mRNA_F-serratus_M_contig810.19515.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig810.19515.1
Unique NamemRNA_F-serratus_M_contig810.19515.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.150e-38
Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNN 311
            E+YTS+APYDPLFWV+HP+++RFL+WRR LA   PD WALDET       V+GETG++CDW+GV ++ LDMP+CV+G CGGH   D+LPF +++ G+  +  N
Sbjct:  527 ELYTSSAPYDPLFWVIHPTAERFLSWRRKLATERPDVWALDETWGYSHGHVVGETGVVCDWSGVGDDFLDMPSCVRGICGGHGVDDMLPFEIKVKGETVKMTN 629          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 8.730e-37
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNNA 314
            EMYTSAAPYDPLFWV+HP++DR LAWRRML R   + W  DET       V+GETG +C+W  V     DMP CVKG CGGH E D+LPF+V+ING+  +  NA
Sbjct:  523 EMYTSAAPYDPLFWVIHPTADRLLAWRRMLGRQGAEGWDFDETWGYAHSSVVGETGTVCNWDDVVPGSGDMPTCVKGICGGHNEDDLLPFSVKINGEVMKLTNA 626          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.690e-35
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNNA 314
            E+Y+S+APYDPLFWV+HP+++RF+ W+R LAR  PD     E        V+GETGM+CDW+GV +  LDMP CVKG CGGH   D+LPF V+I G+ ++  NA
Sbjct:  550 ELYSSSAPYDPLFWVIHPTAERFMGWKRKLARERPDVHPFSEDWGYTHGNVVGETGMVCDWSGVRQGTLDMPTCVKGICGGHSAGDLLPFKVKIGGEVRKMTNA 653          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.440e-35
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNN 311
            E+YTS+APYDPLFWV+HP+++RF+ WRR L    PD W LDET       V+GETG +CDW  V E  LDMP C KG CGGH   D+LPF V++ G+  +  N
Sbjct:  532 ELYTSSAPYDPLFWVIHPTAERFMGWRRKLGVEQPDMWPLDETWDYSHGWVVGETGTVCDWDDVREGSLDMPTCRKGICGGHGADDLLPFKVKVKGETMQMTN 634          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.600e-34
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNNA 314
            EM+TSAAPYDP+FWVVHP++DR LAWRRML R   + W  DET       V+GETG +C+W  V     DMP C+ G CGGH E D+LPFTV++ G+  +  NA
Sbjct:  523 EMFTSAAPYDPVFWVVHPTADRLLAWRRMLGRQGVEGWDFDETWGYTHTSVVGETGTVCNWDDVVPGSGDMPTCITGICGGHNEDDLLPFTVKVKGENVQLTNA 626          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A7S2CY94_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY94_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.070e-20
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGET-----GMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLP---------FTVEINGQRQRFNNA 314
            EM+TSAAPYDP FW +H ++DRFL+W+R+L  +    W  DE+         G T     G +CDWT V +   D+PNC K  C GH  F+ +P         F     G R+++ NA
Sbjct:   63 EMFTSAAPYDPTFWPIHTTADRFLSWKRILRANGLIDW--DESWAYVHDMAPGMTPASDAGQVCDWTAVRDGLFDLPNCSKQICPGHLPFEEIPWEKFPGDKKFDSVTKGARKKYTNA 178          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A7S2CMM8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMM8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.580e-19
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVI-GETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPF 272
            EMYTSAAP DPLFW +H  +D+F+  +R++         LDE+        +  +TG++CDW+GV      MPNC K TC GHKEFD++PF
Sbjct:   91 EMYTSAAPLDPLFWPLHGLADKFINMKRLMKD--AKKTVLDESWGFTHLHQVPSDTGVVCDWSGVTGE-FQMPNCTKKTCPGHKEFDIIPF 178          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A7S2CGQ1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGQ1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.870e-19
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNN 311
            EMYTSAAPYDP FWV+H +++R L +RRM A    D   LDET          + G++CDW+ V+  G  +P C    C GH   D LPF+ +  G  + ++N
Sbjct:  510 EMYTSAAPYDPTFWVLHTAAERLLQYRRMQA----DVSPLDETWGFAHMNAASDVGVVCDWSSVENGGDSLPTCTAKLCEGHGATDTLPFS-DFLGHGETYSN 607          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: F0YJP7_AURAN (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJP7_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 2.950e-19
