mRNA_F-serratus_M_contig807.19473.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig807.19473.1
Unique NamemRNA_F-serratus_M_contig807.19473.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig807.19473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig807contigF-serratus_M_contig807:210213..213685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size680
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig807.19473.1prot_F-serratus_M_contig807.19473.1Fucus serratus malepolypeptideF-serratus_M_contig807 210213..210712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.6183915-CDS-F-serratus_M_contig807:210212..2105021622932409.6183915-CDS-F-serratus_M_contig807:210212..210502Fucus serratus maleCDSF-serratus_M_contig807 210213..210502 -
1690964294.8936143-CDS-F-serratus_M_contig807:210212..2105021690964294.8936143-CDS-F-serratus_M_contig807:210212..210502Fucus serratus maleCDSF-serratus_M_contig807 210213..210502 -
1622932409.661546-CDS-F-serratus_M_contig807:210684..2107121622932409.661546-CDS-F-serratus_M_contig807:210684..210712Fucus serratus maleCDSF-serratus_M_contig807 210685..210712 -
1690964294.9035683-CDS-F-serratus_M_contig807:210684..2107121690964294.9035683-CDS-F-serratus_M_contig807:210684..210712Fucus serratus maleCDSF-serratus_M_contig807 210685..210712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932409.6774707-UTR-F-serratus_M_contig807:210712..2108251622932409.6774707-UTR-F-serratus_M_contig807:210712..210825Fucus serratus maleUTRF-serratus_M_contig807 210713..210825 -
1690964294.9125106-UTR-F-serratus_M_contig807:210712..2108251690964294.9125106-UTR-F-serratus_M_contig807:210712..210825Fucus serratus maleUTRF-serratus_M_contig807 210713..210825 -
1622932409.694578-UTR-F-serratus_M_contig807:213438..2136851622932409.694578-UTR-F-serratus_M_contig807:213438..213685Fucus serratus maleUTRF-serratus_M_contig807 213439..213685 -
1690964294.9240677-UTR-F-serratus_M_contig807:213438..2136851690964294.9240677-UTR-F-serratus_M_contig807:213438..213685Fucus serratus maleUTRF-serratus_M_contig807 213439..213685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig807.19473.1

>prot_F-serratus_M_contig807.19473.1 ID=prot_F-serratus_M_contig807.19473.1|Name=mRNA_F-serratus_M_contig807.19473.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MEGKGHSSTGEIRYFDAFAVALNEARVSEGGRWYVSTISLQLASLRLCVV
CRNAKTLHFRVQERTPASLYSPAKERQTRVPTLRARHVTWCIPQPPRAQR
TSPLES
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mRNA from alignment at F-serratus_M_contig807:210213..213685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig807.19473.1 ID=mRNA_F-serratus_M_contig807.19473.1|Name=mRNA_F-serratus_M_contig807.19473.1|organism=Fucus serratus male|type=mRNA|length=3473bp|location=Sequence derived from alignment at F-serratus_M_contig807:210213..213685- (Fucus serratus male)
CGCGACCACAACGTTGCGGTAGCTGTGAATCACCTGTCTGAAATATAGTG
AATTGGATCAAGTTTAATCATTCTGGTGTCATCAAACATTGCTCGCCGTC
ACTTAATTAAAGAGCTTCTGCTGTTCCGGTGCCAAGGAGGCACCTTTTAT
TTCACCCCAGCAGCGAAACAAGGCAGCTCCTGTGACTTACACCAGCATGA
AGTGCCCTGACAGCAAGTGAAAGAAACAGTTGTCAACGAGGCGTAGGGTG
AGTACTTATCCCACAACGATTCGAAGGTATATTCGGTCGATATCGCACAC
GACAAGTAGGGAACACTTATTTCAAACTAGAACTTGTACATAGCACAAAT
ACATCCGAACTACCAGTACAAGACGGTTGTTTTCAGACACAGATTGACTT
TCCAGTATGATAGTACCCCGTATGGAATAATGAAACGAACCAAATCAGAG
GGCCTGATATACAATCACTTGAAAACTTGGCAAACTGTTTCTGTCTGCCA
AGTAACTTGCGAAATGTGCAAAATAACTACATCCGTATTTTCGTAGAGTT
TAAAGAAAAGTCAGAACGCGAAAATCAGAACGCGCCTGTACCTTCTGAGC
TTTACGTGACGGACGATTAATTACGTGAAGCCTCCGTGCGGGCACTTACA
ATATACTTGGCAACTCCCAAGTACGAGGTGTACTTTTAAAGAAAAATCTG
GACGTATCTAGACCTTCTGAGCATCCCCCTCTTCATCGCATTTAAACGGG
TTCCCCGATGGTAGTAACATTATTGGGTCAACAGTATGATGTCGGGGAGA
AACCCACCCTTATACAGTGTGTGTGTTTTCTTCCCATTTATTCTGGAAAT
CAAGTTCGTTGGACGTACCAGCCGATGTCACACAGGACGAAGGAAGGTCA
CACAGGATTTCTCATCCAACGCAGACCTTAATTTTTCTCGCGAGAAGGAT
TCAGCCGTTCCTTTCCCTCGTCGACCGTGAAGTTGAATTTTGTGTACTAA
CGATACGATTTGATCGTTCTCCACTTGTTGGGCGTTTTTATTTTATTTTT
ACCCGTTTACCGGGGATTCGAGCTCACGTCCTAACGTGTCAGCAGGTTAC
GAGATTACCTCTGAGCTACCGGGGAGAAACCCACCGTTACACTTACATTA
ATCGCCATGCAGGAACACTAAACACCAGACAAAAACGAAACAAAAACATT
TTTAGTACTGGTACATAGTTTATAATAAAAATAGGTTTATAATAATTTAC
CGTACAGTAATAGCGCCATCGACCTTTATATAATAAAGGTTTATAGTCTA
GAACACAATGTTACAATATTGTAATTTGAAATACATACAGTATTTACCTA
TTGGTATTTACATCTTGTTTACAGGTCCGCAGGGACATTCTACGACGTGT
ATAAAATCGTTGGATGTTGGATTGCACGCGGCGATCAATACCCGCGAACC
CAGCGTGACTGTTTGTATAACAACTGACTTTTGTTCATGGTGGGCAGTCG
AAGTATCTAAATATTGGCGTGCTTTCTATAACAACTGAAACTCCTGACTG
TTTGTAATCTGCAATATGATTACCGGTAGAAGGACTACAGCGCTTCGCTC
TTGATGCGAGCTTCTGGGCACGTCCCAACGATTGTAGCCTTCAGAACGAC
TGTGTTGCGATGCTCGTTGTCCTATAGCGAATACATGATGCAGCGACTGC
TGCTGGAGACGACGCGACTGCGATGTCCGGGAGTAGTCTCAGTTCAGAAA
CGGTTGAAAATTGAGAGCGCTGCAGCTCTTCGCTCTTGGCGCGAGCTTTT
TGTCACGAGATTCTTGGCACGTCGCAAGCTCGAACCGACTGTGTCACGAC
AGTCGTACCCAAGAAGTGTCGCGGCAACAGCTGGCGACATCAGGGGAGTA
GCGATAAAACCTACATCTCAGTCCATGTTTTTGAGAGTTTGACCCGCCTT
GAGAGATGATCTGCCCGGGCCTGGTGGGCTTAAAGAAAAATCTGAACGCA
TTTAGACCTTCTCGACATCCCCCAGTCAGGGGGGAAAATGTCAAAACGTG
GTTATCACCATCGCACTTGGATATGTCTTCAAAACTTCCTGGTAAAAAAT
TACAAAGTTTGAAAATGACCGTCACCCCAAACGTAACTGTTTACCATACA
AACGTTGCAAAAAGTTATCAGAACGACCCTATTTTTCATCTGTCATAAGG
GAGTACAAACATCAGTACCACTTCGAGTACAAGCATATACGATGTACTTC
CGGAAGTCCAGAAGCTGCTCTCCCCAGACAGCGCACTTCCAGAACATCGA
CGTGCCAGATACTATACGTACGGGTACGGTACTGCTGTTCGAGTCTTATG
GACCTTATACCATTACCGTGCATTTTTGGGTCCACCACCATAGCCTTGAA
TACGTTGTAGCCACTCGATACCGACGTGGCGCGAAATCCCCCAAATTTTC
AATTTTCAAATTTTCACCGCGACTAGAGAGCTCTAGAGTAGGCTCAAATG
GGAATAGTCTAATGGTGTGGAGCTCTAGAGATTTAGACCTTAAAAAGATT
TGTGATTGTTTCAAGAGCTAGAGCCATTTCGAAATTTCCAACGCGTACCC
TTATCTAACCTTATACAATTGATGTTGATAGTTTCGCTGCCTCGCCTTGC
CCCTTCCGCTGTATAAGTAATAAATACTGTACAGTACAGCTCACGAATGC
CAACGAATACCTTGCTACAAACAGTACCTGGTATGTTCGTACTTGGTACT
GCAGTATTAATAGGTACTCTGAAAACTTTTGATCGATGTTATTCGGTAAT
TTACAGCTCGTCTTTGGCTCGCTAGATTCGATGTTTTTCTCCCGTTCCTT
CGATAACCAGATCCAGGAGTATACGGTGCAAGGTCTTGCCGCAAACACCA
GGAGCTTCTGCGGGGATCAGCGTCCTTGCATTGCGTATTGAAGCAAACCA
GCTTCCCGAGAGAGACAACGGCCATGGAAGGGAAAGGGCATAGCTCCACA
GGTCCGTGGCGTGGTATCAATGTTATTTGAAGATTAATTGCACAGAAAAC
CCCAGATAATATTTTGCACAACAGATGCGTCGCCAATCGGGTGCTGGGCA
TGCCCCCCCCCAGCGATGTTTGTTCTACGGCTGATGCCTACAAATGTCAA
TGAGCTCTTGTCTCCTGCCTCTCACCCTCGCAGGTGAAATCCGGTACTTT
GATGCATTTGCCGTCGCCCTCAACGAGGCTCGGGTTTCCGAAGGAGGCCG
CTGGTATGTGTCAACCATCAGCCTCCAGTTAGCATCGCTTCGGCTTTGCG
TCGTTTGCCGTAACGCCAAGACGCTGCACTTTCGAGTCCAAGAGAGAACT
CCTGCCTCTTTGTATTCACCTGCCAAGGAGCGTCAAACGCGCGTTCCAAC
TCTAAGAGCTCGCCACGTTACTTGGTGTATTCCGCAGCCGCCCCGAGCGC
AAAGAACTTCGCCCTTGGAGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig807:210213..213685-

>mRNA_F-serratus_M_contig807.19473.1 ID=mRNA_F-serratus_M_contig807.19473.1|Name=mRNA_F-serratus_M_contig807.19473.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig807:210213..213685- (Fucus serratus male)
ATGGAAGGGAAAGGGCATAGCTCCACAGATGGAAGGGAAAGGGCATAGCT
CCACAGGTGAAATCCGGTACTTTGATGCATTTGCCGTCGCCCTCAACGAG
GCTCGGGTTTCCGAAGGAGGCCGCTGGTATGTGTCAACCATCAGCCTCCA
GTTAGCATCGCTTCGGCTTTGCGTCGTTTGCCGTAACGCCAAGACGCTGC
ACTTTCGAGTCCAAGAGAGAACTCCTGCCTCTTTGTATTCACCTGCCAAG
GAGCGTCAAACGCGCGTTCCAACTCTAAGAGCTCGCCACGTTACTTGGTG
TATTCCGCAGCCGCCCCGAGCGCAAAGAACTTCGCCCTTGGAGAGCGTGA
AATCCGGTACTTTGATGCATTTGCCGTCGCCCTCAACGAGGCTCGGGTTT
CCGAAGGAGGCCGCTGGTATGTGTCAACCATCAGCCTCCAGTTAGCATCG
CTTCGGCTTTGCGTCGTTTGCCGTAACGCCAAGACGCTGCACTTTCGAGT
CCAAGAGAGAACTCCTGCCTCTTTGTATTCACCTGCCAAGGAGCGTCAAA
CGCGCGTTCCAACTCTAAGAGCTCGCCACGTTACTTGGTGTATTCCGCAG
CCGCCCCGAGCGCAAAGAACTTCGCCCTTGGAGAGC
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