prot_F-serratus_M_contig802.19423.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig802.19423.1
Unique Nameprot_F-serratus_M_contig802.19423.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length661
Homology
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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A6H5JUS6_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUS6_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.030e-34
Identity = 138/274 (50.36%), Postives = 156/274 (56.93%), Query Frame = 0 
Query:  141 ESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDGGXXXXXXXXXXXXXXXXXXXFRQGGGMREDFGRRGQDSRGYEPPQGFGSGXXXGGSHRGGDGFSRRGTHEGAEPGFGSXXXXXXXXXXXXXXXXXXXXXLAGPPRPDAPQGGDNPPPTGERRRLKLQPRTKPPTEIAAV--ANP----TKKASIFGGGKAHDEIAYERAKAA 408
            E E++PVPD PP+KALVGNLPY   ++DI +FF +C V D+YLVKDR TG  KGFGYVTF  K  L  AL M Q  LGGR++RVEVAKPQRGGGNRR      XXXXXXXXXXXXXXXXXX +RQG   R+D+                                 R+    G+  G G        XX  XXXXXXXXXX                       RLKL PR+KP T  AA   A P    +KKASIFGGGKAHDE AYE+AKAA
Sbjct:   72 EYEEVPVPDAPPYKALVGNLPYSAHENDIADFFHQCRVDDVYLVKDRTTGQAKGFGYVTFGDKQSLLDALKMTQRNLGGRDVRVEVAKPQRGGGNRRXXXXX-XXXXXXXXXXXXXXXXXXGYRQGXSGRDDYXXXXXXXXXXXXXX-----------------XXRQREDRGSSGGGGQDGPIGAGXXDVXXXXXXXXXXXX--------------------XRLKLAPRSKPATGQAAAGAAXPAPASSKKASIFGGGKAHDEFAYEKAKAA 307
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A3N4KIL9_9PEZI (RNA-binding domain-containing protein n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KIL9_9PEZI)

HSP 1 Score: 99.4 bits (246), Expect = 3.160e-18
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:  143 EQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRR 237
            EQLP+PD+PPF A VGNL + + +++I EFF++C V+++ LV+D+     KGFGYV F  K+GL AA+ +   QL GRNIR+ VA P +  G  R
Sbjct:   79 EQLPIPDKPPFTAHVGNLSFDVSENEISEFFEKCDVSNVRLVRDKMEDRPKGFGYVEFNTKEGLIAAMELNGSQLSGRNIRINVADPPKDRGEER 173
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A0D1ZLH0_9EURO (RRM domain-containing protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1ZLH0_9EURO)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 0 
Query:  143 EQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            EQLP+P EPPF A + NL +     DI +FF++C VT++ +V+D+     KGFGYV F   DGL+AAL ++   L GR +RV VA+P +GG + R F D
Sbjct:   72 EQLPLPTEPPFTAHLANLSFDATQGDISDFFRDCSVTNVRIVEDKMDRKPKGFGYVEFGTLDGLKAALALSGSNLAGRQVRVSVAEPPKGGQDSRDFSD 170
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BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A3N4KGI1_9PEZI (RNA-binding domain-containing protein n=1 Tax=Morchella conica CCBAS932 TaxID=1392247 RepID=A0A3N4KGI1_9PEZI)

HSP 1 Score: 88.6 bits (218), Expect = 5.760e-16
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0 
Query:  141 ESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQR 231
            E E  P+PD PP+ A +GNL + I   +I +FF EC V  + LV+D+     KGFGYV F AK+GL AA  +  +++ GRNIRV +A+P++
Sbjct:  156 EREITPIPDNPPYTAHIGNLSFDIEVQEISDFFSECDVKTVRLVRDKPNDRPKGFGYVEFNAKEGLIAATELNGVKVCGRNIRVNIARPRK 246
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: UPI001069F6B7 (glycine-rich RNA-binding protein-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069F6B7)

