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Homology
BLAST of mRNA_F-serratus_M_contig805.19459.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI) HSP 1 Score: 144 bits (362), Expect = 4.240e-33 Identity = 107/225 (47.56%), Postives = 123/225 (54.67%), Query Frame = 2
Query: 17 RQSWGGPLGRIVGQLQLGLSGTASTRSAGG-------------NGAGNSMKGVNGRGGVFGPGGGIGRGGMGMASAFGHPDGPVGYG----RRHSTGGAAARNGXXXXXXXXXXXXXXXXTGGRSARKRGRGDWKKSYDVIASVDKKG------TGDSGEGEDGDSKYASFREFPIDMRPQPGDVLAFKTLSLNEEKWTPELSAYREATVVAFDPATDRVALSPS 622
+Q WGGPLGRIVGQL+ G + + G G G+S RGGVFGPG GIGRGGMGM G G GY RRHSTG A NG G SA+KRGRG WKK Y+VIASV+ K +G E+GD++Y + E P DMRPQ DVLAFKTLSLNEE WTPELS YR A V AFD ++ V L P+
Sbjct: 35 QQHWGGPLGRIVGQLRR-PEGESESNGGGAAAAIAPLEPEGRAGGRGDSTA----RGGVFGPGRGIGRGGMGMTRGGGAAGG--GYANKNTRRHSTGDTA--NGD-----------------GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPA 233
BLAST of mRNA_F-serratus_M_contig805.19459.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE) HSP 1 Score: 134 bits (336), Expect = 6.270e-29 Identity = 181/484 (37.40%), Postives = 215/484 (44.42%), Query Frame = 2
Query: 17 RQSWGGPLGRIVGQLQLGLSGTASTRSAGGNGAGNSMKGVNGR----------GGVFGPGGGIGRGGMGMASAFGHPDGPVG--YGRRHSTGGAAARNGXXXXXXXXXXXXXXXXTGGRSARKRGRGDWKKSYDVIASVDKKG------TGDSGEGEDGDSKYASFREFPIDMRPQPGDVLAFKTLSLNEEKWTPELSAYREATVVAFDPATDRVALSPSVEPAAKVDVDKQPEREERNPTEIAPQETAEPAAEPASDAHDNTPAAGGKSGESSGQSLSSGNTRAMDVGQMAGGDDESEKKEQAPAETGSVEGESALVDGEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGFAVQGTIDQSSFTGADGRAAAPPAGGGERSRGEGETDNSGVDGVDGGLENKEGVEWIEYSTLSNVRLIRGPSVRELEKRKDAVIRWNSLEPAG 1414
+Q WGGPLGRIVGQL+ S + GG A + GR GGVFGPG GMGM G G RRHSTG A NG G SA+KRGRG WKK Y+VIASV+ K +G E+ D++Y + E P DMRPQ DVLAFKTLSLNEE WTPELS YR A V+AFD ++ V L P AS DN G SG + + T+ VGQ G AE+ + EG +G E XXXXXXXXXXXXXXXXXXXXXXXXXXX G + + T D GR A GE V G + E +EG E +EYS+L+NVR++RGPS+ EL+KRK A+ +WNSL P G
Sbjct: 496 QQHWGGPLGRIVGQLRRPEG--ESESNGGGAAAATAPLEPEGRAGXXXXXXXVGGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTGHTA--NGD-----------------GGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRP------------------------------------ASTEDDNKDGGGAGSG-----AFVNDCTKGHTVGQQQQG------SSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXA---------------------GVSAEPTTD--------GRNKARSTSSGE------------VGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGG 870
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1870 |
