mRNA_F-serratus_M_contig804.19444.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig804.19444.1
Unique NamemRNA_F-serratus_M_contig804.19444.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig804.19444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig804contigF-serratus_M_contig804:372150..372574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size195
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig804.19444.1prot_F-serratus_M_contig804.19444.1Fucus serratus malepolypeptideF-serratus_M_contig804 372204..372547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.4336128-UTR-F-serratus_M_contig804:372149..3722031622932399.4336128-UTR-F-serratus_M_contig804:372149..372203Fucus serratus maleUTRF-serratus_M_contig804 372150..372203 +
1690964290.1866457-UTR-F-serratus_M_contig804:372149..3722031690964290.1866457-UTR-F-serratus_M_contig804:372149..372203Fucus serratus maleUTRF-serratus_M_contig804 372150..372203 +
1622932399.484297-UTR-F-serratus_M_contig804:372547..3725741622932399.484297-UTR-F-serratus_M_contig804:372547..372574Fucus serratus maleUTRF-serratus_M_contig804 372548..372574 +
1690964290.2261534-UTR-F-serratus_M_contig804:372547..3725741690964290.2261534-UTR-F-serratus_M_contig804:372547..372574Fucus serratus maleUTRF-serratus_M_contig804 372548..372574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.4476275-CDS-F-serratus_M_contig804:372203..3722341622932399.4476275-CDS-F-serratus_M_contig804:372203..372234Fucus serratus maleCDSF-serratus_M_contig804 372204..372234 +
1690964290.2037382-CDS-F-serratus_M_contig804:372203..3722341690964290.2037382-CDS-F-serratus_M_contig804:372203..372234Fucus serratus maleCDSF-serratus_M_contig804 372204..372234 +
1622932399.4680865-CDS-F-serratus_M_contig804:372464..3725471622932399.4680865-CDS-F-serratus_M_contig804:372464..372547Fucus serratus maleCDSF-serratus_M_contig804 372465..372547 +
1690964290.2144258-CDS-F-serratus_M_contig804:372464..3725471690964290.2144258-CDS-F-serratus_M_contig804:372464..372547Fucus serratus maleCDSF-serratus_M_contig804 372465..372547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig804.19444.1

>prot_F-serratus_M_contig804.19444.1 ID=prot_F-serratus_M_contig804.19444.1|Name=mRNA_F-serratus_M_contig804.19444.1|organism=Fucus serratus male|type=polypeptide|length=38bp
MRLAQYLPSASGALAQVIKFLLLPTGNTSPYNLLNCS*
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mRNA from alignment at F-serratus_M_contig804:372150..372574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig804.19444.1 ID=mRNA_F-serratus_M_contig804.19444.1|Name=mRNA_F-serratus_M_contig804.19444.1|organism=Fucus serratus male|type=mRNA|length=425bp|location=Sequence derived from alignment at F-serratus_M_contig804:372150..372574+ (Fucus serratus male)
ACGTCATTAGACTATGGGCGCAATTATCCTATAATAGGCAACCGCCGTAT
ACGAATGCGCCTGGCGCAATATCTCCCAAGCGCGAGTGTAGTGTTGACAA
AGTAAGGATTTACTAATTTACTAATCACCTTGCCTACACGAACACCCTCC
CCGATTCGAAACATCCTTACTGATGAGTTAATCAGGGGCACTAAAAAAAA
ACAACAACGAAGGGAAACCCAGCTACTGGATAAAAACCCTCCGTTCCTTC
CTAAGTCCTTTAGGGTACCAGGTAGGCCAACGTCTACTGGTGTGGCAGAC
GCTCAATCTCGATAGGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTA
CTCCCTACAGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGCA
TCTGGGGTGGACCAACGACCCGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig804:372150..372574+

>mRNA_F-serratus_M_contig804.19444.1 ID=mRNA_F-serratus_M_contig804.19444.1|Name=mRNA_F-serratus_M_contig804.19444.1|organism=Fucus serratus male|type=CDS|length=228bp|location=Sequence derived from alignment at F-serratus_M_contig804:372150..372574+ (Fucus serratus male)
ATGCGCCTGGCGCAATATCTCCCAAGCGCGAATGCGCCTGGCGCAATATC
TCCCAAGCGCGAGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTACTC
CCTACAGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGGTGGA
GCGCTTGCTCAGGTCATAAAATTTTTGCTACTCCCTACAGGTAACACCTC
TCCCTACAACTTGCTTAATTGCAGTTAG
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