-F-serratus_M_contig8160:7483..75301690964307.2537994-CDS-F-serratus_M_contig8160:7483..7530Fucus serratus maleCDSF-serratus_M_contig8160 7484..7530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932434.2763503-UTR-F-serratus_M_contig8160:7530..76921622932434.2763503-UTR-F-serratus_M_contig8160:7530..7692Fucus serratus maleUTRF-serratus_M_contig8160 7531..7692 -
1690964307.2697504-UTR-F-serratus_M_contig8160:7530..76921690964307.2697504-UTR-F-serratus_M_contig8160:7530..7692Fucus serratus maleUTRF-serratus_M_contig8160 7531..7692 -
1622932434.2948542-UTR-F-serratus_M_contig8160:9724..97971622932434.2948542-UTR-F-serratus_M_contig8160:9724..9797Fucus serratus maleUTRF-serratus_M_contig8160 9725..9797 -
1690964307.2796376-UTR-F-serratus_M_contig8160:9724..97971690964307.2796376-UTR-F-serratus_M_contig8160:9724..9797Fucus serratus maleUTRF-serratus_M_contig8160 9725..9797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8160.19577.1

>prot_F-serratus_M_contig8160.19577.1 ID=prot_F-serratus_M_contig8160.19577.1|Name=mRNA_F-serratus_M_contig8160.19577.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MSGLLPDGRMLVDYARTWVQEHRFEFDEAPSVEAVASHLSQLALKFQWLR
QRRKPRSSKEEADGGAMARPVGVALLMAGVDRGNRPVLYHLDPSGAYMQW
RAKAIGEKGAAAEAMLEKCGPYGKMTVRRAMVVVLQVLKEVLGDEFCEDR
LEMVCVDLSEGDTDLGE
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mRNA from alignment at F-serratus_M_contig8160:5780..9797-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8160.19577.1 ID=mRNA_F-serratus_M_contig8160.19577.1|Name=mRNA_F-serratus_M_contig8160.19577.1|organism=Fucus serratus male|type=mRNA|length=4018bp|location=Sequence derived from alignment at F-serratus_M_contig8160:5780..9797- (Fucus serratus male)
AAAGCACCAGTGCGAGAGAAGAAGGCGTATGACACGAACGTGAGGGGTTT CTCCCGACGGGAGCATCTATCAGGTACGTATCGTACAAATACTATGTCAA TATGTAGAAATTCAAGGACTACCTGTCCTAGTCCTGTACAAATATACTCT GGAGGTTTCAACCCTTTGACCCAACCGCGCTGTATTTATCGAAAAATCTT AACTCATCCATCCATACCTTCCTATAATAGCATCCACAAATCCCTGACTG GAGGATGCTCAGAAGGTATAGGCGCGTTCCGGTTTTTCTTGAAACTCTCT GCGGCGAACACCATCAGTGCACAATTGCTTGACCCAATAGACTTAAGGCT GGCCCGCTGACGGTTGGTGATATGGATGGATGCCGTAGCGGAAAGCGGGC ACCAGATTCAGCCTGGGATTGGAGAATGAGCGGGCTGACACGGGACAACA GACCGGCCTGACCTGTCTCGCGAGACTAATTTCTCAGGCGCGAACGGGGA CAGGAAAAAAACAAATTAAAATAATTTTCTCTGTCCAGCTGACCACGAGA AGGATGGACAGTCATACCCGGTTGATACCCAGTCTACTAAATGTGATGGA CCATACACATCGTCCCAGAGCAATCGTCCTGAAGCGTTTGGAAGGAACAA TGACTTTTAGAAAGATAGTATAATAACAGCAGATACGACGTGTACGATGG