mRNA_F-serratus_M_contig809.19485.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig809.19485.1
Unique NamemRNA_F-serratus_M_contig809.19485.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig809.19485.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 6.070e-8
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:   41 VLCLRVETCSSRVGMADQASSGSSLCLDALETALSQVDCSEWYTSTLLLQLASLQVCALCRDLRPLHLTV 250
            + C+ V T   R G      +G S CLDAL  AL+Q    EWYTST+ LQL SL++CA CR +  L L V
Sbjct:   21 LFCIMVST---RSGRHTNVETGPSRCLDALIIALNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNV 87
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BLAST of mRNA_F-serratus_M_contig809.19485.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 8.530e-7
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 2 
Query:   95 ASSGSSLCLDALETALSQVDCSEWYTSTLLLQLASLQVCALCRDLRPLHLTV 250
            A +G S CLDAL  AL+Q    EWYTST+ LQLASL++CA CR +  L L V
Sbjct:    5 ARAGPSRCLDALIIALNQASGGEWYTSTMQLQLASLELCASCRSMHLLKLNV 56
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig809.19485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA08_9PHAE6.070e-847.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI8.530e-757.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig809contigF-serratus_M_contig809:145774..152291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size261
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig809.19485.1prot_F-serratus_M_contig809.19485.1Fucus serratus malepolypeptideF-serratus_M_contig809 145774..152209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.112622-CDS-F-serratus_M_contig809:145773..1459281622932412.112622-CDS-F-serratus_M_contig809:145773..145928Fucus serratus maleCDSF-serratus_M_contig809 145774..145928 -
1690964296.2004244-CDS-F-serratus_M_contig809:145773..1459281690964296.2004244-CDS-F-serratus_M_contig809:145773..145928Fucus serratus maleCDSF-serratus_M_contig809 145774..145928 -
1622932412.1268697-CDS-F-serratus_M_contig809:152187..1522091622932412.1268697-CDS-F-serratus_M_contig809:152187..152209Fucus serratus maleCDSF-serratus_M_contig809 152188..152209 -
1690964296.211562-CDS-F-serratus_M_contig809:152187..1522091690964296.211562-CDS-F-serratus_M_contig809:152187..152209Fucus serratus maleCDSF-serratus_M_contig809 152188..152209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932412.1476038-UTR-F-serratus_M_contig809:152209..1522911622932412.1476038-UTR-F-serratus_M_contig809:152209..152291Fucus serratus maleUTRF-serratus_M_contig809 152210..152291 -
1690964296.223252-UTR-F-serratus_M_contig809:152209..1522911690964296.223252-UTR-F-serratus_M_contig809:152209..152291Fucus serratus maleUTRF-serratus_M_contig809 152210..152291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig809.19485.1