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 EMYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXXVIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFT 275
            + ++SAA  DP+FWV+HP +DRF+A+RR+L   +     LDET       +  +T   CDW  VD     +P C  GTC GHKE D+LPFT
Sbjct:  526 DSFSSAASQDPIFWVLHPLADRFIAYRRLLT--HEGLMTLDETWDYDHARIASDTHSTCDWADVDAGLSLLPTCTPGTCAGHKEDDLLPFT 614          
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Match: A0A7S2AZU9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZU9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 8.140e-19
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 3
Query:    6 MYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETXXXXXXX-VIGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRFNNA 314
            M+TSAAPYDP+FW +H  +DRFL  +RM+A     T   DET           +T  +CDW+GV+  G+ +P C +G+C GHK  D++P++     + + + N 
Sbjct:    1 MFTSAAPYDPVFWPIHGLADRFLQLKRMMADD--GTTTFDETWGYVHSGNTPSDTNHVCDWSGVE--GMQLPTCTEGSCSGHKSNDIIPWS-NFQNKNETYTNV 99          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig810.19515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3M0_9PHAE2.150e-3856.31PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0J8_ECTSI8.730e-3758.65Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
D7FSP4_ECTSI2.690e-3553.85PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G0J9_ECTSI3.440e-3554.37PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LKB4_9PHAE1.600e-3454.81TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2CY94_9STRA1.070e-2038.98Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CMM8_9STRA2.580e-1946.15Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CGQ1_9STRA2.870e-1941.75Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
F0YJP7_AURAN2.950e-1945.05Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
A0A7S2AZU9_9STRA8.140e-1938.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig810contigF-serratus_M_contig810:228014..229569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue2.1e-30
Seed eggNOG ortholog2880.D7G0J8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size315
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig810.19515.1prot_F-serratus_M_contig810.19515.1Fucus serratus malepolypeptideF-serratus_M_contig810 228014..229564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932419.8518927-CDS-F-serratus_M_contig810:228013..2280461622932419.8518927-CDS-F-serratus_M_contig810:228013..228046Fucus serratus maleCDSF-serratus_M_contig810 228014..228046 -
1690964300.1598117-CDS-F-serratus_M_contig810:228013..2280461690964300.1598117-CDS-F-serratus_M_contig810:228013..228046Fucus serratus maleCDSF-serratus_M_contig810 228014..228046 -
1622932419.868117-CDS-F-serratus_M_contig810:228518..2286871622932419.868117-CDS-F-serratus_M_contig810:228518..228687Fucus serratus maleCDSF-serratus_M_contig810 228519..228687 -
1690964300.1776588-CDS-F-serratus_M_contig810:228518..2286871690964300.1776588-CDS-F-serratus_M_contig810:228518..228687Fucus serratus maleCDSF-serratus_M_contig810 228519..228687 -
1622932419.884109-CDS-F-serratus_M_contig810:229457..2295641622932419.884109-CDS-F-serratus_M_contig810:229457..229564Fucus serratus maleCDSF-serratus_M_contig810 229458..229564 -
1690964300.1885087-CDS-F-serratus_M_contig810:229457..2295641690964300.1885087-CDS-F-serratus_M_contig810:229457..229564Fucus serratus maleCDSF-serratus_M_contig810 229458..229564 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932419.8997915-UTR-F-serratus_M_contig810:229564..2295691622932419.8997915-UTR-F-serratus_M_contig810:229564..229569Fucus serratus maleUTRF-serratus_M_contig810 229565..229569 -