| Cds size | 1581 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932402.9794445-UTR-F-serratus_M_contig805:300269..300393 | 1622932402.9794445-UTR-F-serratus_M_contig805:300269..300393 | Fucus serratus male | UTR | F-serratus_M_contig805 300270..300393 + |
| 1690964291.5104494-UTR-F-serratus_M_contig805:300269..300393 | 1690964291.5104494-UTR-F-serratus_M_contig805:300269..300393 | Fucus serratus male | UTR | F-serratus_M_contig805 300270..300393 + |
| 1622932403.1016192-UTR-F-serratus_M_contig805:303074..303239 | 1622932403.1016192-UTR-F-serratus_M_contig805:303074..303239 | Fucus serratus male | UTR | F-serratus_M_contig805 303075..303239 + |
| 1690964291.5474255-UTR-F-serratus_M_contig805:303074..303239 | 1690964291.5474255-UTR-F-serratus_M_contig805:303074..303239 | Fucus serratus male | UTR | F-serratus_M_contig805 303075..303239 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932403.000709-CDS-F-serratus_M_contig805:300393..300716 | 1622932403.000709-CDS-F-serratus_M_contig805:300393..300716 | Fucus serratus male | CDS | F-serratus_M_contig805 300394..300716 + |
| 1690964291.5215786-CDS-F-serratus_M_contig805:300393..300716 | 1690964291.5215786-CDS-F-serratus_M_contig805:300393..300716 | Fucus serratus male | CDS | F-serratus_M_contig805 300394..300716 + |
| 1622932403.0159435-CDS-F-serratus_M_contig805:300967..301094 | 1622932403.0159435-CDS-F-serratus_M_contig805:300967..301094 | Fucus serratus male | CDS | F-serratus_M_contig805 300968..301094 + |
| 1690964291.5298355-CDS-F-serratus_M_contig805:300967..301094 | 1690964291.5298355-CDS-F-serratus_M_contig805:300967..301094 | Fucus serratus male | CDS | F-serratus_M_contig805 300968..301094 + |
| 1622932403.063926-CDS-F-serratus_M_contig805:301943..303074 | 1622932403.063926-CDS-F-serratus_M_contig805:301943..303074 | Fucus serratus male | CDS | F-serratus_M_contig805 301944..303074 + |
| 1690964291.5387084-CDS-F-serratus_M_contig805:301943..303074 | 1690964291.5387084-CDS-F-serratus_M_contig805:301943..303074 | Fucus serratus male | CDS | F-serratus_M_contig805 301944..303074 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig805.19459.1 >prot_F-serratus_M_contig805.19459.1 ID=prot_F-serratus_M_contig805.19459.1|Name=mRNA_F-serratus_M_contig805.19459.1|organism=Fucus serratus male|type=polypeptide|length=527bp
