mRNA_F-serratus_M_contig802.19428.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig802.19428.1
Unique NamemRNA_F-serratus_M_contig802.19428.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig802.19428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig802contigF-serratus_M_contig802:306534..307377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size391
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig802.19428.1prot_F-serratus_M_contig802.19428.1Fucus serratus malepolypeptideF-serratus_M_contig802 306535..307377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932399.0440564-CDS-F-serratus_M_contig802:306534..3065921622932399.0440564-CDS-F-serratus_M_contig802:306534..306592Fucus serratus maleCDSF-serratus_M_contig802 306535..306592 -
1690964289.9831088-CDS-F-serratus_M_contig802:306534..3065921690964289.9831088-CDS-F-serratus_M_contig802:306534..306592Fucus serratus maleCDSF-serratus_M_contig802 306535..306592 -
1622932399.0650828-CDS-F-serratus_M_contig802:306878..3071531622932399.0650828-CDS-F-serratus_M_contig802:306878..307153Fucus serratus maleCDSF-serratus_M_contig802 306879..307153 -
1690964289.9931185-CDS-F-serratus_M_contig802:306878..3071531690964289.9931185-CDS-F-serratus_M_contig802:306878..307153Fucus serratus maleCDSF-serratus_M_contig802 306879..307153 -
1622932399.0796492-CDS-F-serratus_M_contig802:307320..3073771622932399.0796492-CDS-F-serratus_M_contig802:307320..307377Fucus serratus maleCDSF-serratus_M_contig802 307321..307377 -
1690964290.0030334-CDS-F-serratus_M_contig802:307320..3073771690964290.0030334-CDS-F-serratus_M_contig802:307320..307377Fucus serratus maleCDSF-serratus_M_contig802 307321..307377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig802.19428.1

>prot_F-serratus_M_contig802.19428.1 ID=prot_F-serratus_M_contig802.19428.1|Name=mRNA_F-serratus_M_contig802.19428.1|organism=Fucus serratus male|type=polypeptide|length=130bp
LEIADREIILAKPQAKIRAILNADASLRPYLETYEEKRAKIMDNINLSKL
QKDAPSKTGPGENDGKRKAGDDNEDDEEEEKEQEDESDGAGENDDEDRLL
CATCNPPSTSKYCCPNSNCKVVHLGSCADS
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mRNA from alignment at F-serratus_M_contig802:306534..307377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig802.19428.1 ID=mRNA_F-serratus_M_contig802.19428.1|Name=mRNA_F-serratus_M_contig802.19428.1|organism=Fucus serratus male|type=mRNA|length=844bp|location=Sequence derived from alignment at F-serratus_M_contig802:306534..307377- (Fucus serratus male)
CTCGAAATTGCCGACAGAGAGATCATCTTGGCTAAACCACAGGCGAAGAT
CCGTGCAGTGAGTCGCACGTAGTGTTATGCGTTGTAGACAGTTAGGTGCG
CTCTCGTTCCTCTGATGTTGATCGATTGGTTGACGGGCGTTTCGTGAGAG
GCAGCATGGTGCCCTTCGTTGTTCGATAATATTCCTATTTCCTTGTGAAT
TCTGCGTTGCGATGTGTTTGTGAGATTCTGAACGCAGACGCCAGCCTGCG
GCCATATCTGGAGACGTACGAGGAGAAACGTGCGAAGATCATGGACAATA
TCAACCTCAGCAAGCTGCAAAAAGACGCCCCTTCTAAAACTGGTCCTGGG
GAGAATGACGGCAAGCGCAAGGCCGGTGACGACAACGAAGACGACGAAGA
AGAAGAGAAGGAACAAGAAGACGAGAGTGACGGCGCCGGAGAAAACGACG
ACGAGGACCGGTTGCTGTGTGCTACTTGCAACCCGCCGTCAACATCCAAG
TAAGACGACCGACAACATTTCGGGGGATAAACACGAAAACAAGCGCTACC
CGGTACGCCTGCTCAACCTTTACTCCGCAACTGCCGACGTACGATGGTTA
GCCTTGTCCCTACACCCACTGTTGATGTGACTACAACCGCCGGACTACTA
CTATTAATGCTACCTCTCCCATCCCCCTTCCTTCCATCCCTATACCATCC
CAAGCACAGCGTATTTATAGGCAATTGCCAGTGTTTTCCCTCACCACTTT
TTCTTTCTGCTTACACCAACGTCGGCGACGGACAGGTACTGCTGCCCGAA
TTCAAACTGCAAGGTAGTCCATCTCGGTAGTTGTGCAGACAGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig802:306534..307377-

>mRNA_F-serratus_M_contig802.19428.1 ID=mRNA_F-serratus_M_contig802.19428.1|Name=mRNA_F-serratus_M_contig802.19428.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig802:306534..307377- (Fucus serratus male)
CTCGAAATTGCCGACAGAGAGATCATCTTGGCTAAACCACAGGCGAAGAT
CCGTGCACTCGAAATTGCCGACAGAGAGATCATCTTGGCTAAACCACAGG
CGAAGATCCGTGCAATTCTGAACGCAGACGCCAGCCTGCGGCCATATCTG
GAGACGTACGAGGAGAAACGTGCGAAGATCATGGACAATATCAACCTCAG
CAAGCTGCAAAAAGACGCCCCTTCTAAAACTGGTCCTGGGGAGAATGACG
GCAAGCGCAAGGCCGGTGACGACAACGAAGACGACGAAGAAGAAGAGAAG
GAACAAGAAGACGAGAGTGACGGCGCCGGAGAAAACGACGACGAGGACCG
GTTGCTGTGTGCTACTTGCAACCCGCCGTCAACATCCAAATTCTGAACGC
AGACGCCAGCCTGCGGCCATATCTGGAGACGTACGAGGAGAAACGTGCGA
AGATCATGGACAATATCAACCTCAGCAAGCTGCAAAAAGACGCCCCTTCT
AAAACTGGTCCTGGGGAGAATGACGGCAAGCGCAAGGCCGGTGACGACAA
CGAAGACGACGAAGAAGAAGAGAAGGAACAAGAAGACGAGAGTGACGGCG
CCGGAGAAAACGACGACGAGGACCGGTTGCTGTGTGCTACTTGCAACCCG
CCGTCAACATCCAAGTACTGCTGCCCGAATTCAAACTGCAAGGTAGTCCA
TCTCGGTAGTTGTGCAGACAGCGTACTGCTGCCCGAATTCAAACTGCAAG
GTAGTCCATCTCGGTAGTTGTGCAGACAGC
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