mRNA_F-serratus_M_contig808.19476.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig808.19476.1
Unique NamemRNA_F-serratus_M_contig808.19476.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig808.19476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig808contigF-serratus_M_contig808:153735..154023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue6.1e-07
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size290
Cds size264
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.8672283-UTR-F-serratus_M_contig808:153734..1537591622932409.8672283-UTR-F-serratus_M_contig808:153734..153759Fucus serratus maleUTRF-serratus_M_contig808 153735..153759 +
1690964294.9832103-UTR-F-serratus_M_contig808:153734..1537591690964294.9832103-UTR-F-serratus_M_contig808:153734..153759Fucus serratus maleUTRF-serratus_M_contig808 153735..153759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.8815289-CDS-F-serratus_M_contig808:153759..1540231622932409.8815289-CDS-F-serratus_M_contig808:153759..154023Fucus serratus maleCDSF-serratus_M_contig808 153760..154023 +
1690964294.9953659-CDS-F-serratus_M_contig808:153759..1540231690964294.9953659-CDS-F-serratus_M_contig808:153759..154023Fucus serratus maleCDSF-serratus_M_contig808 153760..154023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig808.19476.1prot_F-serratus_M_contig808.19476.1Fucus serratus malepolypeptideF-serratus_M_contig808 153760..154023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig808.19476.1

>prot_F-serratus_M_contig808.19476.1 ID=prot_F-serratus_M_contig808.19476.1|Name=mRNA_F-serratus_M_contig808.19476.1|organism=Fucus serratus male|type=polypeptide|length=88bp
MAVKLYEDLARKASLRQARFLSRIEVLRRYSVGDKWLSSSGLYSLVALWS
VVMKLDRSLLVEEFYKISLGGVTETEDMQKAGRLLFLL
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mRNA from alignment at F-serratus_M_contig808:153735..154023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig808.19476.1 ID=mRNA_F-serratus_M_contig808.19476.1|Name=mRNA_F-serratus_M_contig808.19476.1|organism=Fucus serratus male|type=mRNA|length=289bp|location=Sequence derived from alignment at F-serratus_M_contig808:153735..154023+ (Fucus serratus male)
CGATCTGGTGCTGGAGTATCTTCAGATGGCCGTCAAATTGTACGAGGATC
TCGCGAGAAAGGCTAGCTTACGCCAAGCTCGCTTCTTGTCTAGAATCGAA
GTGCTTCGTAGGTACTCGGTTGGTGACAAATGGCTCAGCAGCAGTGGGCT
TTACTCCCTCGTGGCCTTGTGGAGCGTGGTGATGAAGCTCGACCGGTCTC
TTCTCGTGGAGGAGTTTTACAAGATATCCTTGGGAGGCGTGACTGAGACC
GAAGACATGCAGAAAGCTGGCCGTTTGCTTTTTCTTTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig808:153735..154023+

>mRNA_F-serratus_M_contig808.19476.1 ID=mRNA_F-serratus_M_contig808.19476.1|Name=mRNA_F-serratus_M_contig808.19476.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig808:153735..154023+ (Fucus serratus male)
ATGGCCGTCAAATTGTACGAGGATCTCGCGAGAAAGGCTAGCTTACGCCA
AGCTCGCTTCTTGTCTAGAATCGAAGTGCTTCGTAGGTACTCGGTTGGTG
ACAAATGGCTCAGCAGCAGTGGGCTTTACTCCCTCGTGGCCTTGTGGAGC
GTGGTGATGAAGCTCGACCGGTCTCTTCTCGTGGAGGAGTTTTACAAGAT
ATCCTTGGGAGGCGTGACTGAGACCGAAGACATGCAGAAAGCTGGCCGTT
TGCTTTTTCTTTTGATGGCCGTCAAATTGTACGAGGATCTCGCGAGAAAG
GCTAGCTTACGCCAAGCTCGCTTCTTGTCTAGAATCGAAGTGCTTCGTAG
GTACTCGGTTGGTGACAAATGGCTCAGCAGCAGTGGGCTTTACTCCCTCG
TGGCCTTGTGGAGCGTGGTGATGAAGCTCGACCGGTCTCTTCTCGTGGAG
GAGTTTTACAAGATATCCTTGGGAGGCGTGACTGAGACCGAAGACATGCA
GAAAGCTGGCCGTTTGCTTTTTCTTTTG
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