mRNA_F-serratus_M_contig809.19488.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig809.19488.1
Unique NamemRNA_F-serratus_M_contig809.19488.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig809.19488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig809contigF-serratus_M_contig809:328688..334031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size610
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig809.19488.1prot_F-serratus_M_contig809.19488.1Fucus serratus malepolypeptideF-serratus_M_contig809 328801..333780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.7310705-UTR-F-serratus_M_contig809:328687..3288001622932412.7310705-UTR-F-serratus_M_contig809:328687..328800Fucus serratus maleUTRF-serratus_M_contig809 328688..328800 +
1690964296.4776347-UTR-F-serratus_M_contig809:328687..3288001690964296.4776347-UTR-F-serratus_M_contig809:328687..328800Fucus serratus maleUTRF-serratus_M_contig809 328688..328800 +
1622932412.7783961-UTR-F-serratus_M_contig809:333780..3340311622932412.7783961-UTR-F-serratus_M_contig809:333780..334031Fucus serratus maleUTRF-serratus_M_contig809 333781..334031 +
1690964296.522379-UTR-F-serratus_M_contig809:333780..3340311690964296.522379-UTR-F-serratus_M_contig809:333780..334031Fucus serratus maleUTRF-serratus_M_contig809 333781..334031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.745392-CDS-F-serratus_M_contig809:328800..3289471622932412.745392-CDS-F-serratus_M_contig809:328800..328947Fucus serratus maleCDSF-serratus_M_contig809 328801..328947 +
1690964296.4987288-CDS-F-serratus_M_contig809:328800..3289471690964296.4987288-CDS-F-serratus_M_contig809:328800..328947Fucus serratus maleCDSF-serratus_M_contig809 328801..328947 +
1622932412.7626069-CDS-F-serratus_M_contig809:333681..3337801622932412.7626069-CDS-F-serratus_M_contig809:333681..333780Fucus serratus maleCDSF-serratus_M_contig809 333682..333780 +
1690964296.5078883-CDS-F-serratus_M_contig809:333681..3337801690964296.5078883-CDS-F-serratus_M_contig809:333681..333780Fucus serratus maleCDSF-serratus_M_contig809 333682..333780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig809.19488.1

>prot_F-serratus_M_contig809.19488.1 ID=prot_F-serratus_M_contig809.19488.1|Name=mRNA_F-serratus_M_contig809.19488.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MSYHTKTANDQAINLEDFPKERTKASRDIAPVAAVRPIRVLPPALDRPPA
