mRNA_F-serratus_M_contig8049.19448.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig8049.19448.1
Unique Name	mRNA_F-serratus_M_contig8049.19448.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.980e-25
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKT 369
            GE +WY GCA ERD + G    SQ+A+I  ++ R+G+   ++ PA  +ADLGP+RDDEP  DKPVR  +G L+W +     DIA A+  V R AH P  R  +A  +I++YLN T
Sbjct: 1515 GECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNAT 1629

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.640e-25
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 1

Query:    1 MIVCLLDEFQTTG-GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-------------------------DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            ++  L  +F T   GE  W+ GCA ERD   G LR SQ A+I+S+V R+ V + S +PA+   DLGP+R+DE     PVRA +GS++W+S                         D++ AVR V R AH PA+RH  A +KI+ YL  T+
Sbjct:   29 LLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATHGTDLGPKREDEEGGGWPVRAAIGSMMWVSTXXXXXXXXXXXXXXXMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 178

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.010e-24
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKT 369
            GE +WY GCA ERD + G    SQ+A+I  ++ R+G+   ++ PA  +A+LGP+RDDEP  DKPVR  +G L+W +     DIA A+  V R AH P  R  +A  +I++YLN T
Sbjct:  962 GECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNAT 1076

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.750e-24
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+IES++ R+ V  ++ +PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   A  +I++YLN TK
Sbjct:  159 GECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTK 273

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5K8K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.930e-24
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWL----SDIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            GE +WY G   E D + G+ + SQ A+IES++ R+ V   +  PA   ADLGP+RDDEP  DKPVR  +G L+W+     DIA  +  +++ AH P +R  +A  ++++YLN TK
Sbjct: 1025 GECTWYDGIGIEMDLENGITKLSQTAYIESIIKRFNVTTTAPTPAVPGADLGPKRDDEPTVDKPVREALGCLMWVVHKRPDIALPLSKILKVAHSPTDRIWQALLRVMSYLNATK 1139

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.110e-23
Identity = 53/129 (41.09%), Postives = 80/129 (62.02%), Query Frame = 1

Query:    1 MIVCLLDEFQTTG-GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKT 369
            ++  L D   T   GE+ ++LGCAF RDR+ G +  SQ ++I SV+ R+ V   S++PAS + D     +DE   D P R  VGSL+W++     DI+NA+R VVR +H+P + H +A +KI+ YL +T
Sbjct:   29 VVAALADSLPTKNLGEVRFFLGCAFVRDREAGTIEISQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLET 157

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.140e-23
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWL----SDIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            G+ +WY GCA E D + G  + SQ A+IES+++R+ V   +  PA    DLGP+RDDE   DKPVR T+G L+WL     DIA  +  + + AH P ER   A  +I++YLN+TK
Sbjct:  130 GDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVRETIGCLMWLLFMRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETK 244

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.620e-23
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+I+S++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   A  +I++YLN TK
Sbjct:   90 GECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTK 204

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BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.650e-23
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 1

Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+IES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   A  +I++YLN TK
Sbjct:   90 GECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLSKLQKIAHLPTGRKWNALVRIMSYLNFTK 204

[Close]

BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.660e-23
Identity = 54/130 (41.54%), Postives = 81/130 (62.31%), Query Frame = 1

Query:    1 MIVCLLDEFQTTG--GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RAFRKIIAYLNKT 369
            ++V  L +F  T   GE+ ++LGCAF RDR+ G +  SQ ++I SV+ R+ V   S++PAS + D     +DE   D P R  VGSL+W++     DI+NAVR V R +H+P + H +A +KI+ YL +T
Sbjct:  193 VVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLET 322

