mRNA_F-serratus_M_contig8043.19445.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8043.19445.1
Unique NamemRNA_F-serratus_M_contig8043.19445.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8043.19445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8043contigF-serratus_M_contig8043:1356..1694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8043.19445.1prot_F-serratus_M_contig8043.19445.1Fucus serratus malepolypeptideF-serratus_M_contig8043 1401..1694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.449335-UTR-F-serratus_M_contig8043:1355..14001622932402.449335-UTR-F-serratus_M_contig8043:1355..1400Fucus serratus maleUTRF-serratus_M_contig8043 1356..1400 -
1690964291.3205023-UTR-F-serratus_M_contig8043:1355..14001690964291.3205023-UTR-F-serratus_M_contig8043:1355..1400Fucus serratus maleUTRF-serratus_M_contig8043 1356..1400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932402.470149-CDS-F-serratus_M_contig8043:1400..14351622932402.470149-CDS-F-serratus_M_contig8043:1400..1435Fucus serratus maleCDSF-serratus_M_contig8043 1401..1435 -
1690964291.3380034-CDS-F-serratus_M_contig8043:1400..14351690964291.3380034-CDS-F-serratus_M_contig8043:1400..1435Fucus serratus maleCDSF-serratus_M_contig8043 1401..1435 -
1622932402.482801-CDS-F-serratus_M_contig8043:1582..16941622932402.482801-CDS-F-serratus_M_contig8043:1582..1694Fucus serratus maleCDSF-serratus_M_contig8043 1583..1694 -
1690964291.3502836-CDS-F-serratus_M_contig8043:1582..16941690964291.3502836-CDS-F-serratus_M_contig8043:1582..1694Fucus serratus maleCDSF-serratus_M_contig8043 1583..1694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8043.19445.1

>prot_F-serratus_M_contig8043.19445.1 ID=prot_F-serratus_M_contig8043.19445.1|Name=mRNA_F-serratus_M_contig8043.19445.1|organism=Fucus serratus male|type=polypeptide|length=49bp
PAFTLEWNADVQQIEEGKAPFEPIYRRRSRISSRTGKRTTTTVTRGRR*
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mRNA from alignment at F-serratus_M_contig8043:1356..1694-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8043.19445.1 ID=mRNA_F-serratus_M_contig8043.19445.1|Name=mRNA_F-serratus_M_contig8043.19445.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig8043:1356..1694- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGTTTTGTCGCGTC
CTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGTGTATTGT
CAGCGGACACGTGTTTCACCTGTACTCCCTTTCGGCGGCGCTGTTATTTT
TTTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCAGAG
TGCCGAACATACTTCGCCCGCTCCGTGAACCTGGAGTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8043:1356..1694-

>mRNA_F-serratus_M_contig8043.19445.1 ID=mRNA_F-serratus_M_contig8043.19445.1|Name=mRNA_F-serratus_M_contig8043.19445.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig8043:1356..1694- (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCA
GATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGCACAACTACAACCGTAACGAGAGGG
AGACGCTGAGCACAACTACAACCGTAACGAGAGGGAGACGCTGA
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