mRNA_F-serratus_M_contig80.19401.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19401.1
Unique NamemRNA_F-serratus_M_contig80.19401.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig80.19401.1 vs. uniprot
Match: D7FWH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.640e-45
Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 1 
Query:    4 SPIKKKRKLDGCPL-ATSARTLERTKNGDEQDPEVVMRALNNAVVEAGSSMIGGMENEDALEVLTELLAQEVIDPNVGDEILWSRYGGSPLHQACTLDLPEATKALLEHGASLVQVFNKKTPLEVALAKKDSRCVKVIMEHIEKLEKQARGSR 459
            +P+ K+RK    PL AT AR L + +NGD  D   V++AL NAV+   SS +   E+  AL++L ELLA++ +DPN GDE LW  YGGSPL+QAC LDLP   KALL+HGAS+VQV+  +TPL+ ALA+K SRCVKVIMEHIEKLE QAR  R
Sbjct:   15 TPVFKRRKTAASPLLATPARVLSQIQNGDTLDTGRVLQALCNAVI---SSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPCTAKALLDHGASVVQVYKGQTPLQAALAQKKSRCVKVIMEHIEKLETQAREGR 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWH3_ECTSI6.640e-4558.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:830078..836316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006620.1
Exons4
Model size1309
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19401.1prot_F-serratus_M_contig80.19401.1Fucus serratus malepolypeptideF-serratus_M_contig80 833742..835496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932393.5746813-UTR-F-serratus_M_contig80:830077..8301581622932393.5746813-UTR-F-serratus_M_contig80:830077..830158Fucus serratus maleUTRF-serratus_M_contig80 830078..830158 +
1690964287.0109656-UTR-F-serratus_M_contig80:830077..8301581690964287.0109656-UTR-F-serratus_M_contig80:830077..830158Fucus serratus maleUTRF-serratus_M_contig80 830078..830158 +
1622932393.599153-UTR-F-serratus_M_contig80:833714..8337411622932393.599153-UTR-F-serratus_M_contig80:833714..833741Fucus serratus maleUTRF-serratus_M_contig80 833715..833741 +
1690964287.0229416-UTR-F-serratus_M_contig80:833714..8337411690964287.0229416-UTR-F-serratus_M_contig80:833714..833741Fucus serratus maleUTRF-serratus_M_contig80 833715..833741 +
1622932393.6760092-UTR-F-serratus_M_contig80:835496..8363161622932393.6760092-UTR-F-serratus_M_contig80:835496..836316Fucus serratus maleUTRF-serratus_M_contig80 835497..836316 +
