mRNA_F-serratus_M_contig80.19392.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19392.1
Unique NamemRNA_F-serratus_M_contig80.19392.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Match: D8LQ87_ECTSI (Contains similarity to extensin (AtExt1) from Arabidopsis thaliana n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ87_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 6.230e-25
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 3 
Query:  141 KRDREIQLRNFLLDLKGYGPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRLRLQRPGEP--EAEKFQG--GEILTGEDLAMSLGQRGIVVQDSGTILRCAGAA 488
            KR +E+QLR+F+L +  YG TVP E TRF LQRGGL+TSN QIVTLMSLA DH +ASIV +  + R +RLQ+  E   EA +  G  G++LT EDL++SL  RGIVV DSG +++ AG A
Sbjct:  315 KRAKEMQLRDFMLAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPA 434
[Close]
BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Match: A0A6H5L6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.700e-25
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 3 
Query:  141 KRDREIQLRNFLLDLKGYGPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRLRLQRPGEP--EAEKFQG--GEILTGEDLAMSLGQRGIVVQDSGTILRCAGAA 488
            KR +E+QLR+F+L +  YG TVP E TRF LQRGGL+TSN QIVTLMSLA DH +ASIV +  + R +RLQ+  E   EA +  G  G++LT EDL++SL  RGIVV DSG +++ AG A
Sbjct:  352 KRAKEMQLRDFILAVDEYGSTVPGEATRFHLQRGGLTTSNSQIVTLMSLAADHLVASIVHESSIFRNVRLQQAREQGREAAELLGEEGQMLTNEDLSLSLLSRGIVVSDSGLLVKAAGPA 471
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ87_ECTSI6.230e-2556.67Contains similarity to extensin (AtExt1) from Arab... [more]
A0A6H5L6F2_9PHAE9.700e-2556.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:681429..689012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue9.9e-08
Seed eggNOG ortholog552467.XP_003196568.1
KEGG koko:K03134
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Transcription initiation factor TFIID 23-30kDa subunit
EggNOG OGs3A6XY@33154,3P5W3@4751,3V1T0@5204,3VF9A@5234,COG5162@1,KOG3423@2759
COG Functional cat.K
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons4
Model size2592
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19392.1prot_F-serratus_M_contig80.19392.1Fucus serratus malepolypeptideF-serratus_M_contig80 683522..688968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932392.2609003-UTR-F-serratus_M_contig80:681428..6828211622932392.2609003-UTR-F-serratus_M_contig80:681428..682821Fucus serratus maleUTRF-serratus_M_contig80 681429..682821 -
1690964286.370447-UTR-F-serratus_M_contig80:681428..6828211690964286.370447-UTR-F-serratus_M_contig80:681428..682821Fucus serratus maleUTRF-serratus_M_contig80 681429..682821 -
1622932392.2867339-UTR-F-serratus_M_contig80:682843..6835211622932392.2867339-UTR-F-serratus_M_contig80:682843..683521Fucus serratus maleUTRF-serratus_M_contig80 682844..683521 -
1690964286.3853927-UTR-F-serratus_M_contig80:682843..6835211690964286.3853927-UTR-F-serratus_M_contig80:682843..683521Fucus serratus maleUTRF-serratus_M_contig80 682844..683521 -
1622932392.365396-UTR-F-serratus_M_contig80:688968..6890121622932392.365396-UTR-F-serratus_M_contig80:688968..689012Fucus serratus maleUTRF-serratus_M_contig80 688969..689012 -
1690964286.433873-UTR-F-serratus_M_contig80:688968..6890121690964286.433873-UTR-F-serratus_M_contig80:688968..689012Fucus serratus maleUTRF-serratus_M_contig80 688969..689012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932392.3064713-CDS-F-serratus_M_contig80:683521..6836181622932392.3064713-CDS-F-serratus_M_contig80:683521..683618Fucus serratus maleCDSF-serratus_M_contig80 683522..683618 -
