mRNA_F-serratus_M_contig800.19411.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig800.19411.1
Unique NamemRNA_F-serratus_M_contig800.19411.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.700e-16
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEVARVDR 165
            +KEAY+AFEAL +HPF F S+ HG +PEIF IDGCAK+ TD VS  QF++ARV+R
Sbjct:   24 IKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVER 78
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BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.830e-16
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEVARVDRY 168
            +KE YYAFEAL +HP++F SYE G FPEI TIDGCAK+ TD+  T+QF++AR +R+
Sbjct:   45 LKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERH 100
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BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.620e-16
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEVARVDR 165
            +K+AY+AFEAL +HPF F S+ HG +PEIF IDGCAK+ TD VS  QF+ AR +R
Sbjct:   24 IKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAER 78
[Close]
BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 7.440e-13
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEVARVDRYSLLTVGRDPIEAS 207
            +++AY+AFE L +HPFDF SY +G+ PE+ +IDGCAKV +D  + A F+ AR +R   + +G   ++ S
Sbjct:   26 IRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMS 94
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BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.270e-12
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEVARVDRYSLLTVGRDPIEAS 207
            +++AY+AFE L +HPFDF SY +G+ PE+ +IDGCAKV +D  + A F+ AR +R   + +G   ++ S
Sbjct:   16 IRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQERLVDIDLGHQLLKMS 84
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig800.19411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JEL5_9PHAE1.700e-1665.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKH0_ECTSI4.830e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTI3_9PHAE8.620e-1661.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB33_9PHAE7.440e-1344.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE2.270e-1244.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig800contigF-serratus_M_contig800:309006..309270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932395.261867-CDS-F-serratus_M_contig800:309005..3092691622932395.261867-CDS-F-serratus_M_contig800:309005..309269Fucus serratus maleCDSF-serratus_M_contig800 309006..309269 +
1690964287.8370435-CDS-F-serratus_M_contig800:309005..3092691690964287.8370435-CDS-F-serratus_M_contig800:309005..309269Fucus serratus maleCDSF-serratus_M_contig800 309006..309269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig800.19411.1prot_F-serratus_M_contig800.19411.1Fucus serratus malepolypeptideF-serratus_M_contig800 309006..309269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig800.19411.1

>prot_F-serratus_M_contig800.19411.1 ID=prot_F-serratus_M_contig800.19411.1|Name=mRNA_F-serratus_M_contig800.19411.1|organism=Fucus serratus male|type=polypeptide|length=88bp
VKEAYYAFEALGEHPFDFTSYEHGYFPEIFTIDGCAKVATDSVSTAQFEV
ARVDRYSLLTVGRDPIEASHRRATASRGGAWMAITWAG
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mRNA from alignment at F-serratus_M_contig800:309006..309270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig800.19411.1 ID=mRNA_F-serratus_M_contig800.19411.1|Name=mRNA_F-serratus_M_contig800.19411.1|organism=Fucus serratus male|type=mRNA|length=265bp|location=Sequence derived from alignment at F-serratus_M_contig800:309006..309270+ (Fucus serratus male)
GTGAAAGAAGCATATTATGCTTTCGAAGCCCTGGGAGAGCACCCGTTCGA
TTTCACGAGCTACGAGCACGGATACTTCCCGGAGATATTCACTATTGACG
GTTGCGCTAAAGTGGCCACGGACAGCGTTTCCACAGCCCAGTTCGAGGTG
GCTCGCGTGGACAGATATTCACTATTGACGGTAGGACGCGACCCCATCGA
AGCTTCACATCGGCGAGCCACCGCATCAAGAGGTGGGGCATGGATGGCGA
TTACCTGGGCCGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig800:309006..309270+

>mRNA_F-serratus_M_contig800.19411.1 ID=mRNA_F-serratus_M_contig800.19411.1|Name=mRNA_F-serratus_M_contig800.19411.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig800:309006..309270+ (Fucus serratus male)
GTGAAAGAAGCATATTATGCTTTCGAAGCCCTGGGAGAGCACCCGTTCGA
TTTCACGAGCTACGAGCACGGATACTTCCCGGAGATATTCACTATTGACG
GTTGCGCTAAAGTGGCCACGGACAGCGTTTCCACAGCCCAGTTCGAGGTG
GCTCGCGTGGACAGATATTCACTATTGACGGTAGGACGCGACCCCATCGA
AGCTTCACATCGGCGAGCCACCGCATCAAGAGGTGGGGCATGGATGGCGA
TTACCTGGGCCGGAGTGAAAGAAGCATATTATGCTTTCGAAGCCCTGGGA
GAGCACCCGTTCGATTTCACGAGCTACGAGCACGGATACTTCCCGGAGAT
ATTCACTATTGACGGTTGCGCTAAAGTGGCCACGGACAGCGTTTCCACAG
CCCAGTTCGAGGTGGCTCGCGTGGACAGATATTCACTATTGACGGTAGGA
CGCGACCCCATCGAAGCTTCACATCGGCGAGCCACCGCATCAAGAGGTGG
GGCATGGATGGCGATTACCTGGGCCGGA
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