PAPQPPRNATWDIFNPATEDFVLLDPATPCF*
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mRNA from alignment at F-serratus_M_contig809:328688..334031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig809.19488.1 ID=mRNA_F-serratus_M_contig809.19488.1|Name=mRNA_F-serratus_M_contig809.19488.1|organism=Fucus serratus male|type=mRNA|length=5344bp|location=Sequence derived from alignment at F-serratus_M_contig809:328688..334031+ (Fucus serratus male)
ATCTGTAATATACTCCCCAAGCCATAGGAGCTGCAATTCCCATTTTTCCG
AGCACGCGAAATCATTTAGTGAGAGCTTCGGCACACGCTGTTCCGCCCGA
TAACCCTGCAAAGATGTCGTACCACACAAAGACGGCCAACGATCAGGCGA
TCAATCTTGAGGATTTCCCTAAGGAGCGAACAAAGGCATCGAGGGACATA
GCCCCCGTTGCAGCGGTCCGTCCCATCAGAGTGCTTCCTCCTGCCCTGGA
CCGCCCACCGGTATGAGTACTCATCCTCACGAAACAGTGTTGTATTTGCA
TAACATCTGCCCCGCAATGTTGAAAGGTGCGATGGTGCTCACCTCATGAA
CCGCCATCCTTCTTGGAATCGGTGGCTATGCTTAAGGCAACGGTAGGGAT
TGATTCTCGCACAAAGCACTACTCGTACAAGTATACGTATGGTAACTTAT
TATTGAAGTACTGTAAATAGATGGACGCCGCCGCGGAAATCGAGAAGCAC
CAGATTCAGCCAGAGCATGGGGAATGAGCAGACTGACGTGGGATGGGGCG
GCTGAACCCGTCTCGCTCGACCAAATTCTCAGGCGCGTACGGGGACACGG
GAATATACATTTTGCTCTGCTCAGCTGACCACGAGCAGGATTGGGTGTAC
CTTTAGAGCATACAGGTGTAGTAGGTTCGGTATACTCGACCAGGTACTCG
TTTATACCAGATTTCATTTAGCCAGAGTGTGGACAAAGAGCGGGCTGACG
CTGGACAGTTTCTTCAGCAGTTGCAAGGACAAAAAAAATACAATACCCCG
AGTGTGTGAAATCAATCAATCAATTAATCAATCAAGGACGACCGAACCTT
CTCGCAAGACCAAATTCAGCGCGGACGGGAACAGCGAATTTTCAATTTAC
CCTGTTCAGCTGATGACGTGCCGGATTGATGCCAAGAGGTTATATCTTTG
CAGCCTATGATACCACCTCTAAAGTATTTGACATTTTTTCCCCCAGTGGG
GTCGACCCCGGTTGCTCAGTAGGCACCTCGTAACCTTCTGACACGTTGGG
ACGTGAGTTCGATCCCGGCAAACGGAATTTTTCTCACTAAAAACTAAAAA
ACCAAAATAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTACA
CAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCT
CGCGACAAAAATCAAGGCACGCACCGCAGAAGGAAGGTGGATGAAAAATC
CTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTGGTACGTCCAACGAA
CTTGATGTCCAGAACGGATGGGAAGAAAACACACACACACAGTGTGGGAT
GCTCAAAAGGTCGAGATGCGTACCAGGTACAATTTTATTTTATTTTAATC
ATACACAAAACACTCCTCAGGTACAAGGGACGTCGAAAAGCACAAGACAG
CGGTATCGCACAAAAATTGGTCGATGGTGATTCCTGAGAAGGCAGCACTC
GTTACTGGAATCACCTTGAGGACTACTGGCCCGACGCCGGCGGATTCTCG
GCAGTGAAGGCCATCAGTACGCAATTGCGTGACCTGATATAAACTCGAGA
CTGTCCGTCGGAGGTTGACGGCATCGATAGACGAATCGCGGAAAGCAGGA
GGAATTCCGAGAGTAACCATGAGATTCAGTCTGAGTGTTGAGAATGAGCA
