mRNA_F-serratus_M_contig8108.19517.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8108.19517.1
Unique NamemRNA_F-serratus_M_contig8108.19517.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8108.19517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8108contigF-serratus_M_contig8108:5871..6195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.2655282-UTR-F-serratus_M_contig8108:5870..58741622932420.2655282-UTR-F-serratus_M_contig8108:5870..5874Fucus serratus maleUTRF-serratus_M_contig8108 5871..5874 +
1690964300.4231718-UTR-F-serratus_M_contig8108:5870..58741690964300.4231718-UTR-F-serratus_M_contig8108:5870..5874Fucus serratus maleUTRF-serratus_M_contig8108 5871..5874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932420.2812662-CDS-F-serratus_M_contig8108:5874..61951622932420.2812662-CDS-F-serratus_M_contig8108:5874..6195Fucus serratus maleCDSF-serratus_M_contig8108 5875..6195 +
1690964300.4368145-CDS-F-serratus_M_contig8108:5874..61951690964300.4368145-CDS-F-serratus_M_contig8108:5874..6195Fucus serratus maleCDSF-serratus_M_contig8108 5875..6195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8108.19517.1prot_F-serratus_M_contig8108.19517.1Fucus serratus malepolypeptideF-serratus_M_contig8108 5875..6195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8108.19517.1

>prot_F-serratus_M_contig8108.19517.1 ID=prot_F-serratus_M_contig8108.19517.1|Name=mRNA_F-serratus_M_contig8108.19517.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MWCSFHKSTTHSDETCRTLQQQLGNNGSANCANQGSDYPAVLTASDPPPG
CNIEEQGISFAAVEVPNRAEPPKEESFWPFGPTDEAVASFDTSGFFSGFG
GATSDTG
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mRNA from alignment at F-serratus_M_contig8108:5871..6195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8108.19517.1 ID=mRNA_F-serratus_M_contig8108.19517.1|Name=mRNA_F-serratus_M_contig8108.19517.1|organism=Fucus serratus male|type=mRNA|length=325bp|location=Sequence derived from alignment at F-serratus_M_contig8108:5871..6195+ (Fucus serratus male)
GCCGATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACAT
GCCGTACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCC
AACCAGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCC
CGGTTGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGC
CGAACAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCC
ACCGATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTT
TGGAGGTGCCACCAGCGACACTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8108:5871..6195+

>mRNA_F-serratus_M_contig8108.19517.1 ID=mRNA_F-serratus_M_contig8108.19517.1|Name=mRNA_F-serratus_M_contig8108.19517.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig8108:5871..6195+ (Fucus serratus male)
ATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACATGCCG
TACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCCAACC
AGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCCCGGT
TGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGCCGAA
CAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCCACCG
ATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTTTGGA
GGTGCCACCAGCGACACTGGGATGTGGTGCTCGTTCCACAAGTCCACCAC
GCACAGTGACGAGACATGCCGTACGCTACAACAGCAGCTGGGCAACAACG
GTAGCGCAAACTGTGCCAACCAGGGGTCGGACTACCCCGCCGTCCTGACT
GCAAGCGATCCTCCTCCCGGTTGTAATATTGAGGAGCAAGGCATATCGTT
CGCTGCAGTAGAAGTGCCGAACAGGGCCGAACCACCAAAAGAGGAGAGTT
TCTGGCCGTTCGGTCCCACCGATGAAGCGGTTGCCTCGTTCGACACCAGC
GGATTTTTCAGCGGCTTTGGAGGTGCCACCAGCGACACTGGG
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