MKGVNGRGGVFGPGGGIGRGGMGMASAFGHPDGPVGYGRRHSTGGAAARN GGGRGQAKGGGPTRRGGTGGRSARKRGRGDWKKSYDVIASVDKKGTGDSG EGEDGDSKYASFREFPIDMRPQPGDVLAFKTLSLNEEKWTPELSAYREAT VVAFDPATDRVALSPSVEPAAKVDVDKQPEREERNPTEIAPQETAEPAAE PASDAHDNTPAAGGKSGESSGQSLSSGNTRAMDVGQMAGGDDESEKKEQA PAETGSVEGESALVDGEGEDGEIKGESALANGEGEDGEVKGESALADGEG EDGEVKGESALADGEGERGEVKEESALAGGEGEGGEGFAVQGTIDQSSFT GADGRAAAPPAGGGERSRGEGETDNSGVDGVDGGLENKEGVEWIEYSTLS NVRLIRGPSVRELEKRKDAVIRWNSLEPAGHGKSDVVSAASGAETTATPL SVETPAGNGNSKGETPRGKASPSPKSGGGKWKGKGKRKSNSRGTFAVGKL ARIMAEASGKSATGGVSGTGSAPSST* back to topmRNA from alignment at F-serratus_M_contig805:300270..303239+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig805.19459.1 ID=mRNA_F-serratus_M_contig805.19459.1|Name=mRNA_F-serratus_M_contig805.19459.1|organism=Fucus serratus male|type=mRNA|length=2970bp|location=Sequence derived from alignment at F-serratus_M_contig805:300270..303239+ (Fucus serratus male) CGCCGAAGAGAGCAAACGACAGAGCTGGGGCGGACCACTTGGGCGAATCG
TTGGCCAACTCCAACTGGGGTTATCGGGGACGGCGTCGACTCGGTCGGCA
GGGGGAAACGGCGCGGGAAACAGCATGAAGGGAGTGAACGGAAGAGGAGG
CGTGTTTGGTCCGGGAGGGGGGATCGGGCGCGGGGGCATGGGCATGGCCA
GTGCATTTGGGCATCCTGACGGGCCTGTTGGTTACGGGCGGCGGCACAGC
ACTGGCGGCGCGGCTGCTAGGAATGGTGGTGGTCGTGGTCAGGCCAAGGG
AGGTGGTCCCACGAGACGGGGCGGTACGGGTGGGCGAAGTGCGAGGAAAC
GAGGGCGGGGAGACTGGAAGAAGAGCTACGACGTGATCGCGTCGGTGGAC
AAGAAGGGGACCGGGGATTCTGGCGAGGGAGAGGACGGCGACTCCAAGTA
AGTGTCTCTTTTTTATAGCAATTGTTACGATCGTAGTGGTTGCCTCAGCT
CAAGCCGATTACTTTTAACTTTTAGTACGAAATCAAGCCTGTCGCTTGTT
TTGTCTGAAGCATGTCTGCAGCACGTCTGCGCTGCGGCTATCGGTTCCCC
TCCGCGTGCCGTACTAAACTGCGTACAACACCCCCGGTGTTTCTCGCGAT
GCTTTTTTTCTGTGTGTGTATGGACCGTGGTAAATGACAAACTTTAAGGT
ACGCTTCTTTTCGGGAGTTCCCAATCGATATGCGTCCGCAACCGGGGGAT
GTGCTGGCGTTCAAGACGCTGTCTCTCAACGAGGAGAAGTGGACCCCCGA
GCTCTCTGCGTACAGGGAGGCAACCGTGAGTCTGGGAGGGCAGTACTGGC
GCGCGCTTTCGATGTTTGGTGTATCTATGTGGAAACCGAGATCCACGCCT
ATGGTTGGTAAGCCATTCGTATCAGGGTGTGCTCTGTAATGTGCGTTATA
TTATTAGTGAAGTTCTAGACTTAGGAGACGGATACCCTACCATAAACCTC
GACAACTAACTATGCAGCCATCTACTTATAATGTAAGCCGGTAGTCACTT
AAATATTATCCTTCTATTTTGGACGATAGTGCTTTTAGGCGACAAATCAT
GCGGCGTGGAAGACCAAAACACGTGAACGCACACGGAACCTGTAATCCTA
GTTTTTCTATAACCGCAAAGACTGAAGTAGATATAAGCCTTTAGCCACCC
AACGAAAAGGCTACCGTGTTGATTTATTCCAATAACATGCCCTGGAGGTT
TGTCTCTTCAGCCTCGTCGTTGGGGGAAATATGGACAGGGGACATTGTTT
CTTTATCCCCGGGGTTTGTGATTCCTCGTCACACACGATGGTAAGCGGCT
CGTACGGTGGCTGGAAGACCATTACGGTACACGCACGCTTCGGGCCCGCG
TTTCCTTTTCCGCTGCGAACATGTGAAAAACGTTGGTCTTCTTCTGCTCG
ATACATTTTTCTTTTTAATGATACGCGATGATCTTCCCGATACTGTACAT
GGAGCAAGAATCGCAAAACAGACCACATTTCCGAACGCTTGATGAGCCTC
CTCAATTCACTTCAGCAGCGAGCTCGCTCACCCGCGACCTCTGTCCCCAA
GACGGGCGGGAAGCTATTCATCATGACCGAACGTTCTGAGATACCCCTCA
CCCCTTTTTTGAAATATAAATCAGGTGGTGGCTTTCGACCCTGCAACCGA