1690964287.0775776-UTR-F-serratus_M_contig80:835496..8363161690964287.0775776-UTR-F-serratus_M_contig80:835496..836316Fucus serratus maleUTRF-serratus_M_contig80 835497..836316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932393.6223493-CDS-F-serratus_M_contig80:833741..8338881622932393.6223493-CDS-F-serratus_M_contig80:833741..833888Fucus serratus maleCDSF-serratus_M_contig80 833742..833888 +
1690964287.0338473-CDS-F-serratus_M_contig80:833741..8338881690964287.0338473-CDS-F-serratus_M_contig80:833741..833888Fucus serratus maleCDSF-serratus_M_contig80 833742..833888 +
1622932393.6399097-CDS-F-serratus_M_contig80:834709..8348621622932393.6399097-CDS-F-serratus_M_contig80:834709..834862Fucus serratus maleCDSF-serratus_M_contig80 834710..834862 +
1690964287.0450828-CDS-F-serratus_M_contig80:834709..8348621690964287.0450828-CDS-F-serratus_M_contig80:834709..834862Fucus serratus maleCDSF-serratus_M_contig80 834710..834862 +
1622932393.6555843-CDS-F-serratus_M_contig80:835415..8354961622932393.6555843-CDS-F-serratus_M_contig80:835415..835496Fucus serratus maleCDSF-serratus_M_contig80 835416..835496 +
1690964287.0613716-CDS-F-serratus_M_contig80:835415..8354961690964287.0613716-CDS-F-serratus_M_contig80:835415..835496Fucus serratus maleCDSF-serratus_M_contig80 835416..835496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19401.1

>prot_F-serratus_M_contig80.19401.1 ID=prot_F-serratus_M_contig80.19401.1|Name=mRNA_F-serratus_M_contig80.19401.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MRALNNAVVEAGSSMIGGMENEDALEVLTELLAQEVIDPNVGDEILWSRY
GGSPLHQACTLDLPEATKALLEHGASLVQVFNKKTPLEVALAKKDSRCVK
VIMEHIEKLEKQARGSRKKGSSRCHN*
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mRNA from alignment at F-serratus_M_contig80:830078..836316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19401.1 ID=mRNA_F-serratus_M_contig80.19401.1|Name=mRNA_F-serratus_M_contig80.19401.1|organism=Fucus serratus male|type=mRNA|length=6239bp|location=Sequence derived from alignment at F-serratus_M_contig80:830078..836316+ (Fucus serratus male)
GGTTCGCCCATCAAGAAAAAGAGGAAGCTGGACGGCTGCCCTCTTGCAAC
ATCTGCACGCACACTCGAGCGAACAAAGAATGTAAGTTCTTGGGAAAACG
CGAAATTTGACTGTTTCGTTAAAAATCTCGTACTTCAAACGTAATCACCG
GGAGGCAGTGATGTCGAGCGATAACGTTGCATCGGAAGGAGATGCATCTG
CTCTGCTTTCACTTCGCCGTCTTCGGGAAGGATATCGGGGTCTGATTATC
GCAGAAATGTTTATTTCAGGTCCCAGAATGTCATGACCCCACCATGATTC
GAGATCTCTCAACAACGCCTCGTCCGACCATACTCTATTTTATACCAGTA
AGTTCAAGTAAGTCGTAGGACACACAGCGCACAGTACAAGCCAGCACGTT
CAACACTCCAAACAGCCAACCGCACACTGCATTTCCATCCTATCTTTTCC
