mRNA_F-serratus_M_contig8043.19446.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8043.19446.1
Unique NamemRNA_F-serratus_M_contig8043.19446.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8043.19446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8043contigF-serratus_M_contig8043:2265..2532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size157
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.5284655-CDS-F-serratus_M_contig8043:2265..23421622932402.5284655-CDS-F-serratus_M_contig8043:2265..2342Fucus serratus maleCDSF-serratus_M_contig8043 2266..2342 -
1690964291.3612573-CDS-F-serratus_M_contig8043:2265..23421690964291.3612573-CDS-F-serratus_M_contig8043:2265..2342Fucus serratus maleCDSF-serratus_M_contig8043 2266..2342 -
1622932402.5623045-CDS-F-serratus_M_contig8043:2453..25321622932402.5623045-CDS-F-serratus_M_contig8043:2453..2532Fucus serratus maleCDSF-serratus_M_contig8043 2454..2532 -
1690964291.3718386-CDS-F-serratus_M_contig8043:2453..25321690964291.3718386-CDS-F-serratus_M_contig8043:2453..2532Fucus serratus maleCDSF-serratus_M_contig8043 2454..2532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8043.19446.1prot_F-serratus_M_contig8043.19446.1Fucus serratus malepolypeptideF-serratus_M_contig8043 2266..2532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8043.19446.1

>prot_F-serratus_M_contig8043.19446.1 ID=prot_F-serratus_M_contig8043.19446.1|Name=mRNA_F-serratus_M_contig8043.19446.1|organism=Fucus serratus male|type=polypeptide|length=52bp
AVERLRVHLKTGCTSDSPAISLYFEKGLGNDLLLELIYRWNLDRSISNRS
LN
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mRNA from alignment at F-serratus_M_contig8043:2265..2532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8043.19446.1 ID=mRNA_F-serratus_M_contig8043.19446.1|Name=mRNA_F-serratus_M_contig8043.19446.1|organism=Fucus serratus male|type=mRNA|length=268bp|location=Sequence derived from alignment at F-serratus_M_contig8043:2265..2532- (Fucus serratus male)
GCTGTTGAGCGACTGCGGGTCCACCTCAAAACAGGATGCACCAGCGACAG
CCCTGCAATTTCGCTCTACTTCGAAAAAGGCAAGGGTCAGCTTACGGGTG
TAACGCTCTACCGATGTGCGCGCGGCACCAATGATCTCGAGGGCTTTCAC
AAGCACATGCGTAGCCTGATCGAGTGATGCGTCGGGGCAGGTTTGGGGAA
CGATCTTCTTCTGGAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCA
GCAACAGAAGTCTCAATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8043:2265..2532-

>mRNA_F-serratus_M_contig8043.19446.1 ID=mRNA_F-serratus_M_contig8043.19446.1|Name=mRNA_F-serratus_M_contig8043.19446.1|organism=Fucus serratus male|type=CDS|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig8043:2265..2532- (Fucus serratus male)
GCTGTTGAGCGACTGCGGGTCCACCTCAAAACAGGATGCACCAGCGACAG
CCCTGCAATTTCGCTCTACTTCGAAAAAGGCTGTTGAGCGACTGCGGGTC
CACCTCAAAACAGGATGCACCAGCGACAGCCCTGCAATTTCGCTCTACTT
CGAAAAAGGTTTGGGGAACGATCTTCTTCTGGAGTTGATCTACCGCTGGA
ACCTGGACCGGAGCATCAGCAACAGAAGTCTCAATGTTTGGGGAACGATC
TTCTTCTGGAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCAGCAAC
AGAAGTCTCAAT
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