1690964300.2010798-UTR-F-serratus_M_contig810:229564..2295691690964300.2010798-UTR-F-serratus_M_contig810:229564..229569Fucus serratus maleUTRF-serratus_M_contig810 229565..229569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig810.19515.1

>prot_F-serratus_M_contig810.19515.1 ID=prot_F-serratus_M_contig810.19515.1|Name=mRNA_F-serratus_M_contig810.19515.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MYTSAAPYDPLFWVVHPSSDRFLAWRRMLARHYPDTWALDETWGYEKTWV
IGETGMLCDWTGVDENGLDMPNCVKGTCGGHKEFDVLPFTVEINGQRQRF
NNA
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mRNA from alignment at F-serratus_M_contig810:228014..229569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig810.19515.1 ID=mRNA_F-serratus_M_contig810.19515.1|Name=mRNA_F-serratus_M_contig810.19515.1|organism=Fucus serratus male|type=mRNA|length=1556bp|location=Sequence derived from alignment at F-serratus_M_contig810:228014..229569- (Fucus serratus male)
GGGAGATGTACACGTCCGCCGCTCCATACGACCCCCTTTTCTGGGTGGTG CACCCCTCGAGCGACCGATTCCTGGCGTGGCGACGAATGCTCGCTCGGCA TTATCCCGACACGTGAGTCCATGAGTTCATCTACTGTATCAGTATCATCA ATGCTATCGATACTACTAATGCTATCAATGCTGTTAAGGATGTTTTGGTG TAATGCACGGGGAAGGAGAGAAGTCCGTGAGTAAGCACCAGATTCCGCTT GGGTATGGAGAATGAGCGGGCTGACGCGGGACGCGGCGGTCGAACCTGTC TAGCGAGACCCGCGGACGGGAACAGTGGAGAATGAGCGGACTGACTCGAG ACCCGCGAGCGGGAGCAAGGGAGAATGGGCAGGATTAACAGCCGTTCCTA GTTGATGTCCAATCTGCTGAAAGTGGTAGATCATACATACATACTGTACA CGCCCCCACGTAGTGCATTTATGTACTTGTATATATATATTTATGTATGA TAGGTGTGTGTGAGTGATACGGTTAGTACGAGGTCAAACATTTAGCACGA GGGGAGGGGGGAAGGGGGCAGGGCAACGCGATGACTGCATGACGTTGTCG GGGTTAAAACCGAAACCAAAACCAAACGTGTGTTCGAGAGAGGCCAAACG ACAGCGCAGCAAACAGCCGCCCCCTGTTGGAGCTACGGTGGCGCTGAGGG TGGACCGAGCCAAACGAGCTGCGCGCTTTCTAACCTCTCATTGAGGGCGC ACCACTTTTATGGAGGCGTTTCGTCCCCCCCCCCATTCTACCATAGGCAA TGTTTGATTCGGCACTGACGCGCGCTAGAGCTATTCAACCACTGTGGTCG TTTCACGTTTGACTGTGGCGTGCGATACTCAGGTGGGCCCTGGACGAGAC GTGGGGTTACGAAAAAACTTGGGTGATTGGAGAGACGGGAATGTTATGTG ACTGGACAGGCGTTGACGAGAACGGGCTGGACATGCCCAACTGTGTCAAG GGAACCTGCGGCGGCCACAAAGAGTTCGATGTGCTGCCCTTCACCGTAGA GGTGATAATGTATTCATGAATATATATAGTAGGGTTTGAACACTCATGAA TATACAACCATAGATAGCTTAATGAGGGAAAACACTACTAGCTCCTGGTA TCATGTACAGCCTTGTTGAGGGTTCGTAGCGACGGTATCGCCCGCGAGAA TTGTTACAGGACAACTAACTTACAACAACGCAGTTGGTTGTATCGAGTGT GGAATCGGAGAGTAACTGCCATCGCACCGTACACGGGGGGTTTCCACCCG TCCGAAAGACAAATGTTACGGAGGGTAAGGGCAAGGCAAGGGCGAGGACG CACCGTTTCCCCCCGTGCTCTAACCGCGCACATCGTTGAGACGCATCTCG AGAGTTTTTTATTTTTTTTCTTGAGATCTCCGCCAGGACGAGCGGTTTTG AGACACACCGGAAGCTACCACGCAGCACTCGTCTACAACACGCGTTTCGT TTCACCCCCCCCCCCTCTTGTAGATCAATGGCCAGCGGCAGCGCTTCAAC AACGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig810:228014..229569-

>mRNA_F-serratus_M_contig810.19515.1 ID=mRNA_F-serratus_M_contig810.19515.1|Name=mRNA_F-serratus_M_contig810.19515.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig810:228014..229569- (Fucus serratus male)
ATGTACACGTCCGCCGCTCCATACGACCCCCTTTTCTGGGTGGTGCACCC
CTCGAGCGACCGATTCCTGGCGTGGCGACGAATGCTCGCTCGGCATTATC
CCGACACATGTACACGTCCGCCGCTCCATACGACCCCCTTTTCTGGGTGG
TGCACCCCTCGAGCGACCGATTCCTGGCGTGGCGACGAATGCTCGCTCGG
CATTATCCCGACACGTGGGCCCTGGACGAGACGTGGGGTTACGAAAAAAC
TTGGGTGATTGGAGAGACGGGAATGTTATGTGACTGGACAGGCGTTGACG
AGAACGGGCTGGACATGCCCAACTGTGTCAAGGGAACCTGCGGCGGCCAC
AAAGAGTTCGATGTGCTGCCCTTCACCGTAGAGGTGGGCCCTGGACGAGA
CGTGGGGTTACGAAAAAACTTGGGTGATTGGAGAGACGGGAATGTTATGT
GACTGGACAGGCGTTGACGAGAACGGGCTGGACATGCCCAACTGTGTCAA
GGGAACCTGCGGCGGCCACAAAGAGTTCGATGTGCTGCCCTTCACCGTAG
AGATCAATGGCCAGCGGCAGCGCTTCAACAACGCCATCAATGGCCAGCGG
CAGCGCTTCAACAACGCC
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