mRNA_F-serratus_M_contig81.19493.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig81.19493.1
Unique NamemRNA_F-serratus_M_contig81.19493.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig81.19493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig81contigF-serratus_M_contig81:189499..192665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig81.19493.1prot_F-serratus_M_contig81.19493.1Fucus serratus malepolypeptideF-serratus_M_contig81 189653..192665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.983124-UTR-F-serratus_M_contig81:189498..1896521622932412.983124-UTR-F-serratus_M_contig81:189498..189652Fucus serratus maleUTRF-serratus_M_contig81 189499..189652 +
1690964296.6050382-UTR-F-serratus_M_contig81:189498..1896521690964296.6050382-UTR-F-serratus_M_contig81:189498..189652Fucus serratus maleUTRF-serratus_M_contig81 189499..189652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932413.0022824-CDS-F-serratus_M_contig81:189652..1897981622932413.0022824-CDS-F-serratus_M_contig81:189652..189798Fucus serratus maleCDSF-serratus_M_contig81 189653..189798 +
1690964296.6158268-CDS-F-serratus_M_contig81:189652..1897981690964296.6158268-CDS-F-serratus_M_contig81:189652..189798Fucus serratus maleCDSF-serratus_M_contig81 189653..189798 +
1622932413.018616-CDS-F-serratus_M_contig81:192580..1926651622932413.018616-CDS-F-serratus_M_contig81:192580..192665Fucus serratus maleCDSF-serratus_M_contig81 192581..192665 +
1690964296.631899-CDS-F-serratus_M_contig81:192580..1926651690964296.631899-CDS-F-serratus_M_contig81:192580..192665Fucus serratus maleCDSF-serratus_M_contig81 192581..192665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig81.19493.1

>prot_F-serratus_M_contig81.19493.1 ID=prot_F-serratus_M_contig81.19493.1|Name=mRNA_F-serratus_M_contig81.19493.1|organism=Fucus serratus male|type=polypeptide|length=77bp
MKVWQGAPSCAVHTNAQHLAMVTTENYLHGPNQKWALDFSQTKHIAFDLN
ETRGVKRISSYTLQTEQVGVHTTLKSS
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mRNA from alignment at F-serratus_M_contig81:189499..192665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig81.19493.1 ID=mRNA_F-serratus_M_contig81.19493.1|Name=mRNA_F-serratus_M_contig81.19493.1|organism=Fucus serratus male|type=mRNA|length=3167bp|location=Sequence derived from alignment at F-serratus_M_contig81:189499..192665+ (Fucus serratus male)
AGCAAATGCGCCGCAACCTACGTCCAATCATCTAAGACCGACAATATATG
TTACGTTTCAAGTAACACGCCTGTCAACACTATTACACTAGCCCACCCTG
GGAAGCCTGGGATAAGCGCAAGCAGTGCGAAAGACCGGCTGACCAAAACG
TCCAATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATG
CTCAACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAAC
CAGAAGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTT
GCAAACAGCGGCGAAAGTTCAAACAACGGATTTTTGCGCGAATCAAGAGC
AGTGACGTACTATTGTAACTACTGCATAAAACCACGACCGCACGATAACA
GTACCGAAACGACCTCCCGTTACTATTCTATAGCCAAGATGAGATCCTCG
CAGACCCACACAGAGTACTTCCTATGGTCCCAGCGCCGGATTCATCAGTA
TCATAGTACAGTACCAAACACTCTTCCGTTATCTGTTTATGCCCAATCAA
ATGAAATCCTCGCAGACCCAAAACGAAAACACTTCCTACGGTCCCAGCGT
TGGATTCATCATTACAAATATCGGCCCACCGGTACTATCTTGGCCGGCCA
ATTTCTCGAAGATGGGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGTC
TTCTACGCTGAACTGGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCG
AAGTCTACCTGTCAAAACAAATTATACTGTATGGGAAATTTTCAAATCCA
GAAACAAAACCACGGCAATAATGGACACTGTCGTCAATCAGAACTGTCGT
TCGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTGTAACTCGATCACA
CACCTTCATCATGACACCCTTTTTCAAAAGGAAAGTCAGAAGGGAGATGA
AATGCCGATGGGTGCTGCTCTCGTGAGCATACCCTTTTTAAAAACGGCTA
CCCGCGGTATCAACTTGTCACCGAGTAGTCCGTGGGCGCTAAGTAACACG
TAGCCCACCCAAGCCCAAACCTCGGGCTTGCAGCGTCAGTTATCATCAGT
AAGCTGTACGCTGGTGATGTCTTTCGTGGCCATAAACCACTAGTGCCAGG
AAAAGGGAACTCAACCCATAGTAGTAGTCTAGCTGGGGTCAAGAATTTTC
AGCTCCGCACGTTGTCGCTTAAGCCCTGAATACCTCTGATTTTTTTGTTT
TTTGTTTTTTCGGTTTTTCCTCTGAATATGGTATGAAGCATACAGACAGT
AGTAGACGTCAAATAAGTACAGGAACAAAGTTTGAAGTTTCACACTTGAT
GATATCTTCGTAGACAGTCTGGTCTATCAGACTATCAAAATAATCAAGAT
AATAAAAATGACGTACTGACTGTATTTCGTATTCTTTTTGGTGCGTATCG
TGAACGAAAAGTCAATCCGCTAGGTGTACAGTATACGGTATACGGAGCAT
ATTTTTTGTACTATAACCGATTTACTGTATTCGAGTACAAAATGTCTCTT
GTCTGTTGTGTCCGAGAAACCCTCTTGTCGAGGTACACGATCACAACTCC
TTAGCTCGATGAGGCCCTCGGAGGCACTGGCGGTGCCTGGAGACTTCTAG
GATGTGGTCTGTGCTTTCTGCTCGCCACGATAAACGTGCCCGACGGACCC
ATCTCCTGTAAGAGGACTGGGAAGAGAACCGTCTGCCGAATAGGCTGAAA
ACCTTCACGAGCCCTGCTTGCCATGAGTCCCAGCAACAGTAGTCAGCTCC
TAGCTAGCAGGGGAATGCAGGCTAAGGCTTCTTTGTGGTGTCGGACGCTA
AGGCTTTGTTTTTGTGAGCGTGAGTGAGAAGTGATCTTTGTGACATGTGG
TCGGGCCTGGGAGTATACAGAAGATGTCTGTGCTTTCTGCTCGCCACGAG
AAACGTGCCCAGCAGACCCATCTATCTGCTGTAGGAAGAGCAGAGAGATA
TAACTGTCTGCCAAACAGGCTGACAACCTTGACGAGCCCTGCTCGCCATG
AGTCGCAACAGGAGTCAGCTTCTAGCTGGTAGGATGCAGGCTAAGGCTTT
GTTGTGTCGGAGGCTAAGGCTTTGTTTTTGGGGGTCTGAGTGAGAAGGGG
TCTTTGCGATATGTAGTCGGGCCCACGGAGTAGACAGAGATGTATACTTA
TAGAAGGTTTTCGGTGCCACGCGAAGGGGCCGAAAAACCAAAAAATAAAA
AACCGAAAAACCGAATTGCAGAGAGAGGTGTTCAGGGCTTTACAAACGGA
GAATGGTCTGTACATTCAGACAGGACCAAAATCAAGTGTTACTCGTAAAG
ACTAGATAGCCCTCACAATACTGTACGTAGTTTCATTTTTGGTTGGTTGC
CACAATCTTCGTTTCATAGTAGAGTAACTTGCCTGGCTTCCCAATGCCTA
TTTCTTGGAATTTCGTGTCGTGTCCATTTTTTGTGGTTACGGCAAAACGC
TACGCCCCTTTTTAATGACTTCTCAATCAGATGTCACCCTTGAGATGTTC
GGCTAACATTCGTCTGGTGATATTGTAGCTCTGACGCTAACCAACGATCA
ATAAGCCCGTAGACGATTTCGCTTAATTCTTTACCGTTGTCAGTTGCTGG
AGTGGATCACTATTATCTTGTTGTTGTTGTTGTTTTCTTATCTCAACACT
CTGATTAATCACGCATATTTTCAGAGATGCGTTGTCCAAGCGTTTGCTTG
TATTGAGATTCAGAGTATTCTTGCCCTAGGTTAGAATTGTTGTTACATAC
GGCAATAATGCGAGACATCTCGGCTTCTACCGTAGAACGATCTCCCCATC
TGGGCTACGAACAAGAGGGCATTGCTCCGAGCGTCCCCCGTTCCTATCAC
GTTCGAATACCTATGGCTTTTGTCCTACCGTCGACGCCAAATTGTTATGG
AGTTATCCAACTCCCTGTAGATTCTTTGACGGTGGTATGTGTCTCGCTCA
GGAGACCAGGCGAAGGATGGATGTATAAAAAGGTATCTTCGTTAACTTTC
GTCCCTTGAAGTACCTACCGACTTACTCATAGAAATGAAACACGAGGAGT
CAAACGTATATCAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACA
CCACCCTAAAATCAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig81:189499..192665+

>mRNA_F-serratus_M_contig81.19493.1 ID=mRNA_F-serratus_M_contig81.19493.1|Name=mRNA_F-serratus_M_contig81.19493.1|organism=Fucus serratus male|type=CDS|length=462bp|location=Sequence derived from alignment at F-serratus_M_contig81:189499..192665+ (Fucus serratus male)
ATGAAAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCA
ACACCTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGA
AGTGGGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTATGA
AAGTTTGGCAGGGGGCGCCTAGCTGCGCTGTCCACACCAATGCTCAACAC
CTAGCGATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTG
GGCGTTAGATTTCTCTCAAACTAAACATATTGCATTCGACTTAAATGAAA
CACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACAGGTG
GGGGTTCACACCACCCTAAAATCAAGCAAATGAAACACGAGGAGTCAAAC
GTATATCAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACACCACC
CTAAAATCAAGC
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