prot_F-serratus_M_contig80.19392.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig80.19392.1
Unique Nameprot_F-serratus_M_contig80.19392.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length159
Homology
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BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Match: D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 8.270e-29
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 0 
Query:   33 KRDREIQLRNFLLDLKGYGPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRLRLQRPGEP--EAEKFQG--GEILTGEDLAMSLGQRGIVVQDSGTILRCAGAA 148
            KR +E+QLR+F+L +  YG TVP E TRF LQRGGL+TSN QIVTLMSLA DH +ASIV +  + R +RLQ+  E   EA +  G  G++LT EDL++SL  RGIVV DSG +++ AG A
Sbjct:  315 KRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPA 434
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BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Match: A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.200e-28
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 0 
Query:   33 KRDREIQLRNFLLDLKGYGPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRLRLQRPGEP--EAEKFQG--GEILTGEDLAMSLGQRGIVVQDSGTILRCAGAA 148
            KR +E+QLR+F+L +  YG TVP E TRF LQRGGL+TSN QIVTLMSLA DH +ASIV +  + R +RLQ+  E   EA +  G  G++LT EDL++SL  RGIVV DSG +++ AG A
Sbjct:  352 KRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPA 471
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ87_ECTSI8.270e-2956.67Contains similarity to extensin (AtExt1) from Arab... [more]
A0A6H5L6F2_9PHAE1.200e-2856.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 52..68
score: 31.76
coord: 72..94
score: 20.87
coord: 116..138
score: 30.43
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 19..136
NoneNo IPR availablePANTHERPTHR21242:SF0TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 19..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:683522..688968 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19392.1mRNA_F-serratus_M_contig80.19392.1Fucus serratus malemRNAF-serratus_M_contig80 681429..689012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig80.19392.1 ID=prot_F-serratus_M_contig80.19392.1|Name=mRNA_F-serratus_M_contig80.19392.1|organism=Fucus serratus male|type=polypeptide|length=159bp
MAGHLKRSFEAPSESSEPPKKRQRVMTKEQIAKRDREIQLRNFLLDLKGY
GPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRL
RLQRPGEPEAEKFQGGEILTGEDLAMSLGQRGIVVQDSGTILRCAGAAAA
AAEEGGGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003923TFIID_30kDa