AAATCCTCTACCTCTCTTTTCTTGAAAGCAGGTGCGACGTCGCTCTCACG TGTAGCTACTGCCATCTCACTACTGTAACGTTTTGTTATATCTACAAAAG GTTTTCCGAAAGCTTTGAGCACCTCGTAAAGAGCTGTACTATTATAATGC ACAGCTGTAGTATTAATCATTTAAAGAAAAATCTGAATTCAGCAGTGTGT GTATGGTCACACATATAGCAAGAGTATGGATCAACCTAGTAAGGTTGCCA ATCCTGCTTGTGGTCAGCTGAACAGGAAAAAGAACATTCCCCTGTCCGCG TTCGTGTCTGAAAATTTGGTCTCGCGAGACAGTTTCGGCAGTCCCGCCCC GCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTAC AGTATGTATGTTTGGTCATGATATATAGCAAGAGAAAAATCAACCGGGTA AGGTTGCCAATCCTGCTCGTGTGTCAGCTGAACAGGGAAGAAAATTACTA TTTCCCTGTCCCCGTTCGCGCCTGAGAATTTGTCTCGCGAGACAGGTTCG GCAGTCTCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCT GGTGCTTACGTTCGAGATTCCTCCTGGAATTCCGCGGCGGCGTCCATTTA TTTTTTAAACCGCTATACGCCATCGGCTCGGTCCCGGAGTTTATCGGGTC ACGCACTTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGACACAGG GCCAGTAAACCTCAAGGCAGTTCCAAGCGGGTGCTTGCCTTGGCAGGTCA CCATGGACCAATAATTAATATGCGCCTCTTTTTTCCCCACCCACTGTTGG TATGAAGCGGACATGTTAAAAGTACCGGCGAAGTATAATGGATCAACTAC AACGTGTGTACCCATAGTTAGAGAGAGTCAAGCAGGGACGCACTGGCGCG GGTTCTTGTGGACACCGGTATTAATAGTTAGTTCTCAATTATGTACCACA CGACGTACAGCAATGCACAGCTACCGTTCGTACCGCAGTTGATCGGTGTT ATGCCCGTGCTTCGTTGACATATACTGGTAAATAGTACTCTAGCTGGGGG TTGGGGGGGGCACTTGGTGTTTCGAACCCCCACAAATTTGGGAAAAGCTG AAGCATCGTTCAACATTTTTACAGACGCAAAAATACCATTATAGCAATCA TAAAAATTGCCCTGCATACTGGAGACGTGGTAAGCCAGTCTTTTGTGGTA AACCGGTCTTTCCTGGGCATTTTACTTTGTTCGAAATTGCTTTGCGTGAC GAGTACCATGTTAAGGAATCGTCTCACTTCGAGTTCACCGATCGATCGAA GTTCAACTTTGTACTGACGGAAAACACCCTCCTCCTTCTCGACTACTTTA CGCAGATCGAATACGCCATCCAGGCCGCAGATAAGGGAGGCTTAACGATC GGCGTGCAGACGGACCAGGGACTCGTGCTCGCGGCGCAGGGTCGACGACG CTCACCGCTGCTGAAGAGCTCGTCGGTGTTCAAGATCAACGACATAGACG CCTGCATCTCCTGTGCCATGTCTGGGCTCCTCCCGGACGGTCGTATGTTG GTCGACTACGCGCGGTAAGTCTGTTGACGGTGTCCGAAGTATGGAACACA TAGGGAACATGGTAGCTGGCGGCAATTCGTCCCGCTTATGAAAAAGAAGT GTTCTGAGGTGTTTGGGGTGCTAACCTCCAGAAAAGTAGCGCTTGCAATC ATTATAATAGTAATATTGATCGGTTTTCTAACCGGGAATCGGTTTGACAG AAGATGTCATCGATGAAACCGTCGAGTGTTAAGGGTGAAGTTGACCTATT TGAGTACCAGCATGTGTTTGCCTGCGTCGACTGCGCCGTAATGCGCAATC ATCACTCAAGTGCAACTCCACGCCGCGCTTCTCCTTCGGGTTGCAGTTTT AACGAAGCCACGTATCACGGTCCGTTTTTGGTTCTCGCGCAACAAATACT GAACAGCACGTGGGTACAAGAGCACCGTTTTGAGTTCGACGAGGCTCCAA GCGTGGAAGCGGTGGCATCGCACCTGAGCCAGCTCGCCCTCAAGTTTCAA TGGCTACGACAAAGACGGAAGCCGCGTAGCAGCAAGGAAGAGGCAGATGG TGGCGCGATGGCGAGGCCAGTAGGCGTAGCGTTGCTGATGGCGGGAGTCG ACCGTGGAAACCGTCCGGTACTTTATCACCTCGATCCGTCAGGTAAATCC ATTGGTTCGGTGATACCTTGCCGCAGGTTGTTCCGGTTCGGTTTTCTTGC