>prot_F-serratus_M_contig809.19485.1 ID=prot_F-serratus_M_contig809.19485.1|Name=mRNA_F-serratus_M_contig809.19485.1|organism=Fucus serratus male|type=polypeptide|length=59bp
MADQASSGSSLCLDALETALSQVDCSEWYTSTLLLQLASLQVCALCRDLR
PLHLTVGLD
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mRNA from alignment at F-serratus_M_contig809:145774..152291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig809.19485.1 ID=mRNA_F-serratus_M_contig809.19485.1|Name=mRNA_F-serratus_M_contig809.19485.1|organism=Fucus serratus male|type=mRNA|length=6518bp|location=Sequence derived from alignment at F-serratus_M_contig809:145774..152291- (Fucus serratus male)
GTAGAGGAACAAGCGAGGGCAGGAGCAGTACGAGTATTGCGTCTTGTGTC
TAAGAGTGGAGACTTGCTCAAGCAGGGTAGGCATGGCGGATCAGGCTTCA
TCAGGTGAGAGTCATATCAACAAAGTTCGGGTCATATAGGTGAGACATGG
TCCACTTAACTGTATTGATAGTAGGTGTTGGAAACGATGGGGCACAAAAA
TGTTCCATGAGGCGCCGTTAGGAGGCAGCACCCAGTTGGAGATACGTTTA
GGACTACTGGCCTTGTTCCGCCGGACTACCGACGGTAAAAGCCATCGGTA
CGCATTTGCGTGACCCAATAAACTCGGAACTGATACGATGGTGGTTGGCG
GTATAGATGGAACCCATCGCGGAAAGTAGGAGTATGGAGTGGCGTCCGTG
AGTAAGGGGCGTTTTACACCTCAAAAAAGTTTGGAAAGTTTGGAATATTT
TCAAACTTTCCAATTCCAACGTTCCACAATTTGGAATTGGACGAGCACCT
CGAGGTCGGTGCTTGTCCATTTCCAAATTTGGAAAAGTTGGAAAGTTTGG
AAAGTTTGGAAAAACACGCCCGTGCTGTTGCAACCCCGGTACACAGTCCT
CTCCGGATTTGCAGCAAAGGAAAACAAGGATAGGTCAGCTCAATCTGTGC
AGGATGAAAAGCTTCCTTATCCCCAGCGGCAACGTGATCGGGCTTCTTTC
TTTGTTGAGCATGTAATCCCGCTCGTGGTCAGCTGAACAGGGGGAATAAA
TACTTTCCCTGTCCGCGTTCGTGCCTGTGAAAATTTGGCCCGCCGGCACA
GCGCTTCAAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGA
CCAGTTATGATGCGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGG
GCATGTTGAAAGTAGCGGCAGGGAAACAGCTACGCGGATGAGTCTACCAC
AGGAGAAATCTGTAGCGCGCCGGAATCACCTACAGCACGTTGGGAGATTT
TTTTACATAGCTAGACTATCTGTACAAAGTTGTTGTTTTTTTTAAATGAT
AATCATGCAGTACTAGGGTACCGCTGTAGACCCTACAACAGCTCAGAAGG
TATAGAGGTCTAGTCTAGGCGCGTTCTGATTTTTATTTTTAAAAGCTCTA
TCATCGCGGTGTTCGCATTACGGGACGCGGTCGCGGAGTAGAATCGTAGG
CCCTCCACCCAAATACTGCGGTATCCCACTCTTCTAACGAATGCGGTCTG
CTCTTCGATCTATTGACATCTACTCGCGGCGTTCTTGTGTACTGTTGTGT
CTTTGTGTCGTTCATGAGTCCTGAGAGCTGAGGGTTCAAAAAGGGAAAAT
GTGTTCAAAATATCCCGAGGCGTATCATACTTTTTTGAGCGGGGTTCCCT
TTTCCAACCATTTACCTCGACTAGCTGACATAGTAGGTCGATTTTCCAAC
CTTTCCAAAATTTGGAAAGTTTATTTGCTATTATATCATGTGGAAACGTC
TGTTTGAGGTGTAAAACGCTTTCAAGTACAAGATTCAGCGTATGTACGGA
GAAAGAAGCGGGCTGACACGGGCAGGGGCGGCTGAACCCGTCCCGCGAAA
CCAGGTTATCAGGCCATGTACAGGGAGAAATCGTGTCTCGTGTTTATCCG
ACCCCAAGCAGGATTGGTTACCATACCGGTTGATGTCCAGTCTGCTAGGT
GGCGCATGATGTAATCAACTTCCAATGGCCCATACATTGTTGTACTGATA
GTTTTAAGGGTAGAGACATGAACTGATGGAAGAAAAGGATCGTCATTGGA
ATCGCTGTTTATTTTTCCGACGGTCTTCAATGACTCTTTCAACACGCCCA
CTGTATACCAATAGTGGGTGTGGGAAAGAGAGGCGTATATTAATTGGTCC
ATCTTGACCTGCTAAGGCAGCACTCGTTCGGAATTGTCTTGAGCTTTACT