HSP 1 Score: 84.0 bits (206), Expect = 1.630e-15
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 0 
Query:  152 PFKALVGNLPYRIRDDDIMEFFQECG-VTDIYLVKDRETGDMKGFGYVTFE-AKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRG----FQDGG 243
            P K  VGNLP++I  ++I E F++ G V D+ +V DR+TG  +GFG+VTFE  +D  +A  G+ + +LGGRNIRV  ++P+R GG  RG    + DGG
Sbjct:    4 PRKVHVGNLPFKISQEEIREAFEKYGAVEDVIIVSDRDTGRPRGFGFVTFENEEDAKEAINGLDETELGGRNIRVSESRPRREGGGGRGGGRSYGDGG 101
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A1V9Z2N8_9STRA (RRM domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2N8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.860e-15
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 0 
Query:  138 GAHESEQ----LPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDG 242
            G+HE EQ    LPVPD PPFK+ VGNLPY++ +DD+ +FF+   V D+++ +D +TG  KGF YV F  ++ L  AL      +  R IR++VA  ++GG +  G + G
Sbjct:   66 GSHEFEQKREKLPVPDRPPFKSYVGNLPYQMNEDDLADFFKGLNVIDVHIPQDYQTGRPKGFAYVEFGDRESLVQALTADGDLIDKRPIRIDVAGEKKGGRDTFGKRGG 174
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A139AS84_GONPJ (RNA-binding domain-containing protein (Fragment) n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AS84_GONPJ)

HSP 1 Score: 89.0 bits (219), Expect = 4.150e-15
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 0 
Query:  132 YDNKGGGAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            YD   G +    Q PVP+ PP+ A +GNLPY + ++D+ EFF    +  + LVKDRE+G  KG+GYV FE +  L+ A+        GR +R++VA+P+ G   R  F D
Sbjct:   48 YDRDSGRSARPRQ-PVPNNPPYTAFLGNLPYDVHEEDLREFFHPLKLRSVRLVKDRESGQSKGYGYVEFEERGDLEMAVSDGGADFKGRRVRIDVAEPKEG--QRSTFDD 154
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A8H7IPR6_9PEZI (RRM domain-containing protein n=2 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A8H7IPR6_9PEZI)

HSP 1 Score: 89.4 bits (220), Expect = 4.560e-15
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 0 
Query:  137 GGAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQD 241
            GG    E+LP+P +PP+ A +GNL +   + DI +FF +C VT + +V+D+     KGFGYV F   DGL+ AL ++  Q  GRNIRV VA+P +     R F D
Sbjct:   56 GGYATREELPLPTKPPYTAHLGNLSFDATEGDIHDFFMDCDVTSVRIVEDKLDRKPKGFGYVEFGTLDGLKKALALSGTQFQGRNIRVSVAEPPKERMETRVFDD 160
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: A0A849I1E0_9GAMM (RNA-binding protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849I1E0_9GAMM)

HSP 1 Score: 80.9 bits (198), Expect = 6.860e-15
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0 
Query:  154 KALVGNLPYRIRDDDIMEFFQECG-VTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKP-----QRGGGNRRG 238
            K  +GNLP+++   D+   F   G +TD++LVKDR+TG +KGFG++TF      QAAL M + + GGRN++V +AK      + GGG  RG
Sbjct:    4 KIYIGNLPFKLEPADLRSAFARFGEITDLFLVKDRDTGRLKGFGFITFADASSAQAALEMNEQEFGGRNLKVSIAKERDDRGEGGGGGSRG 94
[Close]
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Match: I2K2T7_DEKBR (Eukaryotic translation initiation factor 4b (Eif-4b) (Fragment) n=1 Tax=Brettanomyces bruxellensis AWRI1499 TaxID=1124627 RepID=I2K2T7_DEKBR)