GTTGATCGAATCGGTACTACGAGCGTGGAGGATTGTCCGTCAGTTGTAAC
CTTGTACGAAGCACCCTTGCGAACCGAGGGAGATCAAGATAATTACCTCA
TTGTTTCCGCAGAAGCTACAGCAGTACAGTACTTGTTCGTAGTGCGTTCT
CCAGCAGTGTACAAGTAGCTCGACTGCTTTTTATTTACAATAATATACCT
CCTCCATACCGTATTTTCTATTATAATCTTTTGTCAAGAGTTGTCCATAG
CAATTCACCAGCACTTGCAGCGCAAGGCTGTCTCGCAGCGATTCCGTTGT
CCTTTGGATGAGAACCGATTGCACTATTTACAGTAATACGGCGTACTCGA
GATAATACCCTGAGGACTATAATGATCCTGTGCCGGCGGGTTCTCGGCGA
TGAACGCCACCGGTACACAAAAACCACTGCGTGACCTGATGAAGTCGGGA
CTGGCCCGAGGGTGGTTGGCGTTATAGAGCTAGAATAGATGGACGCCGAC
GCGGAATACGGGAGGGAGGAGAGGAGCGGATGAGTAAGCACCAGATTCAT
CCTGGGTGTAGAGCATGAGCGGGCTGACGCAGCACTGGACGGCCGAATCT
ATTTCTTTAGACCAAATTCTCAGGCGCGAACGGAGGCAGGAAACCTTCCT
TTTCCCTCTTGAGCTGACCCCGAGCGGGACTGGTACGTGAACCATACCAT
ACCCGCTCTACAGTCATCGCCAACATCGAGGAGCGCTCACCCTGGGTACT
CTTACTGTTGTACACTCACGAGTTGTGTACAGTATTAATAGTAACACTGA
CAAATGAGATGCGCCTCGGATGTATGTATGGTCACAAATATAGCAAGAAT
ATGGATCAACCGGGTAAGGTTGCAAGTCCTACCTGCACGTGGTCAACTGA
ACAGGAAAAATGAATATTTCCCTGTCCGCGTTCGTGCCTGAAAATTTGGT
CTCGCGAGGCGGGTCCAGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTCC
ATACTCCGGCTGAATCTGATGCTTACGGGATTCCTCCCGAGTTCCGCGGC
GGCGTCCATTTATTCATTTATAACCGCCATACGCCATCGGGTCAGTCATG
AGTTTATCGAGTCACGCAATTGCGTACCGATGGCGTTTACTGCCGAGAGC
CCGCCGGCGCGGGGCCAGCAACCTTCAAGGTAGTTCCGAACGAGTGCTGC
CTTAGCAGGTCACCATGGACCAATTAATATTCGCCTCTCTCTCCCACACC
CACTATTGGTATGAAGTGGGCATGTTGAAAGTACCGGCGGAACACTGGAT
TGATGCATGACAGAGCACTCCAACAGTGCACTGTTTATATATCAAAACAG
TAGGAGTCTAGAGCCCTATTTACTATTTATAGTCTATTAGTGTAATACAC
CCTCGTGGAACGTTTCGTTTCTTGTATCTGATATGTTTTTCTGTATATTA
CAAGTAGTATCTTTAGAAGTTGTACTATACCGGTACTGTAGAGCCAGTTT
CTACTCCGGAGTACTACTTAATACAGTATTACGAGTACCGATTCCGATGC
ATCATCGCCCATAACCTCATCTGAAATACCATGGTACAGGGCTGGAAGTG
GTGCAGTTATTATGCCCATCAGTCCTGGGAACGCGTCCTCAAATTGAGAA
TCGAGCTCTGGGTTTTGACCCTCAGCTCTCCCAACATTTCATCGATTGCA
GTACGATAAACATCTGGATTTTCGTTGACTGTTTATAGTAAGCGGTTACA
GTAGCGGGCAGAATGGCAAAAATCCTCGATTTCTGGGGGAAAACTCAGAC
CTAGAAGCTTGTGCAGGTACTTTGGTCCGTTAtacatgTACATTATATGC
CCTTCCCTGTCCAGTAGTAACCCCTTGTTCATCAAGAGTTGCCGGCCGTC
CGATCGCCATTTTCCCACCCTGAACGTTGTTTTTATTATAAATTACAACG
GTTTGCCTTCCATGCAATCACTGCAGCCCCGAAACCGTAACTTGTCTTTT
TGGAGGAATTCAGGTATTCAGGTTGACACAAAAAGAGCCTATTGAAGCAA
CCAAGGCTGAAGCGTTAACGGGGCCCCACACACTTTTTTTCATCTGAACG
ATTAGCTCAGATTTTTCTAAAAAATACAGGACTGTCATCCAATAATCCAA
GCTCGGGTACTGTAATGGAGTGAATACGGGAGTGTTTTGCCTCAGAAAGT
ACAATTTTGGTATCAGCATGTGACAATCGCCGCAACCAGCTGTGGTGCAT
