mRNA_F-serratus_M_contig813.19549.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.960e-42 Identity = 86/173 (49.71%), Postives = 119/173 (68.79%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRKAHV 521
WA +A V V+ID+S +QL L CG+ MF IL+ KPFANS +N + + ++AVST LL V+AL+W+ SR +V +AV ++Q+++L +VIPVYLD VT+V GAI NR +K + +TG + E +R IR++ RR+WC WC MLRHN FACARDTR G+RK H+
Sbjct: 1728 WASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRK--ALGKTGQQQLKGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTREGVRKPHL 1898
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.640e-41 Identity = 85/170 (50.00%), Postives = 118/170 (69.41%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRK 512
WA A+V V+I++SV+QL L CG+ +MF IL+ KPFANS +N +E + ++A+S + SAL W+ +R + +V+++QLL+L +VIPVYLD VT+V GAI NR +K + +TG E T+EE+ +R IRSY RR+WC WC MLRHN FACARDT G+RK
Sbjct: 1547 WAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRK--ALGKTG-HELTDEEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRK 1713
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.860e-41 Identity = 85/173 (49.13%), Postives = 119/173 (68.79%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRKAHV 521
WA +A V V+ID+S +QL L CG+ MF IL+ KPFANS +N + + ++AV T LL V+AL+W+ SR +V +AV ++Q+++L +VIPVYLD VT+V GAI R +K + +TG + T E +R IR++ RR+WC WC MLRHN FACARDTR+G+RK H+
Sbjct: 1769 WASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRK--ALGKTG-QQLTGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTRDGVRKPHL 1938
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI) HSP 1 Score: 138 bits (347), Expect = 4.110e-34 Identity = 73/181 (40.33%), Postives = 111/181 (61.33%), Query Frame = 3
Query: 9 GVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRKAHVPSETIESERS 551
G+A +V++DDSV+QLFL CG+ + F +L+ +PFANS +N + L +++A S A+L +A WQ SR + + AV+++QL+AL+ ++IP+Y+D TV+ GAI + + +T S+ G T EE K RK IR YI R W WC ML N AC DT G R+ + + +R+
Sbjct: 416 GIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLADTAHRWQRTSRAKRMDTAVVVLQLVALVALIIPMYIDASTVILGAIREKIRSLTKSNTCDDGRTEEEAKEERKFIRGYIFRAWGPTWCRMLGSNVLACVADTTRGTRRVNTSAARTGPQRN 596
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 125 bits (313), Expect = 3.270e-29 Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLR 509
WA + + +ID+SVLQL L C + + F +L+ +PFANS +NA+ L ++AV ALL VSA W+ + +V + V+++QL AL ++IP+Y+D ++ GAI +R +K T+++ + TE EK +R +IRR W WC ML N FACA DTR G+R
Sbjct: 1195 WAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQKSTTTTPQHV--RTEAEKEEDLFVRHFIRRSWPRTWCTMLGKNIFACASDTREGIR 1361
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 5.140e-18 Identity = 55/169 (32.54%), Postives = 93/169 (55.03%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLR 509
WA +A ++V++D+S +Q L C + + F +L+ KPFANS +N + + + +AV +L +SA ++ + + V++ Q L + V+V+P+Y+D + +VWGAI NR + + ++A R+ I R W W M+ N FAC RDTR G+R
Sbjct: 469 WATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPVKTRDNAA-------QRAEREFINRRTLRLWGRTWFNMVGSNVFACVRDTREGIR 630
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.180e-10 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 3
Query: 6 AGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRK 512
A +A V V+ID S +QL + G++V+ F ++ PFAN V ++ +NA LL + E + E+ + AV +L+ LI + IPVY+D V AI +R +KI +++ + T+ +R CI W WC M+ N A A D NGLR+
Sbjct: 844 AVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVESMAACRVGVNAFCMVLLVGAEAEGDSVHAER-METAVGCFELILLIALAIPVYVDTGMVFGAAIYSRIRKI-AANRAARNDQTQTTGVTRPCIPE----GWGATWCKMIARNAAAYAGDVTNGLRR 1006
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 4.130e-9 Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVYNAVLIMQLLAL 269
W +A V V++++S++QL L CG+ ++F IL+ KPFANS N +E + ++A+S + SAL W+ R + +V+++QLL+L
Sbjct: 567 WVALALVGVMVENSIVQLVLFCGLPSVIFLILMFLKPFANSVTNNIEACVTAIDAISMGVFAASALWWEGTDRAAHLNTSVVVLQLLSL 655
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.080e-5 Identity = 45/180 (25.00%), Postives = 81/180 (45.00%), Query Frame = 3
Query: 3 WAGVAYVSVVIDDSVLQLFLLCGISVIMFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSAL----EWQEMSREQEVYNAVLIMQLLALIVVVIPVYLDLVTVVWGAILNRCKKITSSSETGIGETTEEEKASRKCIRSYIRRKWCYAWCVMLRHNFFACARDTRNGLRKAHVPSE 530
W ++ + + +Q +C I V+ F IL+ KPF+NS + + +A++ L+ + + + R + VY L++Q LA++ VIP+YLD + G + +C ++ TT + KA K S + +C ++R NF C + T G V +E
Sbjct: 828 WLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKG-------TTSKFKAPIKGSSS----ETASIFCALVRENFVGCVKSTWRGPTYNPVQTE 996 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig813.19549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig813.19549.1 >prot_F-serratus_M_contig813.19549.1 ID=prot_F-serratus_M_contig813.19549.1|Name=mRNA_F-serratus_M_contig813.19549.1|organism=Fucus serratus male|type=polypeptide|length=160bp MFAILLRQKPFANSAVNAVEMFLAMLNAVSTALLGVSALEWQEMSREQEVback to top mRNA from alignment at F-serratus_M_contig813:319254..320878- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig813.19549.1 ID=mRNA_F-serratus_M_contig813.19549.1|Name=mRNA_F-serratus_M_contig813.19549.1|organism=Fucus serratus male|type=mRNA|length=1625bp|location=Sequence derived from alignment at F-serratus_M_contig813:319254..320878- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig813:319254..320878- >mRNA_F-serratus_M_contig813.19549.1 ID=mRNA_F-serratus_M_contig813.19549.1|Name=mRNA_F-serratus_M_contig813.19549.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig813:319254..320878- (Fucus serratus male)back to top |