mRNA_F-serratus_M_contig801.19415.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig801.19415.1
Unique NamemRNA_F-serratus_M_contig801.19415.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig801.19415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig801contigF-serratus_M_contig801:57581..57854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig801.19415.1prot_F-serratus_M_contig801.19415.1Fucus serratus malepolypeptideF-serratus_M_contig801 57595..57854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932395.3567433-UTR-F-serratus_M_contig801:57580..575941622932395.3567433-UTR-F-serratus_M_contig801:57580..57594Fucus serratus maleUTRF-serratus_M_contig801 57581..57594 +
1690964287.86454-UTR-F-serratus_M_contig801:57580..575941690964287.86454-UTR-F-serratus_M_contig801:57580..57594Fucus serratus maleUTRF-serratus_M_contig801 57581..57594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932395.3718143-CDS-F-serratus_M_contig801:57594..576711622932395.3718143-CDS-F-serratus_M_contig801:57594..57671Fucus serratus maleCDSF-serratus_M_contig801 57595..57671 +
1690964287.8782902-CDS-F-serratus_M_contig801:57594..576711690964287.8782902-CDS-F-serratus_M_contig801:57594..57671Fucus serratus maleCDSF-serratus_M_contig801 57595..57671 +
1622932395.3842514-CDS-F-serratus_M_contig801:57742..578541622932395.3842514-CDS-F-serratus_M_contig801:57742..57854Fucus serratus maleCDSF-serratus_M_contig801 57743..57854 +
1690964287.889842-CDS-F-serratus_M_contig801:57742..578541690964287.889842-CDS-F-serratus_M_contig801:57742..57854Fucus serratus maleCDSF-serratus_M_contig801 57743..57854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig801.19415.1

>prot_F-serratus_M_contig801.19415.1 ID=prot_F-serratus_M_contig801.19415.1|Name=mRNA_F-serratus_M_contig801.19415.1|organism=Fucus serratus male|type=polypeptide|length=63bp
MSGRSPPLYCTLTLIAMQGHQKQRTKIKRGQEDHDDAESSDPSTQQYSPE
SRRAAVGDHTRR*
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mRNA from alignment at F-serratus_M_contig801:57581..57854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig801.19415.1 ID=mRNA_F-serratus_M_contig801.19415.1|Name=mRNA_F-serratus_M_contig801.19415.1|organism=Fucus serratus male|type=mRNA|length=274bp|location=Sequence derived from alignment at F-serratus_M_contig801:57581..57854+ (Fucus serratus male)
GGGTCAACAGTATAATGTCGGGGAGAAGCCCACCGTTATACTGTACACTT
ACATTAATCGCCATGCAGGGACACCAAAAACAACGGACAAAAAGTACATC
ATCAAACAGTAATACAGACGAATACAGGACACCATTCAGTAATAAAGACG
AATACAGTACATAATTAAAAGAGGACAAGAGGACCATGATGATGCGGAAT
CTTCAGATCCAAGTACACAACAGTATTCACCTGAAAGTAGACGAGCAGCA
GTAGGAGATCACACGAGGAGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig801:57581..57854+

>mRNA_F-serratus_M_contig801.19415.1 ID=mRNA_F-serratus_M_contig801.19415.1|Name=mRNA_F-serratus_M_contig801.19415.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig801:57581..57854+ (Fucus serratus male)
ATGTCGGGGAGAAGCCCACCGTTATACTGTACACTTACATTAATCGCCAT
GCAGGGACACCAAAAACAACGGACAAAATGTCGGGGAGAAGCCCACCGTT
ATACTGTACACTTACATTAATCGCCATGCAGGGACACCAAAAACAACGGA
CAAAAATTAAAAGAGGACAAGAGGACCATGATGATGCGGAATCTTCAGAT
CCAAGTACACAACAGTATTCACCTGAAAGTAGACGAGCAGCAGTAGGAGA
TCACACGAGGAGGTAAAATTAAAAGAGGACAAGAGGACCATGATGATGCG
GAATCTTCAGATCCAAGTACACAACAGTATTCACCTGAAAGTAGACGAGC
AGCAGTAGGAGATCACACGAGGAGGTAA
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