GGCCCTGTGCCGGTGGACTCTCGGTAGTGAACGCCATCGGTATGCAATTG
CGTGGCCCGATAAACTTGGGACTTCGGTGGCGTATGGCGGTTTAATATAA
ACATATGGACGCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCATAT
TCAGCTTGAGTGTGTAAATGAGCAAGCTGGCGCGAGACGGGGCTGCCGAA
ACCATCTCGTGAGACCAAATTCTCAGGCACGAACGCGAACAGGGGAGTAT
TATTTTCCCTGTTCAGCTGACCACGAGTAGGATTGGCAACCTTAACCGGT
TGATCCATACTCCTGCCGGTACTTTCAACATGCCCATTTCATACCAATAG
TAGGTGTGGGAAAGAGAGGCGAATATTAATTGATCCATGGTGACCTGCCA
AGGCAGCACCCGTTCGGAACTACCTTGAGTTTTACTGGCCCTGAGTCGGC
GGACTCTCGGCACTGAACTCCATGGGTACGCAGTTGCGTGACCCGATGAA
CTCGAGACTGACCCGATGGCGTATGGCGGTCTCATAAATGGACGCATTCG
CGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTAT
GGAGATGAGCAGGCTGACGCGGGACGGGACGCCTGAACCCGTCTCGCGAG
ACCAAATTCTCAGCAGCACGCACGGGGACAGGGGATTTTTAATTTTCACC
GTTCACCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTAATCCA
TACTCTGCTATATGTGATGACTATACATACAGTACCGGCCCACTCATAAG
AAACAACTTTTTAAGAAATTAAGCCTTAGATTTTTGAAAAAATAAGAAAT
GAGCCGGAAGAAATTGCGTTCAGAAGAAGAAGAACGATATGAAATGGAGT
AGCAAGAAATCGATCAATATCGTGCTCCCGGTGATAAGAAAGGGGTGGCA
TCCTGGTAGAGTGTGGCTTACGGCCCTCTCCGCCTCTCTGCGGATGATGA
TTGTGTGTTCGTCTTCATTTACTCCCTCTAATCCGAGATATAAGCAATGT
TTGGACAAGGTTATATTTCGAATCAGAGGGTGTCGTTGTTTCTTCTTTTT
TCCCTGTAAAAACACCCTCTCTAGATCGGTAAAAATTATCGTCAGTGGCT
GCGACGATAGTTTTTGCTGACTAGCTAATTAGATGAATATTTTATTGAAA
CCAAAGTACAATTAGTCCCGCCCTACATCGTGAAGATCCGAGCTGGGACT
GACGACAGATCGGAAATATAACAACGAACTTTTCGATCGAGACAAGAGTT
GAAGACACTTTGGGTCATCATGAGGGATGGGAGGTTGCATGAGAGTTTGA
TGGCCCACTTGATCATTCTTTTGATGCACTAGAGCTCCTCCTTTGTATTC
CTGGCCACCGCGGGGTCATTGCTCGGTCTTCGCATGAGGAGTACTTGTGC
GTCGTAGCCCTGACAAGTTGAAGCGAGGAACCCAGTTCTTTCCGCGTGCC
TCTTACCTCCTCGTGTGATCTCCTACTGCTGCTCGTCTACTTTCAGGTGA
ATGCTGTTGTGTACTTGGATATGAAGATTCCGCATCATCACCATGGTCCT
CTTGTCCTGTTTTAATGATGTATTGTATTCGTCTTTATTACTGAATGATG
TACTGTATTCGTGTTTGGTGATGTTCTGTCTTGTCTGTTTTTTCTTTTCT
GGTGTCCCTGCATGGCGATTAATGTAAGTGTACAGTATAACGGTGGGCTT
CTCCCCGACATTATACTGTTGACCCAATGTTATATGCATCGGGGAACCCG
TTTAAATGTCATGAATAGGTTTTGTATCTGCAGCCTTTGAGCCCACCTAA
ACGTTTTGTTTTTTTTCCCCCTACCGGGGACGGATCAGAAGGTTTAGGCG
CGTTCGCATTTTTCTTTAAACAAGATATGGGGTTGGACGTGAGAACAAGA
AATGGCCTCCTGTCTGTACGGACAGTACACACGTATCTGTACAGCTGACT
GATTCTACGCCTACTCGTTCCTCGAAAAGTGTCAATGACCTGTGATACGA
TGATTGGTCTATAACCCCTCCGCATAAGGAGACGTTTTAGGAGTAAAATA
GGCGTTATTGTTATATGACAGTGCCGTATTTTAGACGACACGGTCCACCT
GTTTGCTTAGTCTTTTCTTCCCCGAGTTTCTAGCAAGCAACGTCACGGAG
AAAAAAGCAATGACTGCCGTAAGGCCAACCTTTATTATGGGAGACAGAAA
CGACAGTAAAAAACAAAAAAGTGAAATTTCTGTGGCGTGGTGAAATTTTT
GTAAACGTCGCACTATGGGCACCGAAACCCAGAAATTTCACCCTACACAA
ATTGCGAATTTCTGTGGGAGGCTGTTTTCCTCTGGCCACCTACAGAAGTT
AGGCAAAATTCTGTAGGTAGCTCGACGAGTTTATTTCCACAGAAATGATT
CACACCTTCCAAAAACGATTGGGAGGTCGGGACTGCAGCATCCCTCCTAT
CAAATATCGGCAAAGAAGAGCTCGCGAGTGCTGTTGTACGATGGGTGCCG
AGCAGCAGTAGTTGTGCGATGATCGCCGGAGCAGCAGATTTTGAGGAAAT
TCATAGAAGCTGTTGAGGTGATGGGCCCTGACAAGCAGATTTGGAAAAGA
