mRNA_F-serratus_M_contig804.19434.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig804.19434.1
Unique NamemRNA_F-serratus_M_contig804.19434.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig804.19434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig804contigF-serratus_M_contig804:8986..9638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig804.19434.1prot_F-serratus_M_contig804.19434.1Fucus serratus malepolypeptideF-serratus_M_contig804 9031..9504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.5396304-UTR-F-serratus_M_contig804:8985..90301622932399.5396304-UTR-F-serratus_M_contig804:8985..9030Fucus serratus maleUTRF-serratus_M_contig804 8986..9030 +
1690964290.2408104-UTR-F-serratus_M_contig804:8985..90301690964290.2408104-UTR-F-serratus_M_contig804:8985..9030Fucus serratus maleUTRF-serratus_M_contig804 8986..9030 +
1622932399.5739894-UTR-F-serratus_M_contig804:9504..96381622932399.5739894-UTR-F-serratus_M_contig804:9504..9638Fucus serratus maleUTRF-serratus_M_contig804 9505..9638 +
1690964290.271618-UTR-F-serratus_M_contig804:9504..96381690964290.271618-UTR-F-serratus_M_contig804:9504..9638Fucus serratus maleUTRF-serratus_M_contig804 9505..9638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.5567112-CDS-F-serratus_M_contig804:9030..95041622932399.5567112-CDS-F-serratus_M_contig804:9030..9504Fucus serratus maleCDSF-serratus_M_contig804 9031..9504 +
1690964290.2576764-CDS-F-serratus_M_contig804:9030..95041690964290.2576764-CDS-F-serratus_M_contig804:9030..9504Fucus serratus maleCDSF-serratus_M_contig804 9031..9504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig804.19434.1

>prot_F-serratus_M_contig804.19434.1 ID=prot_F-serratus_M_contig804.19434.1|Name=mRNA_F-serratus_M_contig804.19434.1|organism=Fucus serratus male|type=polypeptide|length=158bp
MGLSLILTGGYKVGIPYVRMLLSTSVLQGTVPVTLRSAGDSTSICCKLTH
GLNPLHVVKPVGLTIFSRALHVIPCEVQPFLAKPCRAKCWSRAASQNTSW
RDSIPQLYNTRASQHKPNMVKTVETVEHQTTKVSSQIPAFCVRRPLSRVI
QLHPTDD*
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mRNA from alignment at F-serratus_M_contig804:8986..9638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig804.19434.1 ID=mRNA_F-serratus_M_contig804.19434.1|Name=mRNA_F-serratus_M_contig804.19434.1|organism=Fucus serratus male|type=mRNA|length=653bp|location=Sequence derived from alignment at F-serratus_M_contig804:8986..9638+ (Fucus serratus male)
CCGGTTCAGGAGAAGAGATGGCAGGCCGAATGGTAGACTCAATATATGGG
GCTATCACTCATTCTTACAGGGGGATATAAAGTTGGAATTCCCTATGTAA
GAATGCTACTCTCTACTTCTGTACTCCAAGGTACCGTTCCAGTAACCCTC
CGCAGTGCGGGTGATTCCACAAGCATATGCTGTAAGCTCACACACGGCTT
AAATCCTCTCCATGTAGTCAAGCCTGTCGGACTCACAATCTTCTCTAGAG
CATTACATGTCATTCCGTGCGAAGTGCAGCCATTTCTTGCGAAACCCTGT
CGAGCGAAATGTTGGTCACGAGCAGCATCTCAAAACACATCTTGGAGGGA
CAGCATTCCACAGTTGTATAACACTAGAGCCTCGCAGCACAAGCCAAACA
TGGTGAAAACCGTAGAAACCGTGGAACACCAAACCACGAAAGTATCGTCT
CAAATCCCTGCCTTCTGCGTGCGTCGTCCCCTCTCGCGCGTGATCCAACT
GCACCCCACAGACGACTAACTAATACGAGCTCCGCAGCTGCCTGGCAGAC
TTTTTCTTTTCTTTTTTTTCCCTGTTCAGCAGACCACGAGCGGGATTGGC
CACCGTGTAAAGTAGTTTTCTTCGGGTTGGCAACCAATGCGCTGAATGTG
AGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig804:8986..9638+

>mRNA_F-serratus_M_contig804.19434.1 ID=mRNA_F-serratus_M_contig804.19434.1|Name=mRNA_F-serratus_M_contig804.19434.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig804:8986..9638+ (Fucus serratus male)
ATGGGGCTATCACTCATTCTTACAGGGGGATATAAAGTTGGAATTCCCTA
TGTAAGAATGCTACTCTCTACTTCTGTACTCCAAGGTACCGTTCCAGTAA
CCCTCCGCAGTGCGGGTGATTCCACAAGCATATGCTGTAAGCTCACACAC
GGCTTAAATCCTCTCCATGTAGTCAAGCCTGTCGGACTCACAATCTTCTC
TAGAGCATTACATGTCATTCCGTGCGAAGTGCAGCCATTTCTTGCGAAAC
CCTGTCGAGCGAAATGTTGGTCACGAGCAGCATCTCAAAACACATCTTGG
AGGGACAGCATTCCACAGTTGTATAACACTAGAGCCTCGCAGCACAAGCC
AAACATGGTGAAAACCGTAGAAACCGTGGAACACCAAACCACGAAAGTAT
CGTCTCAAATCCCTGCCTTCTGCGTGCGTCGTCCCCTCTCGCGCGTGATC
CAACTGCACCCCACAGACGACTAAATGGGGCTATCACTCATTCTTACAGG
GGGATATAAAGTTGGAATTCCCTATGTAAGAATGCTACTCTCTACTTCTG
TACTCCAAGGTACCGTTCCAGTAACCCTCCGCAGTGCGGGTGATTCCACA
AGCATATGCTGTAAGCTCACACACGGCTTAAATCCTCTCCATGTAGTCAA
GCCTGTCGGACTCACAATCTTCTCTAGAGCATTACATGTCATTCCGTGCG
AAGTGCAGCCATTTCTTGCGAAACCCTGTCGAGCGAAATGTTGGTCACGA
GCAGCATCTCAAAACACATCTTGGAGGGACAGCATTCCACAGTTGTATAA
CACTAGAGCCTCGCAGCACAAGCCAAACATGGTGAAAACCGTAGAAACCG
TGGAACACCAAACCACGAAAGTATCGTCTCAAATCCCTGCCTTCTGCGTG
CGTCGTCCCCTCTCGCGCGTGATCCAACTGCACCCCACAGACGACTAA
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