CGACATGTTCCAAACGTAAGAGTGCATAGTCACGTATCGTAAAAGGTTTG
TACATTTGGGCTTCGAAGGTCATGTACCGAGGTTCGGCGGCCGACTTTTG
GTGGTTTTGTGTAAACCCGGGAATAATCCAACCGCAAATGCCACAGAAGG
TGACTACACACATGTAGACAACTTTCTTCGGCGAAGTAGCATGTAGAAGG
TTGCCCTCTTCGGAGGGTACACTCCAGCAAGGTCTTAGGAGGTCTTCTGC
GCAAAACCGCGGTCTCGGGGGCGGTGTCAGGCTCAAGAGCGGAGAACCTA
CTGCTGTTCCTACTGCTGCTGCTGCTGCAGCTGTAGCCCTAGATCGGAAA
AAGCCCACCGAGAAGTCGGCCGCCGAACCTCGGTACATGACCTTCGAAGC
CCAAATGTACAAACCTTTTACGATACGTGACTATGCACTCTTACGTTTGG
AACATGTCGATGCACCACAGCTGGTTGCGGCGATTGTCACATGCTGATAC
CAAAATTGTACTTTCTGAGGCAAAACACTCCCGTATTCACTCCATTATAG
TACCGACGATACTCTTGCACTTGTATTTTTTAGAAAAATCTGAGCTTATC
GTTTGTTTGAAAAAAGTGTGTGGGGCCCCGTTAAACCCGATATTTCACGC
ACGTGATCCACATTTTTTAATGTGGACTAGTCAGCTCAAACCAAAACCAA
GCTATTTGAACGCCTCCAGAGGGTTTCCAGTCGAAATCCAAGGGGGTTTC
GGTGCAGCACATACGTTTTTCACAAAAGTATCACACTCTTGAGTTGAACC
AAGGCCCAGCTCTCGTTCCTCTTTTCCTCAAATGCTCCTTTTTTATTTCA
TGGAAATGGCAGGGAGTTCCAACGTTTCAAATATATGCACGAAGGTAAAA
CATTGAATTTAACCCCGTGATCACCCTGCCACCCCAGGGAGACGAACAGG
ACCCGGAAGTGGTGATGCGGGCGCTCAACAACGCCGTTGTGGAGGCGGGT
TCGAGTATGATCGGTGGCATGGAGAACGAGGACGCGCTCGAAGTCTTGAC
GGAGTTACTCGCCCAGGAAGTCATCGACCCAAACGTCGGTGACGAAATCT
TGTGGAGCAGGGTAAGGGATGCAACCGAGTGTTATCTGTCACAGCTTTAT
TGGAGTGTCTGTGTAGCCACTCATATATTGCTCCGGAGTATAATATATAT
GTACTTGGTGAAAGAAGTTAAACAATTTTGACAAAAATACTTGTACATAA
TATTGATATTAGTAGTTTCTACCAGTATTAAATAAGAGGTTGGGAGGAAG
GGGGGGGGTTATATACTGAATACAATGCAATAACGTATCTACATAAGAAC
CGTTTGTGCACACGTCTTAGCGCATGGCAGCCTTGAGAAGGGCGACGAAA
AACACAAGGCCTGTGATGGCCACGCCCTCGGGGTGTAGTATACTATTATA
TTATTAGCATGGACCAGCATTAAGTGGGATGCAGCGCAGATCCCGACGCG
AACGCATCGCTAACAAGTTCCATCAGTGTTGGTGTTAACCGAAACAAGAC
ACGCGGGCGGTGTGCGCAGTTCCATTATTTCGAAGCACAACGGCATCGTG
AGCGCATCACCCCGGGCATAGGGTCACCACGGCAGCTGAAGCGCCGAATT
TTTTTCTCCTGACTCTCTTTCTCTCTCCGCGCCCGGTAACTCCGTCACGA
GCCTTTTACTACTACTAACGCCTTGGTAACACTTCCACACACCAAAGAAA
CATGAGATAATACCACGACTCCCCTGCCCGTACCGATTGTTTCGACATCC
ACACCCCGACAAAATCATGGTTTGCAAGATTCCAATATTCGTCGACTTGT
GTGCCCAGTTAAAACGATTGCTCTCGAGCTTTATTCCACTTGTGCTCAAG
GGTAGCATTTTCCGTTGCCCTCCATGCCGCAGTATGGCGGAAGCCCTTTG
CATCAGGCGTGCACTCTGGATCTCCCGGAGGCCACGAAGGCGTTGCTTGA
GCACGGGGCTTCGTTGGTACAAGTGTTCAACAAGAAGACGCCCCTGGAGG
TGGCCCTGGCAAAGAAAGACTCTCGCTGCGTCAAGGTGGGAAAGAGAGTT
TCGTATTGTTTTTATTACAGACAGGAGGCGTACTTACGTATGGCACGGCC
GCCTTTTCCGTCTTCTAACGAAGCCTGTCGTTCGGTTACGCAATCGGTAA
AAAATATATATTTCCATGAACGGAACACCCTGAAGCGCGCCGATGGTACG
AACCTCTCTTGAACTCGTTTCAGAGTACTGTTGAGGGCCGAGAGGTGCGT
TATTTGTACTGCTACTGATGCTGCCCACGTCAAAATGCTCTAGATCCTCA
