mRNA_F-serratus_M_contig808.19475.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI) HSP 1 Score: 119 bits (297), Expect = 5.460e-29 Identity = 62/104 (59.62%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPTE-ATQVADDCCMLP 309
F A+EA R++S+ LRCL+VLDNVW+VEVVNAFA+TG H LVTTR+R VI ++ V EVGDM +E+ LE+L K S A GPLP E A QVA DC MLP
Sbjct: 340 FSGAEEALRHLSSVCAEDGLRCLVVLDNVWNVEVVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLP 443
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 6.820e-16 Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPT-EATQVADDCCMLP 309
F + A ++ K + LRCL+VLD+VWD ++V F G H+LVTTR+ VIP + V EV + E LELLK S A +PT E +VA DC LP
Sbjct: 339 FVDVEHAVSHLEGVRKERNLRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEMLTNAEALELLKNASRATAAIPTNEGLKVAKDCGFLP 442
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5L982_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L982_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.660e-14 Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGPLPT-EATQVADDCCMLP 309
F + ++ ++ LRCL+VLDNVWD E+V F TG LVTTR+ ++P V + + E LELLKK S A +P E +VADDC LP
Sbjct: 298 FRDVEHVVSHLVGVLEQGNLRCLVVLDNVWDREMVPLFLRTGFRCLVTTRDVAMVPRHLWGTCTPVDMLTEAEALELLKKASRATSSIPRDEGLEVADDCGFLP 401
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.630e-12 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
FDS ++ ++++A + L+VLD+VW+ EVV AF G+ LVTTR+R+++ ++E+GDM ++E LELL KTS G + T+ T+V D C LP
Sbjct: 344 FDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVG--VPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLP 448
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 1.070e-11 Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
DS ++ ++++A T + L+VLD+VW+ EVV+AF G L+TTR+R+V+ R+ E+GD+ +EE LELL+KTS A G + T+ T+V C LP
Sbjct: 350 LDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRL--ELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLP 454
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.920e-11 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
D ++ ++++A T L+VLD+VW+ EVV+AF G L+TTR+R+V+ R+ EVGDM +EE LELL+K+S A G + T+ T+V C LP
Sbjct: 313 LDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRL--EVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLP 417
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 3.710e-11 Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP---LPTEATQVADDCCMLP 309
DS ++ ++++A T+ L+VLD+VW+ EVV+AF G L+TTR+R+++ R+ E+GDM +EE LELL+KTS P + + T+V C LP
Sbjct: 152 LDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRL--ELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLP 255
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 1.280e-10 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARG----PLPTEATQVADDCCMLP 309
DS ++ R++ A T L+VLD+VW+ EVV+A G LVTTR+R+V+ R +E+GDM +EE LELL KTS G + T T+V C LP
Sbjct: 244 LDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTR--CLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLP 348
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 1.750e-10 Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
D ++ ++++A T L+VLD+VW+ EVV+AF G L+TTR+R+V+ R+ E+GDM +EE LELL+KTS G + T+ T+V C LP
Sbjct: 367 LDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRL--ELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLP 471
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 5.100e-9 Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 1 FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRERTVIPPMYRRVMVEVGDMEKEEGLELLKKTSYARGP----LPTEATQVADDCCMLP 309
+S ++ ++++ L+VLD+VW+ EVV+A + G+ LVTTR+R+V+ ++E+GDM +EE LELL KTS G + T+ T+V C LP
Sbjct: 108 LESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVG--VSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLP 212 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig808.19475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig808.19475.1 >prot_F-serratus_M_contig808.19475.1 ID=prot_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=polypeptide|length=103bp FDSADEAARYVSATIKTKKLRCLMVLDNVWDVEVVNAFANTGIHALVTTRback to top mRNA from alignment at F-serratus_M_contig808:152719..153233+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig808.19475.1 ID=mRNA_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=mRNA|length=515bp|location=Sequence derived from alignment at F-serratus_M_contig808:152719..153233+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig808:152719..153233+ >mRNA_F-serratus_M_contig808.19475.1 ID=mRNA_F-serratus_M_contig808.19475.1|Name=mRNA_F-serratus_M_contig808.19475.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig808:152719..153233+ (Fucus serratus male)back to top |