CCGTGTGGCGCTCTCGCCCTCCGTAGAGCCCGCCGCGAAGGTCGACGTCG
ACAAGCAACCGGAACGCGAAGAGAGAAACCCCACCGAAATTGCGCCGCAA
GAGACAGCCGAACCAGCAGCAGAACCAGCAAGTGACGCGCACGACAACAC
TCCAGCCGCGGGCGGAAAGAGCGGAGAAAGCTCGGGCCAATCACTTTCGT
CGGGAAACACGCGCGCGATGGACGTAGGGCAGATGGCGGGGGGAGACGAT
GAGAGCGAAAAGAAGGAGCAAGCTCCGGCGGAGACGGGGTCAGTGGAGGG
AGAGAGTGCCCTGGTTGACGGGGAGGGAGAGGACGGGGAAATCAAGGGAG
AGAGTGCTCTGGCTAACGGAGAGGGAGAAGACGGTGAAGTCAAGGGAGAG
AGTGCTCTGGCTGACGGAGAGGGAGAAGACGGTGAAGTCAAGGGAGAGAG
TGCTCTGGCTGACGGAGAGGGAGAACGTGGTGAAGTCAAGGAAGAGAGTG
CTCTGGCTGGCGGAGAGGGAGAAGGCGGTGAAGGTTTTGCGGTGCAGGGA
ACGATCGATCAGAGTTCCTTTACGGGGGCCGACGGCAGAGCGGCTGCTCC
TCCTGCTGGCGGCGGCGAAAGATCTCGAGGCGAAGGGGAGACAGATAATT
CGGGGGTTGACGGCGTCGATGGTGGTCTTGAGAACAAAGAGGGTGTGGAG
TGGATCGAGTACAGCACCCTCAGCAACGTCCGCCTGATCCGAGGACCGTC
TGTCCGCGAGCTGGAGAAGCGCAAGGACGCCGTGATCAGGTGGAACTCCC
TTGAACCCGCTGGACACGGAAAGAGTGACGTGGTAAGCGCGGCTTCAGGG
GCCGAGACAACGGCGACACCTCTTTCGGTAGAAACCCCGGCGGGAAATGG
AAACTCTAAGGGTGAGACTCCGAGGGGGAAAGCCAGCCCGTCCCCGAAAA
GCGGAGGAGGAAAGTGGAAGGGAAAGGGCAAGAGAAAGAGCAATTCCCGC
GGAACCTTTGCGGTGGGCAAATTGGCGAGAATAATGGCGGAGGCAAGCGG
GAAGTCCGCAACAGGAGGCGTTTCTGGTACGGGGTCGGCACCATCGTCAA
CATGAGTCGTCTAGGAGAGCAGCGGGTGTGGGATCCTCTCTCTGCTTGAT
CCGGTTATTGGATCACACAGTCGTGCTATTGTTCCGGGGATGACGATGGC
GAAAGATGAAAAAAAAATTACCCATTTTTTTCGCGCCAGCGAGGTGGGAA
CGCTTCAATCGAATGTCGTG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig805:300270..303239+ >mRNA_F-serratus_M_contig805.19459.1 ID=mRNA_F-serratus_M_contig805.19459.1|Name=mRNA_F-serratus_M_contig805.19459.1|organism=Fucus serratus male|type=CDS|length=3162bp|location=Sequence derived from alignment at F-serratus_M_contig805:300270..303239+ (Fucus serratus male) ATGAAGGGAGTGAACGGAAGAGGAGGCGTGTTTGGTCCGGGAGGGGGGAT CGGGCGCGGGGGCATGGGCATGGCCAGTGCATTTGGGCATCCTGACGGGC CTGTTGGTTACGGGCGGCGGCACAGCACTGGCGGCGCGGCTGCTAGGAAT GGTGGTGGTCGTGGTCAGGCCAAGGGAGGTGGTCCCACGAGACGGGGCGG TACGGGTGGGCGAAGTGCGAGGAAACGAGGGCGGGGAGACTGGAAGAAGA GCTACGACGTGATCGCGTCGGTGGACAAGAAGGGGACCGGGGATTCTGGC GAGGGAGAGGACGGCGACTCCAAATGAAGGGAGTGAACGGAAGAGGAGGC GTGTTTGGTCCGGGAGGGGGGATCGGGCGCGGGGGCATGGGCATGGCCAG TGCATTTGGGCATCCTGACGGGCCTGTTGGTTACGGGCGGCGGCACAGCA CTGGCGGCGCGGCTGCTAGGAATGGTGGTGGTCGTGGTCAGGCCAAGGGA GGTGGTCCCACGAGACGGGGCGGTACGGGTGGGCGAAGTGCGAGGAAACG AGGGCGGGGAGACTGGAAGAAGAGCTACGACGTGATCGCGTCGGTGGACA AGAAGGGGACCGGGGATTCTGGCGAGGGAGAGGACGGCGACTCCAAGTAC GCTTCTTTTCGGGAGTTCCCAATCGATATGCGTCCGCAACCGGGGGATGT GCTGGCGTTCAAGACGCTGTCTCTCAACGAGGAGAAGTGGACCCCCGAGC TCTCTGCGTACAGGGAGGCAACCGTACGCTTCTTTTCGGGAGTTCCCAAT