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig8049.19448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L175_9PHAE	2.980e-25	46.09	Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB85_9PHAE	3.640e-25	39.33	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JKS3_9PHAE	1.010e-24	45.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXU1_9PHAE	5.750e-24	44.35	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K8K4_9PHAE	8.930e-24	42.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBM6_9PHAE	1.110e-23	41.09	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KCN6_9PHAE	1.140e-23	45.22	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KW89_9PHAE	1.620e-23	43.48	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JE75_9PHAE	1.650e-23	44.35	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JQD0_9PHAE	2.660e-23	41.54	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig8049	contig	F-serratus_M_contig8049:2141..2529 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	374
Cds size	330
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig8049.19448.1	prot_F-serratus_M_contig8049.19448.1	Fucus serratus male	polypeptide	F-serratus_M_contig8049 2185..2529 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932402.681608-UTR-F-serratus_M_contig8049:2140..2184	1622932402.681608-UTR-F-serratus_M_contig8049:2140..2184	Fucus serratus male	UTR	F-serratus_M_contig8049 2141..2184 -
1690964291.408793-UTR-F-serratus_M_contig8049:2140..2184	1690964291.408793-UTR-F-serratus_M_contig8049:2140..2184	Fucus serratus male	UTR	F-serratus_M_contig8049 2141..2184 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932402.6995115-CDS-F-serratus_M_contig8049:2184..2246	1622932402.6995115-CDS-F-serratus_M_contig8049:2184..2246	Fucus serratus male	CDS	F-serratus_M_contig8049 2185..2246 -
1690964291.4190812-CDS-F-serratus_M_contig8049:2184..2246	1690964291.4190812-CDS-F-serratus_M_contig8049:2184..2246	Fucus serratus male	CDS	F-serratus_M_contig8049 2185..2246 -
1622932402.7158592-CDS-F-serratus_M_contig8049:2261..2529	1622932402.7158592-CDS-F-serratus_M_contig8049:2261..2529	Fucus serratus male	CDS	F-serratus_M_contig8049 2262..2529 -
1690964291.4292502-CDS-F-serratus_M_contig8049:2261..2529	1690964291.4292502-CDS-F-serratus_M_contig8049:2261..2529	Fucus serratus male	CDS	F-serratus_M_contig8049 2262..2529 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig8049:2141..2529-
coding sequence from alignment at F-serratus_M_contig8049:2141..2529-

protein sequence of mRNA_F-serratus_M_contig8049.19448.1

>prot_F-serratus_M_contig8049.19448.1 ID=prot_F-serratus_M_contig8049.19448.1|Name=mRNA_F-serratus_M_contig8049.19448.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MIVCLLDEFQTTGGELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGV
DAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLSDIANAVRTVVR
QAHDPAERH*

mRNA from alignment at F-serratus_M_contig8049:2141..2529-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig8049.19448.1 ID=mRNA_F-serratus_M_contig8049.19448.1|Name=mRNA_F-serratus_M_contig8049.19448.1|organism=Fucus serratus male|type=mRNA|length=389bp|location=Sequence derived from alignment at F-serratus_M_contig8049:2141..2529- (Fucus serratus male)
ATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAGGAAAGGAGGCGTTCTTC
GCACATCGCAGAGAGCGTTTATCGAGTCTGTTGTCAGCCGCTATGGAGTT
GACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAG
GAGGGACGACGAGCCGGTCTATGATAAACCGGTTCGGGCGACTGTTGGTA
GTTTGATTTGGTTGAGTGGTATGACGCGGCCAGACATAGCCAATGCGGTT
AGGACAGTAGTACGTCAAGCCCACGATCCTGCTGAAAGGCACTGACGAGC
CTTTAGGAAAATAATCGCGTACCTGAATAAAACGAAAGA

Coding sequence (CDS) from alignment at F-serratus_M_contig8049:2141..2529-

>mRNA_F-serratus_M_contig8049.19448.1 ID=mRNA_F-serratus_M_contig8049.19448.1|Name=mRNA_F-serratus_M_contig8049.19448.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig8049:2141..2529- (Fucus serratus male)
ATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAGGAAAGGAGGCGTTCTTC
GCACATCGCAGAGAGCGTTTATCGAGTCTGTTGTCAGCCGCTATGGAGTT
GACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAG
GAGGGACGACGAGCCGGTCTATGATAAACCGGTTCGGGCGACTGTTGGTA
GTTTGATTTGGTTGAGTGATGATTGTTTGTCTTCTTGACGAGTTCCAGAC
TACGGGAGGGGAACTCTCGTGGTACCTAGGGTGCGCGTTTGAGCGTGATA
GGAAAGGAGGCGTTCTTCGCACATCGCAGAGAGCGTTTATCGAGTCTGTT
GTCAGCCGCTATGGAGTTGACGCAGTGTCTAATCTCCCGGCTTCTCAATC
GGCAGATCTCGGCCCTAGGAGGGACGACGAGCCGGTCTATGATAAACCGG
TTCGGGCGACTGTTGGTAGTTTGATTTGGTTGAGTGACATAGCCAATGCG
GTTAGGACAGTAGTACGTCAAGCCCACGATCCTGCTGAAAGGCACTGAAC
ATAGCCAATGCGGTTAGGACAGTAGTACGTCAAGCCCACGATCCTGCTGA
AAGGCACTGA