ATTTATAACATATGTTGAGGTGATGGGCCTGGACAAGCTGATCGCCGGCG
GCGGGAGCGGTTGAATGGGTGGCGCCGAAGATCAAGCAGGGATGGACTGC
GTGTACGAGCGTCCGATGGCTCACCATCGAAATGATGTCGCTCTGCCCAC
TCTATTGGCGATGTGTGTGTTCGTAATTAAGTACTAAACGACCCTGTCTC
GCCAGACCAAATTCTCAGGCGCAAACGGGGAGAGGGAAACATGTCGGGGA
TATATCCATCATATTCCCCTGTAGTTTCGCTGTCGGTATAACACAGCAGT
ATGGCATATATGTGTTGTTAGGTTAAGTGATCTGTACGGTTCGCAATCAC
AGCAGATCTACAGTTGGGGTGTAGAAGTATATTCGTATCGTAAACTTTGC
CTCGGGACTGTCACAAATACTATCGAAACTCTTGTGTTTTGATAAGAAAG
TATTTGTACTGATGTCCTAGGGTCTAGGGTCCGGAAATAATTAGTTACTA
AACTTCCGGTAGTTTTATTATTATTTTAGTGTTATTTGAGACGGAAGTGG
CCACATGCATCTGTCACTCTCCTCTCCATCACCAAAACCCTGACTTTGAG
GGTTAGTCAGTAATAAAGGCATCTTCTTATCTTCTTCCTTTCGTTCTTGA
CGCACATCGAGAGTCGCTACCGCGCTCCTGTGAAACCTCTGCTCACAGAC
TCTCCGACGAGTCTGCTAAAATTTACAGCACAGTAGATCTCCCTGCTAGC
GCTGCACACATTACCTTCTCAAAATATTATTTTTCCCTGTTCAGTTGACC
ACGAGCAGGACTGGCAACCTTACCCGGTTGATCCATACTCTATGTGTACA
TACTTGCACCTGTCTTTGTGCGGTGATGGGTGGCCAAAAATGCCGGGGTT
AAGCCGATATGCTCCCCGTTCTTTGTTGTATTTTTCCTTAATCCCATTAA
CGACCGACTAAAGTTTTTACCCACGTTTTTTTAGGCCACAGAATTTACAA
ATTTCTGTAGTTTGTTTTTCTGTTGTTTTTTCGTTTTCCATAAAGGTTGG
CCTAAGAAGTAAGAGGAAATTACTGCGCTGGAAACAAGAAACGGGGGACA
TAAGAAATAGGTGCAATATTCTTGGCTAGCAATAAGAAATGGTGAATTAA
GGAATTGCGCTTGCATCCGCGGGGGCAATAAGGTTTAAGCCTTACTCAAA
ATAGGTGTTTCTTATGAGTGGGCCGGTACTGTACATACATAAATACATAC
ATACTCTTGCTATATGTGTGACTATGCATAAAACATCCTGCTGAAAGGAT
GAAATACAAACACGTACTGAGTACATGTAGCTAAGGTTTTTTTCGATGAT
ATTTATTATCGTATATTACTATTACTATAGTACTGTACTGCATTGTACTG
TGTACACTAATAAATTATGTAACACAAGCGCTACTGGTACAGTATGTACC
GTATAGTTGTTGTTGTTGTTGTTGTTTTCTTCACATTAACCGATCAGGCC
TCAACCAACATAATGCATCGTAAGCGGCTGAAACATAATCTGCTATTTCC
CTCTTTTGCATGGGTGTCACCTTCTCGTACAGGCCCTAGTATGTGTCTGG
TTTACAAGCAAAATAACATCTTCATTGACTTGATACCAGTAAGTCTGTGC
GGATTTCTCCGTTGATGGTGTGGCTTTCTTATTCCAACATACTGCATCGT
AAGCGGCTGACACACGATGTGTTATTTCCCTCTTTTTTGCGTGGGTGTCA
CCTTCTCGTACAGGCTCTAGTCTGTGTCTGGATGCCTTGGAGACCGCCCT
CAGTCAGGTGGACTGCAGCGAGTGGTATACATCGACCTTACTGCTCCAAC
TGGCGTCCCTGCAGGTCTGCGCGCTGTGTCGGGACTTGCGTCCTTTGCAT
TTGACCGTAGGGCTTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig809:145774..152291-

>mRNA_F-serratus_M_contig809.19485.1 ID=mRNA_F-serratus_M_contig809.19485.1|Name=mRNA_F-serratus_M_contig809.19485.1|organism=Fucus serratus male|type=CDS|length=354bp|location=Sequence derived from alignment at F-serratus_M_contig809:145774..152291- (Fucus serratus male)
ATGGCGGATCAGGCTTCATCAGATGGCGGATCAGGCTTCATCAGGCTCTA
GTCTGTGTCTGGATGCCTTGGAGACCGCCCTCAGTCAGGTGGACTGCAGC
GAGTGGTATACATCGACCTTACTGCTCCAACTGGCGTCCCTGCAGGTCTG
CGCGCTGTGTCGGGACTTGCGTCCTTTGCATTTGACCGTAGGGCTTGACG
CTCTAGTCTGTGTCTGGATGCCTTGGAGACCGCCCTCAGTCAGGTGGACT
GCAGCGAGTGGTATACATCGACCTTACTGCTCCAACTGGCGTCCCTGCAG
GTCTGCGCGCTGTGTCGGGACTTGCGTCCTTTGCATTTGACCGTAGGGCT
TGAC
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