ACTGGTAACGGAAATAAAAGCTCAAGCTCTCTGGTGCTGCTGCTCTACCG
TTACGCGTTTGCTCGGCGAAAGCCTCCTCCTCACATTTGTTGTTTTTCAA
CCTTGGCAAAAAATGCCCCATATGGTGTTCGAGAGAAAGGGTTAGGAGGA
CATTTCCGTCACTTTTGTTCCCCGATGAAATGACCAAGCTACAAATGCGA
CACAGTTTGGTTGCGAGCCAGATCAACTTCCGGCTGTGTGATTTTTTTTT
CTCTCCCCCTATCTTTCGGCCGTAAAAAATCGCAACAGGTGATCATGGAA
CACATCGAAAAGCTGGAGAAGCAAGCACGCGGATCGAGGAAGAAAGGCTC
TTCGCGGTGCCACAACTAGCCCAAAACGCCTCGGATCCCGCGCGATGAAT
ATTTGCGACATGGCACGTTTACGTGGATTACGCTTGTTCGAGCCCGCAAT
GTGCGCGGACGGGGACGCTCCTCCCTCTCCCACAACGGTTCGACGGTACA
GCGCAGCGCCCGTCGCGTGCTTGCTGACGTGAGGGTGGCGGGGAGTTTAT
CCTGGGACATCGACTGGTGTCGTAATCGTAAAAAGTCAGATGCGCAGGCA
GGTGCGTCAAGCGTAGTAAACAAGGAGCCTCGTGAGCAAGAGCACCCACA
GTCGATCGGTCGAGTGGGATGAGTGTCGCGTGGTGTGTTTCGAATGTTTG
TTGATGGTCTTAGCACGGAGTCGTTGTCTGTAACCTCGACGCGTGGTCCA
CGTAATAATATAAAGTAGAATAACGGGCGTATTTTGCCTGCTGCGTGCGG
AGGTTTTTACGCGGCATTATTCCCCCTCACCCTCGCCCTCCGTTTGAGCT
GCTGCTACCAACCACGCACGTCAGCGGCGCGTGAAATTGGAAAATTCGGA
TCCTTGTTTTTTTTGCTCGATGGTAGGGTAATGTATAGATGCATTTCGTG
CCAAGCGGGCCGGCGGCGACCTTCCAGTTGCAGGCGGGCACGTGCTTGAG
AAAATCGCTTCCTTTGTCATTGTCCCGAAGGGCAGCCATGATGATTCCGT
TTTGTACGTGCACTCCGTGAGTGAAAGCAGTATATTCGCATACAGTTAGT
GGTGCAGATGCCTTTTTTTTTTTTTTGACCTACAGCTCAAAGCGTTTCCG
ATTTTTATATAAGGTTTTGAGTCTTCTGTCGAAACCAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig80:830078..836316+

>mRNA_F-serratus_M_contig80.19401.1 ID=mRNA_F-serratus_M_contig80.19401.1|Name=mRNA_F-serratus_M_contig80.19401.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig80:830078..836316+ (Fucus serratus male)
ATGCGGGCGCTCAACAACGCCGTTGTGGAGGCGGGTTCGAGTATGATCGG
TGGCATGGAGAACGAGGACGCGCTCGAAGTCTTGACGGAGTTACTCGCCC
AGGAAGTCATCGACCCAAACGTCGGTGACGAAATCTTGTGGAGCAGGATG
CGGGCGCTCAACAACGCCGTTGTGGAGGCGGGTTCGAGTATGATCGGTGG
CATGGAGAACGAGGACGCGCTCGAAGTCTTGACGGAGTTACTCGCCCAGG
AAGTCATCGACCCAAACGTCGGTGACGAAATCTTGTGGAGCAGGTATGGC
GGAAGCCCTTTGCATCAGGCGTGCACTCTGGATCTCCCGGAGGCCACGAA
GGCGTTGCTTGAGCACGGGGCTTCGTTGGTACAAGTGTTCAACAAGAAGA
CGCCCCTGGAGGTGGCCCTGGCAAAGAAAGACTCTCGCTGCGTCAAGTAT
GGCGGAAGCCCTTTGCATCAGGCGTGCACTCTGGATCTCCCGGAGGCCAC
GAAGGCGTTGCTTGAGCACGGGGCTTCGTTGGTACAAGTGTTCAACAAGA
AGACGCCCCTGGAGGTGGCCCTGGCAAAGAAAGACTCTCGCTGCGTCAAG
GTGATCATGGAACACATCGAAAAGCTGGAGAAGCAAGCACGCGGATCGAG
GAAGAAAGGCTCTTCGCGGTGCCACAACTAGGTGATCATGGAACACATCG
AAAAGCTGGAGAAGCAAGCACGCGGATCGAGGAAGAAAGGCTCTTCGCGG
TGCCACAACTAG
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