AAACGAAATCGTCTTGATGATTACATTACATTGCATTGGATACATGATGC TCAAATGACTCAGAGGCGGGATAGGTACCGTTGCAATTGGCAATCTACAG TGCATTGATCAAGCCACACCTACGTAAAGTGAGGTGCAACCAAACGAAAA CTAACTCTGTATAGTATAACAGCTTTGCAATGGAGCGAAGGGATGGATCG TTGGTCCTTCGGAATACGGGAGGTCACGAAAGTCAAGAGTTCTACTTACC ATCCCGTGAAGCTAAACACTCGCGCTCGATTTTTTTCGCTTCTCTAAGAG ACCCAGCGCTAAGCTGAGAGCTCTCTGAAGATGAAGGCGGTGTGCGAGCG AAGTCTGAAGTATCCTTGGCATGTGGTGTCGAGATGTCGACACAGGGAAA TGTCTTCGTCCCCGCAAACCGCCTTACTCCCGATTACCGATTACCACAGC ACTCTTTTTCGAGAAAGGTGCAAAGGGCAATATTCTGCTAACAGAGAATG CCGCCACTGATAGCATCTCTCTGCATGGTGCAATATACATTACATTACAT TACATTACATAGAGAGAGAGTCACTATCACTAATACTCCGAGTAATAGTT ATAGCAATAGTTTATGGTAAGGTGACTATTAATTGTTTTGGATTCTTCTC TTCGCCCTTTGGGACCGCCATCGGCTAATTCAACTCACTCAATTCACTCA AAATTGTTTTTCAATGCGCTTCCCGCTCAACTGTGCAAAATGATATCCTA TTTCGACCTGTGTCGCGCCCGCGTCGATCAATCCATCCCTTCTCTCTCAG GAGCATACATGCAGTGGCGAGCTAAGGCGATTGGGGAAAAGGGTGCCGCC GCAGAAGCCATGCTGGAAAAGTGTGGGCCGTACGGGAAAATGACCGTCAG ACGGGCGATGGTGGTGGTTCTGCAAGTGCTCAAGGAAGTATTGGGCGATG AGTTTTGCGAGGATAGGTTGGAAATGGTCTGCGTGGATTTGAGTGAAGGT GACACGGATCTCGGGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8160:5780..9797-

>mRNA_F-serratus_M_contig8160.19577.1 ID=mRNA_F-serratus_M_contig8160.19577.1|Name=mRNA_F-serratus_M_contig8160.19577.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig8160:5780..9797- (Fucus serratus male)
ATGTCTGGGCTCCTCCCGGACGGTCGTATGTTGGTCGACTACGCGCGATG
TCTGGGCTCCTCCCGGACGGTCGTATGTTGGTCGACTACGCGCGCACGTG
GGTACAAGAGCACCGTTTTGAGTTCGACGAGGCTCCAAGCGTGGAAGCGG
TGGCATCGCACCTGAGCCAGCTCGCCCTCAAGTTTCAATGGCTACGACAA
AGACGGAAGCCGCGTAGCAGCAAGGAAGAGGCAGATGGTGGCGCGATGGC
GAGGCCAGTAGGCGTAGCGTTGCTGATGGCGGGAGTCGACCGTGGAAACC
GTCCGGTACTTTATCACCTCGATCCGTCAGCACGTGGGTACAAGAGCACC
GTTTTGAGTTCGACGAGGCTCCAAGCGTGGAAGCGGTGGCATCGCACCTG
AGCCAGCTCGCCCTCAAGTTTCAATGGCTACGACAAAGACGGAAGCCGCG
TAGCAGCAAGGAAGAGGCAGATGGTGGCGCGATGGCGAGGCCAGTAGGCG
TAGCGTTGCTGATGGCGGGAGTCGACCGTGGAAACCGTCCGGTACTTTAT
CACCTCGATCCGTCAGGAGCATACATGCAGTGGCGAGCTAAGGCGATTGG
GGAAAAGGGTGCCGCCGCAGAAGCCATGCTGGAAAAGTGTGGGCCGTACG
GGAAAATGACCGTCAGACGGGCGATGGTGGTGGTTCTGCAAGTGCTCAAG
GAAGTATTGGGCGATGAGTTTTGCGAGGATAGGTTGGAAATGGTCTGCGT
GGATTTGAGTGAAGGTGACACGGATCTCGGGGAGGAGCATACATGCAGTG
GCGAGCTAAGGCGATTGGGGAAAAGGGTGCCGCCGCAGAAGCCATGCTGG
AAAAGTGTGGGCCGTACGGGAAAATGACCGTCAGACGGGCGATGGTGGTG
GTTCTGCAAGTGCTCAAGGAAGTATTGGGCGATGAGTTTTGCGAGGATAG
GTTGGAAATGGTCTGCGTGGATTTGAGTGAAGGTGACACGGATCTCGGGG
AG
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