mRNA_F-serratus_M_contig8006.19412.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig8006.19412.1
Unique Name	mRNA_F-serratus_M_contig8006.19412.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.590e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  593 RPGSTVFLGDTGAVVHVVASGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 691

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.290e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  665 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCS------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 763

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.060e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  665 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 763

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.130e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  535 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 633

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.080e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  448 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVICHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 546

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5L9C8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.150e-20
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  + DTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:   53 RPGSTVFLEDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 151

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.730e-20
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV V PG+  D++S N+IQ+ H I L++ GA
Sbjct:  810 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVAPGLALDIVSLNKIQDRHEIKLNRHGA 908

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.830e-19
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       V N+R P  EE  L++ +G  +P   +GDLD++ HC        +VRVTL NV VVPG+  D++S N+IQ+ H I L++ GA
Sbjct:  279 RPGSTVFLGDTGAVVHVVPSGEKVYNRRPPLPEERLLMLGDGTHIPGDFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILSLNKIQDRHEIKLNRHGA 377

[Close]

BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5LQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQP2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-18
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1

Query:   40 MSAVFASKRLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWF-----------DLISFNQIQETHPILLDKEGA 378
            M A+F + R GAT  +G T A  H    +  V N+RLP  +E  L++S+G R+PV  +GDLD+V HC+R+      V VTLT V+VVPG+             DL+SF++IQE + I+L  +GA
Sbjct:    1 MPALFPN-RPGATVFLGHTSAKIHVARSEDKVDNRRLPRPQEQLLMLSDGRRVPVKLFGDLDVVFHCQRD------VCVTLTGVSVVPGLVLMGVGALPGLALDLLSFSRIQERYDIVLKWQGA 117

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BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.180e-17
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1

Query:   64 RLGATTMIGDTGASRHTFGDDTHVRNKRLPAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVVPGVWFDLISFNQIQETHPILLDKEGA 378
            R G+T  +GDTGA  H       VR   LP  EE  L++ +G+ +PV  +GDLD++ HC        +VRVTL NV VVPG+  D++  N IQ+ H I L+++ A
Sbjct:  707 RPGSTVFLGDTGAVVHVVPSGEKVR---LPLPEERLLMLGDGKHIPVEFFGDLDVIFHCP------EDVRVTLQNVGVVPGLALDILPLNMIQDRHEIKLNRDRA 802

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig8006.19412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5JBS7_9PHAE	1.590e-20	43.81	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5JVD9_9PHAE	2.290e-20	43.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN41_9PHAE	3.060e-20	43.81	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAC2_9PHAE	3.130e-20	43.81	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JXN1_9PHAE	4.080e-20	43.81	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L9C8_9PHAE	7.150e-20	42.86	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L646_9PHAE	7.730e-20	42.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN93_9PHAE	6.830e-19	42.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LQP2_9PHAE	2.300e-18	41.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KYB5_9PHAE	7.180e-17	41.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig8006	contig	F-serratus_M_contig8006:7072..7449 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	378
Cds size	378
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932395.304676-CDS-F-serratus_M_contig8006:7071..7449	1622932395.304676-CDS-F-serratus_M_contig8006:7071..7449	Fucus serratus male	CDS	F-serratus_M_contig8006 7072..7449 +
1690964287.8504725-CDS-F-serratus_M_contig8006:7071..7449	1690964287.8504725-CDS-F-serratus_M_contig8006:7071..7449	Fucus serratus male	CDS	F-serratus_M_contig8006 7072..7449 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig8006.19412.1	prot_F-serratus_M_contig8006.19412.1	Fucus serratus male	polypeptide	F-serratus_M_contig8006 7072..7449 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig8006:7072..7449+
coding sequence from alignment at F-serratus_M_contig8006:7072..7449+

protein sequence of mRNA_F-serratus_M_contig8006.19412.1

>prot_F-serratus_M_contig8006.19412.1 ID=prot_F-serratus_M_contig8006.19412.1|Name=mRNA_F-serratus_M_contig8006.19412.1|organism=Fucus serratus male|type=polypeptide|length=126bp
QLPTSESRFLPHVMSAVFASKRLGATTMIGDTGASRHTFGDDTHVRNKRL
PAAEEAYLIISNGERLPVACYGDLDLVLHCERNGKPWSNVRVTLTNVAVV
PGVWFDLISFNQIQETHPILLDKEGA

mRNA from alignment at F-serratus_M_contig8006:7072..7449+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig8006.19412.1 ID=mRNA_F-serratus_M_contig8006.19412.1|Name=mRNA_F-serratus_M_contig8006.19412.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig8006:7072..7449+ (Fucus serratus male)
CAGCTTCCCACCTCAGAGTCGCGTTTTCTTCCCCACGTCATGTCCGCCGT
TTTCGCGTCGAAGCGTCTTGGCGCTACAACCATGATCGGGGACACTGGCG
CGTCGCGGCATACCTTCGGCGATGACACCCACGTCAGAAATAAGCGTCTG
CCAGCTGCGGAGGAGGCGTACCTCATCATCAGCAACGGCGAGCGGCTGCC
GGTGGCGTGTTACGGGGACCTCGACCTCGTTCTCCACTGCGAGCGGAACG
GGAAGCCATGGAGCAATGTTCGAGTGACGCTGACGAACGTTGCTGTGGTC
CCCGGCGTCTGGTTCGACCTCATCTCCTTCAACCAGATCCAAGAAACCCA
CCCCATTCTCTTGGACAAGGAGGGCGCG

Coding sequence (CDS) from alignment at F-serratus_M_contig8006:7072..7449+

>mRNA_F-serratus_M_contig8006.19412.1 ID=mRNA_F-serratus_M_contig8006.19412.1|Name=mRNA_F-serratus_M_contig8006.19412.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig8006:7072..7449+ (Fucus serratus male)
CAGCTTCCCACCTCAGAGTCGCGTTTTCTTCCCCACGTCATGTCCGCCGT
TTTCGCGTCGAAGCGTCTTGGCGCTACAACCATGATCGGGGACACTGGCG
CGTCGCGGCATACCTTCGGCGATGACACCCACGTCAGAAATAAGCGTCTG
CCAGCTGCGGAGGAGGCGTACCTCATCATCAGCAACGGCGAGCGGCTGCC
GGTGGCGTGTTACGGGGACCTCGACCTCGTTCTCCACTGCGAGCGGAACG
GGAAGCCATGGAGCAATGTTCGAGTGACGCTGACGAACGTTGCTGTGGTC
CCCGGCGTCTGGTTCGACCTCATCTCCTTCAACCAGATCCAAGAAACCCA
CCCCATTCTCTTGGACAAGGAGGGCGCGCAGCTTCCCACCTCAGAGTCGC
GTTTTCTTCCCCACGTCATGTCCGCCGTTTTCGCGTCGAAGCGTCTTGGC
GCTACAACCATGATCGGGGACACTGGCGCGTCGCGGCATACCTTCGGCGA
TGACACCCACGTCAGAAATAAGCGTCTGCCAGCTGCGGAGGAGGCGTACC
TCATCATCAGCAACGGCGAGCGGCTGCCGGTGGCGTGTTACGGGGACCTC
GACCTCGTTCTCCACTGCGAGCGGAACGGGAAGCCATGGAGCAATGTTCG
AGTGACGCTGACGAACGTTGCTGTGGTCCCCGGCGTCTGGTTCGACCTCA
TCTCCTTCAACCAGATCCAAGAAACCCACCCCATTCTCTTGGACAAGGAG
GGCGCG