GGCTGACGCGGTGTGGAACGGCCGAACCTGTCTCGCGAGACCAAATTCTC
AGGCGCGAACGCGGACAGGGAAATATTCATTTCCTCCGCTCATCTGACCA
CTAGCAGCATTGGCAACCTTACCCGGTTGATCAAAACCCGGCTATGTTGT
TGTTTTCTTCACATTAACCTGACATTAACCGATCGGGCCTCAACCATACC
CAATACTATACGTGGTTGCCAATCCGGTACGTGGTCTGCTGGACAGAAAA
AGATCAGAGGAACATCTACCAAAACACACAAACAAAAACGACAAAGAGAA
AGGAACAAGAATAACAAAATACACATGCCAGAAAAAGATAGACGAAGGAA
ATTCGATAGAGAGAGTTTAGCATATAGTCAGCCGCGAGCCATCCTATACC
CTCCCCGGATCGCAACCATGCACCCAAAACGCGTAGCATCTACCGCATTC
CGTAGACTACTCTCTTAAGGTTTCAGTTTTCACTAAGGGAGTCCTTGGGT
TGGTCCAATCAACGCGGTTCGAAAACGTCTCATATGTCATGATAGATACA
TACTACTACAACTGTCATCTATTTTCGTCCGACAGGTTTGGCCGTATCGT
CTCGCGTCAGCCTGTACATTTCCCGAATCTGATGCTTCCTCGCGAGATTC
CTCCCGATTTCAGGGGTGGCGTCCATTTGTTTATTCAAACCGCAATACGC
AATCGGCCCAGTCCCGAGTATATCGGGTCACGCAATTGCGTACAGATGGC
GTCCACTTCCTAGAGTCCGCCAGCGCAGGGCCAGTAGTCCCCAAGGTAGT
TCCAAACGGGTGCTGCCGTTGCAGATGACCGAATTCACCAACTACGCCTC
TCTTTTCCTACACCACACATACGTAGTATTTGTGTACATAAGCACGACAT
ACGCTACGTATTGTGTGTACGTATATATGTATAGTGATCACTTAATACAA
GTGTGAAATAGCAGAGTCTTGATCAACCGGGTAAGGTTGCCAATCCTGCT
CGTGGTCAGCTGAACGTGGGAAAATAATGTTTCCCTGTCCCCGTTCGCGC
CTGAGAAATTGGTCTCGCTAGGCGGGTTCGCCCGTCCCGTCTCATGTCAG
TCTTGCCTGCTCATTTTCCATACTCAGACTGAATATGGTGCTTACTCACG
GAATCCCTCCCGATTTCCGCGGCGGCGTCCATTTATTTATGCGTATGGTC
ACACATCTAGCAAGAGTATGGATCAACCAGTTACGGTTGCCATTCCTGCT
CATGGTCAGCTGAACAGGGAAAATGAATATTCCCCTGTCCGCGTTCGTGC
CTGAAAATTTGGTCTCGCGAGACGGTTACGGCAGTCCCGTCCCGCGTCAG
CCTGCTCATCTCCATATTCAGGCTGAATCTGATGCTCACTTACGGGATTC
CTCCCGAGTTCCGGGGCGGCGTCCATATATTTATTCAAAACCGCCATACG
CCATCGGGTCAGTCCCAAGTTTACCGGGTCACACAAATGCGTACCGATGG
CGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCAGTAAACCTCATGGTAG
TTCCGAACGAGTGCTGCCTTAGCAGGTCACTATAGCCCAATTAATATACG
CCTCTCTTTCCCACACCCACTTCTGTATTGGTATGAAGTGGGCATATTGA
AAGTACCGGCGTTACTGTACCTCCAATCGCCATCGGGTGTTTCCCGAATT
TATCGGGTCCCGCAACTGCGTAGCAATGGCGTTCACTGCCGAGAGTCCAC
CGGCACAGGGCCAGTAGTCCTCAAGGTAGTTGAAGTAACGGGTGCTGCCT
TTGCAGGCATCACCATGCACCAATCAATGTGCTCCTCCCTTCTCCCACAC
CCAACAATGGTATGTAGTGGCCACGTGCGACACAGAATGTACTTTATCCG
GGGCATTACGACCGTATTTTTAAGATTAAAAGCTTTCAGTAGTACACGTG
AAAAAGAAAAGGGGACAAACTGGCGGAACTGGCTAGCCTACGACTAGAGA
ACGCGTGCCGTAATGAGTCACTGGATTCCTATCTGACTACACCAGACGCC
GAACATTTCCGGAAGCTGTTTGTAAATAGTACAAGACCCACCCTTGGATT
TTAAAACAGCTACGGTACGCCCAGCACACATAGAACGGGAACATTTTTTT
GTACACGTAGCATTCTCAGATGCGACTTTTTCGGCAATACTTAGGGACTG
ACTGGCTTTTTTTGTTTTGTACGGTGGTTTGTTTATTGGCAGCCCAAAAC
TACCCCTGATGTTGCTTGCCCAAGTGCTTGAGGAGTAACAGCAGGCTCAG
TCCTCTATGGCAAGGGGATATCCGAGCCGCAGCCAAACTCGTTAACTAGT
ACAGTACAAGCCCTCCCTGCTTCAGTATCGAGTGGTCGAGGAGTGTTCGT
TCTACACCCTCTCCTCGGCGGGGGACCAAAAAATAGTCGCGAAACACGAC
ACACTTTGAGCTTTCGAGATGAATGCTGTACGGGACTGGCAGGACGTGAC
TGTTGCGCGAATATATGTATGTCTTAACCGTTGGTTGATCTGATCGTATT
GGTGCTGTATGTATGTATGGTCGCACATATAGCAAGAGTATGGATCAACC
GGGTAAGGTTGCCAGTCCTGCACGTGGTTAGCTGAACAGGAAAAATGAAT
ACTTCCCTGTCCGCGTTCGTGCCTGAGAGTTTGGTCTCGCGAGACGGGTT
CGGCGGTCCCGTCCCGCGTCAGCCGGCTCATCTTCATACTAAGGCTGCAA
TCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCGTT
TCATAATGTGTAACCACCATACGCCATCGGTTCAGTCCCGAGTTTATCCG
GTCACGCAATTGCGCACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCGC
GGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGGGCTGCCTTGGCAGGT
CACCATGGACCAAATAATATTCGCCTCCCTTTCCCACACCCACTATCGGT
ATAAAGTGGTTATAGCATGTTGAAAGTACCGGCGTATGTGCTGTTGTGAT
CTCTCTTGGTGTCTTTTGTTCAGCATACGTGTACGGCACCGCGATCACTT
GGCCTTTTTGTATCTATATTTCTATATGTTTCTCTTTCACCATAACTTCT
GCTGGTGACCGTGTCATCCCGCGGCGTGCGCATCATCGCTTGTTTGCTGG
GTTTTTCCCCCCCGACGACAGCCTCCATATCCTGAGCATCCGCCTCTTCC
TCCTTTTTTTTATTTTACCCTTGCGCGTCGGCGCCCGGTAGCAGGCACCG
GCCCCGCAGCCGCCGCGGAATGCAACGTGGGATATTTTCAACCCCGCCAC
GGAAGACTTCGTACTGCTGGACCCGGCTACCCCGTGCTTCTGACATCTTG
ATGGACTACCTACCACCTTCCCACGCATGCGTACCGTACCCCGTGATGAT
ATGATATGATACCGTACTCGGAGACTGCAGCGTAACTTAAACGCACTGTA
CTGTACTGTAATTGTTAATTTGTAGTCTAGTAGGTTTGTTGTGACCCATT
TTGTTGAAAGGTTTTTTCGAATACGGCGAGGAGATATGGGAATACTCCCC
CCCCTTCCCGATACTCCGGAGAATTAAACATTGCAAGCAGCACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig809:328688..334031+

>mRNA_F-serratus_M_contig809.19488.1 ID=mRNA_F-serratus_M_contig809.19488.1|Name=mRNA_F-serratus_M_contig809.19488.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig809:328688..334031+ (Fucus serratus male)
ATGTCGTACCACACAAAGACGGCCAACGATCAGGCGATCAATCTTGAGGA
TTTCCCTAAGGAGCGAACAAAGGCATCGAGGGACATAGCCCCCGTTGCAG
CGGTCCGTCCCATCAGAGTGCTTCCTCCTGCCCTGGACCGCCCACCGATG
TCGTACCACACAAAGACGGCCAACGATCAGGCGATCAATCTTGAGGATTT
CCCTAAGGAGCGAACAAAGGCATCGAGGGACATAGCCCCCGTTGCAGCGG
TCCGTCCCATCAGAGTGCTTCCTCCTGCCCTGGACCGCCCACCGGCACCG
GCCCCGCAGCCGCCGCGGAATGCAACGTGGGATATTTTCAACCCCGCCAC
GGAAGACTTCGTACTGCTGGACCCGGCTACCCCGTGCTTCTGAGCACCGG
CCCCGCAGCCGCCGCGGAATGCAACGTGGGATATTTTCAACCCCGCCACG
GAAGACTTCGTACTGCTGGACCCGGCTACCCCGTGCTTCTGA
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