mRNA_F-serratus_M_contig805.19449.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig805.19449.1
Unique NamemRNA_F-serratus_M_contig805.19449.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig805.19449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig805contigF-serratus_M_contig805:17227..18621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig805.19449.1prot_F-serratus_M_contig805.19449.1Fucus serratus malepolypeptideF-serratus_M_contig805 17349..18621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.7739692-UTR-F-serratus_M_contig805:17226..173481622932402.7739692-UTR-F-serratus_M_contig805:17226..17348Fucus serratus maleUTRF-serratus_M_contig805 17227..17348 +
1690964291.4405365-UTR-F-serratus_M_contig805:17226..173481690964291.4405365-UTR-F-serratus_M_contig805:17226..17348Fucus serratus maleUTRF-serratus_M_contig805 17227..17348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.7915094-CDS-F-serratus_M_contig805:17348..174831622932402.7915094-CDS-F-serratus_M_contig805:17348..17483Fucus serratus maleCDSF-serratus_M_contig805 17349..17483 +
1690964291.453335-CDS-F-serratus_M_contig805:17348..174831690964291.453335-CDS-F-serratus_M_contig805:17348..17483Fucus serratus maleCDSF-serratus_M_contig805 17349..17483 +
1622932402.8130546-CDS-F-serratus_M_contig805:18513..186211622932402.8130546-CDS-F-serratus_M_contig805:18513..18621Fucus serratus maleCDSF-serratus_M_contig805 18514..18621 +
1690964291.4636037-CDS-F-serratus_M_contig805:18513..186211690964291.4636037-CDS-F-serratus_M_contig805:18513..18621Fucus serratus maleCDSF-serratus_M_contig805 18514..18621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig805.19449.1

>prot_F-serratus_M_contig805.19449.1 ID=prot_F-serratus_M_contig805.19449.1|Name=mRNA_F-serratus_M_contig805.19449.1|organism=Fucus serratus male|type=polypeptide|length=81bp
MSRNKAPQTNRTFSKATRVFKSARNIREADGDPDETQQHEDDEREKPSSS
SSSLFSGQEEEGLRIAFQIHADEDENAVHRG
back to top

mRNA from alignment at F-serratus_M_contig805:17227..18621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig805.19449.1 ID=mRNA_F-serratus_M_contig805.19449.1|Name=mRNA_F-serratus_M_contig805.19449.1|organism=Fucus serratus male|type=mRNA|length=1395bp|location=Sequence derived from alignment at F-serratus_M_contig805:17227..18621+ (Fucus serratus male)
TCGTTCCAACTACACCAGGACTTGTCAATCGAATCTTACCTGCTGTGGTA
CCGAGTTCTGAACGTCATCATCAAACTCATCACGTAGTACGACATAGTTG
ATACAGTGAGCTTGTCGCTAATATGAGCCGAAACAAGGCACCCCAGACGA
ACCGAACGTTCTCGAAAGCGACTCGAGTGTTCAAGTCCGCTCGTAACATT
CGCGAGGCTGATGGCGATCCCGACGAAACACAGCAGCATGAGGACGACGA
GCGGGAGGTACTTGTTGTGTATGCTTGCCATCGAAGTAGAGTACCTAGGT
GAACGTACTAGTATGTGCCTACTGTACGTAATAGATGTTTCTGAGTTTCT
TCGGGCGATGTTGATCCGGAAAAAAACTTGTGTTTTACATGTAGTTACTA
TTACGCTATTTTTAAGACGTGCCGTATCTACTACAGGAACTGCCGTAGCT
ACAGTAGTATATACCGTAGTGTACAGTGAGTTTGAATTGTTCCATGAAGC
GGATGTTATATACAGTATGCACCGCATACAAAAACAACCTCGTCCGAAGT
GCACGTATTGTAGACAATGCCTTGTTAGGATATTATTCATATTATGTTAA
GTACTACGTATGGTTGAACAATGCCGGAAGTAGGGGCCACATCATTCTCT
GGAATATAATATTTATATTCATTCAATATACCGTACAAGTAAATAAATAA
ATGAATGAACATCGCCGCGGAACTCGGTAGGAATCCCGTAAGTAAGCACC
AGATTCAGTCTGAGTATGGAGGTGACTGCCGAACCCGTCTCGTGAGACCA
AATTCTCAAGCGCGAACGGGCGCAGGGAAATCTTCATTTTCCCTGTTCAG
CTGACCACGTGCAGGATTTTCAGCCTTACCCGGTTGATCCATACTCCTGC
TATACTCGTGACTATACATACGTACAATAGTACAGGGTACATGATACTAT
CGCATTTTATTATTAGTTGCATCATCTATATGATAAAGTCATAAGGGCTA
GATACAGGAGATAAAGTATATAAACGTGCAATCGCAGTTGTTGTTGGTGG
GTTGTTGTATTAGTTGCTATCACTATCCGTCCTGACTGGCGCAGTAAGCC
CACGGCTGACTCACCGGAGGCCCAACTCCGATTTTCTGCCCTTGTGTGAT
AGACGATGTAGATGCGGAGGAATTGCATATTATTACAACAGTGTATACCT
GGTATACGGTCTTAGAGCCAATACTAACTATACACTGCACGACTACTTAC
AGTACTGCTGTGCTTATTAATGTTGTAATTGCCGTAGAAACCGTCATCGT
CGTCGTCATCTTTGTTCAGCGGCCAAGAGGAGGAGGGTCTGAGGATAGCC
TTCCAAATCCATGCCGACGAGGACGAAAATGCTGTGCATCGGGGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig805:17227..18621+

>mRNA_F-serratus_M_contig805.19449.1 ID=mRNA_F-serratus_M_contig805.19449.1|Name=mRNA_F-serratus_M_contig805.19449.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig805:17227..18621+ (Fucus serratus male)
ATGAGCCGAAACAAGGCACCCCAGACGAACCGAACGTTCTCGAAAGCGAC
TCGAGTGTTCAAGTCCGCTCGTAACATTCGCGAGGCTGATGGCGATCCCG
ACGAAACACAGCAGCATGAGGACGACGAGCGGGAGATGAGCCGAAACAAG
GCACCCCAGACGAACCGAACGTTCTCGAAAGCGACTCGAGTGTTCAAGTC
CGCTCGTAACATTCGCGAGGCTGATGGCGATCCCGACGAAACACAGCAGC
ATGAGGACGACGAGCGGGAGAAACCGTCATCGTCGTCGTCATCTTTGTTC
AGCGGCCAAGAGGAGGAGGGTCTGAGGATAGCCTTCCAAATCCATGCCGA
CGAGGACGAAAATGCTGTGCATCGGGGAAAACCGTCATCGTCGTCGTCAT
CTTTGTTCAGCGGCCAAGAGGAGGAGGGTCTGAGGATAGCCTTCCAAATC
CATGCCGACGAGGACGAAAATGCTGTGCATCGGGGA
back to top