HSP 1 Score: 84.0 bits (206), Expect = 1.290e-14
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 0 
Query:  138 GAHESEQLPVPDEPPFKALVGNLPYRIRDDDIMEFFQEC--------GVTDIYLVKDRETGDMKGFGYVTFEAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGG 234
            G+ E E+ PVPDEPPF A V NL + + + ++ E F E          +TD Y  KDR TG ++GF +VTF  K  L+ AL ++  +L GR + + VA P R GG
Sbjct:   73 GSREXEEYPVPDEPPFTARVNNLAHEMDESELYELFVEGLGLKAAKEEITDFYAPKDRATGQLRGFAFVTFAEKALLEQALTLSPTELAGRTVYISVAAPDRRGG 177
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig802.19423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS6_9PHAE1.030e-3450.36RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A3N4KIL9_9PEZI3.160e-1849.47RNA-binding domain-containing protein n=3 Tax=Morc... [more]
A0A0D1ZLH0_9EURO1.200e-1747.47RRM domain-containing protein n=1 Tax=Exophiala si... [more]
A0A3N4KGI1_9PEZI5.760e-1646.15RNA-binding domain-containing protein n=1 Tax=Morc... [more]
UPI001069F6B71.630e-1546.94glycine-rich RNA-binding protein-like n=1 Tax=Dend... [more]
A0A1V9Z2N8_9STRA1.860e-1543.12RRM domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A139AS84_GONPJ4.150e-1540.91RNA-binding domain-containing protein (Fragment) n... [more]
A0A8H7IPR6_9PEZI4.560e-1543.81RRM domain-containing protein n=2 Tax=Lasiodiplodi... [more]
A0A849I1E0_9GAMM6.860e-1543.96RNA-binding protein n=1 Tax=Legionellales bacteriu... [more]
I2K2T7_DEKBR1.290e-1441.90Eukaryotic translation initiation factor 4b (Eif-4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 154..225
e-value: 1.5E-19
score: 81.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 157..223
e-value: 6.9E-14
score: 51.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..229
score: 14.88
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 139..234
e-value: 1.2E-22
score: 82.0
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 117..246
NoneNo IPR availablePANTHERPTHR23236:SF50EUKARYOTIC TRANSLATION INITIATION FACTOR 4Bcoord: 117..246
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 142..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig802contigF-serratus_M_contig802:190753..199905 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig802.19423.1mRNA_F-serratus_M_contig802.19423.1Fucus serratus malemRNAF-serratus_M_contig802 188823..212522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig802.19423.1 ID=prot_F-serratus_M_contig802.19423.1|Name=mRNA_F-serratus_M_contig802.19423.1|organism=Fucus serratus male|type=polypeptide|length=661bp
MSKDWAEADEETFPDVPEAAPPTPGQSSSPPGEKHVENDNYRDGRGGGGG
YGRDGGGGGYGRDGGGGGYGRDGGGRGYSRDGGGGGYGRDGGGGGFSRDG
GGGGFGRDGGGGGYGRDGGGRSGGYGQSGGGYDNKGGGAHESEQLPVPDE
PPFKALVGNLPYRIRDDDIMEFFQECGVTDIYLVKDRETGDMKGFGYVTF
EAKDGLQAALGMAQMQLGGRNIRVEVAKPQRGGGNRRGFQDGGFGGGRRS
YDQPQQGGGGGGFRQGGGMREDFGRRGQDSRGYEPPQGFGSGGFGGGSHR
GGDGFSRRGTHEGAEPGFGSFGSRGRDSRDRDDQSATSADGLAGPPRPDA
PQGGDNPPPTGERRRLKLQPRTKPPTEIAAVANPTKKASIFGGGKAHDEI
AYERAKAAAAANKEKDKDNGSAGREGGGGTRGGRGSPGGRGPSAGRGTGR
PGRGGVRSGVGGGGSNRGSDKGSDKGSDKGDAPKAGGTRPPTGDAPAAVA
TGSTPKPTGWGADAPPAAPANLSAQDSGEDGWHSAKPHQGNKHPPQGGKK
PPQGGKPRHEGNKQPQQDGKQPNQGGKQSNYSGKQSHQGGKQPHQGGKQP
NQGGKQPHQGGKPSGGKSSGGKLAPVAATTEAQVGDSTAAAATTVDNKFS
ALNVEDDDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf