prot_F-serratus_M_contig805.19457.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig805.19457.1
Unique Nameprot_F-serratus_M_contig805.19457.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length293
Homology
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.080e-26
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0
Query:    7 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERN--RKTASSALMLTLEGFILPPTESLAVLRETDIVTVEL 98
            P    +PRRIRV+F A+ GC+P ++P L KRW+ +PP L VIGDLAHHL R L+R   RK  SS+L+LTL+GF+LPPTESL VLRETD+VT+ L
Sbjct:   61 PAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTL 154          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: B8BP67_ORYSI (Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP67_ORYSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.390e-7
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 0
Query:    6 QPQQLPTPR----RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTRDTQ 106
            QP  + TP     R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+ V+  A  R TQ
Sbjct:  129 QPPPMATPPAQAVRLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 233          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A8I6X8P6_HORVV (Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8P6_HORVV)

HSP 1 Score: 63.2 bits (152), Expect = 1.790e-7
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 0
Query:    4 SSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVE 97
            ++ P+  P+P R+R++F  +T  +     DL + WV++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+
Sbjct:    2 ATPPEPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWVLLRPELATVADLSAHVATRFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVK 93          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A452ZID7_AEGTS (Coilin n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZID7_AEGTS)

HSP 1 Score: 62.0 bits (149), Expect = 2.260e-7
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:    4 SSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR 103
            ++ P   P+P R+R++F  +T  +     DL + W+++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+  A  R
Sbjct:   28 ATPPAXXPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVQQKACKR 125          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A0E0RG41_ORYRU (Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_ORYRU)

HSP 1 Score: 62.0 bits (149), Expect = 4.230e-7
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 0
Query:   15 RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTRDTQ 106
            R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+ V+  A  R TQ
Sbjct:   10 RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDIIRVKQKASKRITQ 101          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A3B5ZYF5_WHEAT (Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A3B5ZYF5_WHEAT)

HSP 1 Score: 61.6 bits (148), Expect = 5.700e-7
Identity = 34/100 (34.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:    4 SSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR 103
            ++ P   P+P R+R++F  +T  +     DL + W+++ PELA + DL+ H+A     +R +    ++LT++GF LPP ES  + R+ DI+ V+  A  R
Sbjct:    2 ATPPAPSPSPVRLRLVFD-KTRLLRRAQRDLRRCWLLLRPELATVADLSAHVAARFRLHR-SCPGGVVLTMDGFALPPFESTCIFRDKDIIRVQQKACKR 99          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: UPI0019D6AB8C (coilin-like isoform X1 n=3 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AB8C)

HSP 1 Score: 61.2 bits (147), Expect = 7.600e-7
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 0
Query:    7 PQQLPTPRRIRVIFSAETGCIPLTSPD--LVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVE-----LLAQTRDTQSCRDGEI 113
            P   P P R+R++F      +  T  D  L + W+++ PELA + DLA H+A    R R+  SS ++L+++GF LPP ES  + R+ DI+ V+      L    D  S +D E+
Sbjct:    5 PPDAPAPVRLRLVFE-NRRLLRRTERDEGLRRCWLLLRPELATVADLASHVAARF-RLRRFCSSGIILSMDGFALPPFESTCIFRDNDIIRVKPKSCKKLVGHNDVHSIQDPEV 116          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-6
Identity = 29/81 (35.80%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   15 RIRVIFSAETGCI-PLTSPDLVKRWVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIV 94
            R+R++F  +      L    L + W+++PPEL+ + DLA H+A    R R++  S ++L+++GF+LPP ES  + R+ DI+
Sbjct:   10 RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARF-RLRRSCPSCVILSIDGFVLPPFESTCIFRDNDII 89          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A3L6G677_MAIZE (Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G677_MAIZE)

HSP 1 Score: 57.8 bits (138), Expect = 3.940e-6
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 0
Query:    7 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKR-WVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR-----DTQSCRDGEI 113
            P   P P R+R+IF        +   + ++R W+++ PELA + +LA H+A    R R+T    ++L+++GF LPP ES  + R+ DI+ V+  + T+     D    +D EI
Sbjct:    5 PPAAPAPVRLRLIFENSRLLRRVQRDEGLRRCWLLLSPELATVANLAAHVAARF-RLRRTCPRGVVLSMDGFTLPPFESTCIFRDNDIIRVKQKSCTKHIEHNDVHCIQDHEI 116          
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Match: A0A811QXN9_9POAL (Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QXN9_9POAL)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-6
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 0
Query:    7 PQQLPTPRRIRVIFSAETGCIPLTSPDLVKR-WVVVPPELAVIGDLAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLAQTR-----DTQSCRDGEI 113
            P  +P P R+R++F        +   + ++R W+++ PELA + DLA H+A    R R+T    ++L+++GF LPP ES  + R+ DI+ V+  + T+     D    +D EI
Sbjct:    5 PPAVPAPVRLRLLFENSRLLRRVQRDEGLRRCWLLLSPELATVADLAAHVAARF-RLRRTCPWGVVLSMDGFTLPPFESTCIFRDNDIIRVKQKSCTKQVGHNDVHCIQDHEI 116          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig805.19457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE1.080e-2661.70Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
B8BP67_ORYSI1.390e-735.85Coilin n=3 Tax=Oryza sativa TaxID=4530 RepID=B8BP6... [more]
A0A8I6X8P6_HORVV1.790e-735.11Coilin n=2 Tax=Hordeum vulgare subsp. vulgare TaxI... [more]
A0A452ZID7_AEGTS2.260e-734.00Coilin n=1 Tax=Aegilops tauschii subsp. strangulat... [more]
A0A0E0RG41_ORYRU4.230e-736.56Coilin n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RG41_O... [more]
A0A3B5ZYF5_WHEAT5.700e-734.00Coilin n=23 Tax=Triticinae TaxID=1648030 RepID=A0A... [more]
UPI0019D6AB8C7.600e-735.09coilin-like isoform X1 n=3 Tax=Panicum virgatum Ta... [more]
A0A0P0Y9A7_ORYSJ1.210e-635.80Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
A0A3L6G677_MAIZE3.940e-632.74Coilin n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6G67... [more]
A0A811QXN9_9POAL4.650e-632.74Coilin n=1 Tax=Miscanthus lutarioriparius TaxID=42... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 15..175
e-value: 4.4E-14
score: 52.5
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 15..287
NoneNo IPR availablePANTHERPTHR15197:SF0COILINcoord: 15..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig805contigF-serratus_M_contig805:298558..299436 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig805.19457.1mRNA_F-serratus_M_contig805.19457.1Fucus serratus malemRNAF-serratus_M_contig805 298528..299436 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig805.19457.1 ID=prot_F-serratus_M_contig805.19457.1|Name=mRNA_F-serratus_M_contig805.19457.1|organism=Fucus serratus male|type=polypeptide|length=293bp
MSTSSQPQQLPTPRRIRVIFSAETGCIPLTSPDLVKRWVVVPPELAVIGD
LAHHLARLLERNRKTASSALMLTLEGFILPPTESLAVLRETDIVTVELLA
QTRDTQSCRDGEIGGRSSSRPLDSGINTTSCLAKKRLGRRLQEQPSGPEE
VDSDAAQSEKVKGKKRPNTRSTKSREKVRLVGARATAPTKAPKGGSTKRR
KIDASSPPGGKGQAVAKRGKMKATFASSTKSKAKKTRASSSAAAVKQRSR
SRSSVHRDADGTSGGGVGAHRGSSRAIPASTTAQKKKPEEGKA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N
IPR024822Coilin