CGATATGCGTCCGCAACCGGGGGATGTGCTGGCGTTCAAGACGCTGTCTC TCAACGAGGAGAAGTGGACCCCCGAGCTCTCTGCGTACAGGGAGGCAACC GTGGTGGCTTTCGACCCTGCAACCGACCGTGTGGCGCTCTCGCCCTCCGT AGAGCCCGCCGCGAAGGTCGACGTCGACAAGCAACCGGAACGCGAAGAGA GAAACCCCACCGAAATTGCGCCGCAAGAGACAGCCGAACCAGCAGCAGAA CCAGCAAGTGACGCGCACGACAACACTCCAGCCGCGGGCGGAAAGAGCGG AGAAAGCTCGGGCCAATCACTTTCGTCGGGAAACACGCGCGCGATGGACG TAGGGCAGATGGCGGGGGGAGACGATGAGAGCGAAAAGAAGGAGCAAGCT CCGGCGGAGACGGGGTCAGTGGAGGGAGAGAGTGCCCTGGTTGACGGGGA GGGAGAGGACGGGGAAATCAAGGGAGAGAGTGCTCTGGCTAACGGAGAGG GAGAAGACGGTGAAGTCAAGGGAGAGAGTGCTCTGGCTGACGGAGAGGGA GAAGACGGTGAAGTCAAGGGAGAGAGTGCTCTGGCTGACGGAGAGGGAGA ACGTGGTGAAGTCAAGGAAGAGAGTGCTCTGGCTGGCGGAGAGGGAGAAG GCGGTGAAGGTTTTGCGGTGCAGGGAACGATCGATCAGAGTTCCTTTACG GGGGCCGACGGCAGAGCGGCTGCTCCTCCTGCTGGCGGCGGCGAAAGATC TCGAGGCGAAGGGGAGACAGATAATTCGGGGGTTGACGGCGTCGATGGTG GTCTTGAGAACAAAGAGGGTGTGGAGTGGATCGAGTACAGCACCCTCAGC AACGTCCGCCTGATCCGAGGACCGTCTGTCCGCGAGCTGGAGAAGCGCAA GGACGCCGTGATCAGGTGGAACTCCCTTGAACCCGCTGGACACGGAAAGA GTGACGTGGTAAGCGCGGCTTCAGGGGCCGAGACAACGGCGACACCTCTT TCGGTAGAAACCCCGGCGGGAAATGGAAACTCTAAGGGTGAGACTCCGAG GGGGAAAGCCAGCCCGTCCCCGAAAAGCGGAGGAGGAAAGTGGAAGGGAA AGGGCAAGAGAAAGAGCAATTCCCGCGGAACCTTTGCGGTGGGCAAATTG GCGAGAATAATGGCGGAGGCAAGCGGGAAGTCCGCAACAGGAGGCGTTTC TGGTACGGGGTCGGCACCATCGTCAACATGAGTGGTGGCTTTCGACCCTG CAACCGACCGTGTGGCGCTCTCGCCCTCCGTAGAGCCCGCCGCGAAGGTC GACGTCGACAAGCAACCGGAACGCGAAGAGAGAAACCCCACCGAAATTGC GCCGCAAGAGACAGCCGAACCAGCAGCAGAACCAGCAAGTGACGCGCACG ACAACACTCCAGCCGCGGGCGGAAAGAGCGGAGAAAGCTCGGGCCAATCA CTTTCGTCGGGAAACACGCGCGCGATGGACGTAGGGCAGATGGCGGGGGG AGACGATGAGAGCGAAAAGAAGGAGCAAGCTCCGGCGGAGACGGGGTCAG TGGAGGGAGAGAGTGCCCTGGTTGACGGGGAGGGAGAGGACGGGGAAATC AAGGGAGAGAGTGCTCTGGCTAACGGAGAGGGAGAAGACGGTGAAGTCAA GGGAGAGAGTGCTCTGGCTGACGGAGAGGGAGAAGACGGTGAAGTCAAGG GAGAGAGTGCTCTGGCTGACGGAGAGGGAGAACGTGGTGAAGTCAAGGAA GAGAGTGCTCTGGCTGGCGGAGAGGGAGAAGGCGGTGAAGGTTTTGCGGT GCAGGGAACGATCGATCAGAGTTCCTTTACGGGGGCCGACGGCAGAGCGG CTGCTCCTCCTGCTGGCGGCGGCGAAAGATCTCGAGGCGAAGGGGAGACA GATAATTCGGGGGTTGACGGCGTCGATGGTGGTCTTGAGAACAAAGAGGG TGTGGAGTGGATCGAGTACAGCACCCTCAGCAACGTCCGCCTGATCCGAG GACCGTCTGTCCGCGAGCTGGAGAAGCGCAAGGACGCCGTGATCAGGTGG AACTCCCTTGAACCCGCTGGACACGGAAAGAGTGACGTGGTAAGCGCGGC TTCAGGGGCCGAGACAACGGCGACACCTCTTTCGGTAGAAACCCCGGCGG GAAATGGAAACTCTAAGGGTGAGACTCCGAGGGGGAAAGCCAGCCCGTCC CCGAAAAGCGGAGGAGGAAAGTGGAAGGGAAAGGGCAAGAGAAAGAGCAA TTCCCGCGGAACCTTTGCGGTGGGCAAATTGGCGAGAATAATGGCGGAGG CAAGCGGGAAGTCCGCAACAGGAGGCGTTTCTGGTACGGGGTCGGCACCA TCGTCAACATGA back to top
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