1690964286.4031768-CDS-F-serratus_M_contig80:683521..6836181690964286.4031768-CDS-F-serratus_M_contig80:683521..683618Fucus serratus maleCDSF-serratus_M_contig80 683522..683618 -
1622932392.3233364-CDS-F-serratus_M_contig80:683962..6841181622932392.3233364-CDS-F-serratus_M_contig80:683962..684118Fucus serratus maleCDSF-serratus_M_contig80 683963..684118 -
1690964286.4142911-CDS-F-serratus_M_contig80:683962..6841181690964286.4142911-CDS-F-serratus_M_contig80:683962..684118Fucus serratus maleCDSF-serratus_M_contig80 683963..684118 -
1622932392.3368404-CDS-F-serratus_M_contig80:688744..6889681622932392.3368404-CDS-F-serratus_M_contig80:688744..688968Fucus serratus maleCDSF-serratus_M_contig80 688745..688968 -
1690964286.4242644-CDS-F-serratus_M_contig80:688744..6889681690964286.4242644-CDS-F-serratus_M_contig80:688744..688968Fucus serratus maleCDSF-serratus_M_contig80 688745..688968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19392.1

>prot_F-serratus_M_contig80.19392.1 ID=prot_F-serratus_M_contig80.19392.1|Name=mRNA_F-serratus_M_contig80.19392.1|organism=Fucus serratus male|type=polypeptide|length=159bp
MAGHLKRSFEAPSESSEPPKKRQRVMTKEQIAKRDREIQLRNFLLDLKGY
GPTVPTETTRFFLQRGGLSTSNEQIVTLMSLAVDHAMASIVRDCQLSRRL
RLQRPGEPEAEKFQGGEILTGEDLAMSLGQRGIVVQDSGTILRCAGAAAA
AAEEGGGS*
back to top

mRNA from alignment at F-serratus_M_contig80:681429..689012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19392.1 ID=mRNA_F-serratus_M_contig80.19392.1|Name=mRNA_F-serratus_M_contig80.19392.1|organism=Fucus serratus male|type=mRNA|length=7584bp|location=Sequence derived from alignment at F-serratus_M_contig80:681429..689012- (Fucus serratus male)
GAACGACGCCCACATTTACTACCCTCTAGGGACAACTAGGATCGATGGCA
GGCCACTTGAAAAGGTCATTTGAGGCGCCCTCTGAGAGCTCGGAACCTCC
GAAAAAAAGGCAGAGAGTCATGACAAAAGAGCAGATCGCCAAACGAGACC
GTGAGATCCAGCTCAGAAACTTCCTTCTTGATCTGAAAGGATATGGACCA
ACTGTCCCGACCGAGACCACGCGTTTCTTCCTTCAGAGGGGCGGTTTGTC
GACCTCGAACGAGCAGATGTGAGTGGTCCGCTAGGCAGGAAGTGACTAGA
GGAAAATCTACAAAGCTCCGATTGATTTCAATGGAAAGCTGTATCACGGT
TTATACTCTACTCTGGACCCCGCGTCTCGAAATCGGTAGTATGTACGAAG
TACTTGTATAGCCTAAAGCAAGCGGGCTCGTGCTGGTTCGCTCGCCCTTG
TTGACTAGCCACAAGTGGCGCGAACTTGTGCCCTCAGGGCGTTTGGTTTG
AAGATGTCATGACGTCTTTCTCTGGTGTTACTTTTTTTTGTTTTGCTTCG
TTTTCGTCTTTATGCTTTCGTTGAAGCCGGGTCCCTTCGTTCAATCGTCC
TTCGATATGTAATAGCCCGTACTTTCAACATGCCCACTTCATACCAATAG
TGGGTGTGGGAAAGAGGCGAATATTAATAGTTGGTCCGACCTGCTATGGT
CATTACATATAGTACAGTATGGATCAACCGTGTAAGGTTGCCAATCCTGC
TCGTGGTCAGCTGAACAGGGAAACTTAATATTCCCCTGTTCCCGTATGTG
CCTGAGAATTTGGTCTCGCGAGACGGGTTCAGTCGTCCCGTCCCGCGTCA
GCCTTCTCATTCTCAACAGTAAAATGTCTAGGAGAAGCCCACCGTTATAC
AAGACGCGATAAGCTTGGATTACAGCTCATCCTAGATGTAGTCTATTAAT
AGACGTGATACTGGAAATTGTCCAAAAACTAAAGTAATACTTAATTTATT
AGTGTACAGTACAGTACCATAGCGATAATGGTATACTGGTATGACAGTAT
TAATAGGTGTCATCGAACAATACCACTATACCTGGTACATTGTAAGCTGT
AGTGTGTTACATAATAAAAAAAAAACGTGATGATATTATAGGATTGTAAC
CTGATCAGTCAAAAGGTTTAGGTGGGAACATTGGCTGTAGGTACAAAAAC
CTCTACAAGGTAGTATTAAACGGGTTCCCCAATGTAGTTACATAGGGTCA
ACAGTATAATATCGGGGAGAAGCCCACCGTCATACTGTACACTGACATTA
ATTGCCATGTAGGGACACCAAGACAAAACCAAGAGCAATATCAGACCATG
TATACAATATTTTTGGGCTACGAATATTAGTCTACGGTACAGTAATATGG
TATAGAAGAATGTAAAGTTAAAGCTGAGGTCTGGTGTTCGTTGGAAAAAA
TTGTTTCGATACGGGAGATCGTCCCATTGTTATACTACCAGGTATATAAT
TTACATTAAGGGACTAGGATTACAGTACAGTAGGGGTCCCGTTATAGCGA
CCTCCTCAATAGCGATATGCCCTGAATAGCGACTCCAAAATCGCTTGGCA
CCAATGCACCCCGATATAGCGACTCTTGGTCGCTATATCGGAACGAGTCC
GATATAGCGACCCTTCGTCGCTATATCGGACTCTCTATGCTGCGCTCGCG
GAGCCCCAGCCTGCCGCCCACAGGCGATGATACACGAGTTGCCGCCACCC
ATCACCTCCTGACATCATGCCATGCGCAGCTGGAGACCTGTGCCAACTCC
CAAACGACCTGGTCGCTATTGAGGAATAGCGACCCCTCCCTGAATAGCGA
CCTTTTTCTCGCCTGCCACTAGGGGTCGCTATAACGGGACCCCTACTGTA
ATGTGATCCTGGAAGAAATATACTGGTAGGTCAATGTTATTATTACGATA
GCAGATACTTGCTACTCATAGATATGGGAGGCCTCAGTCTACAACGGACC
GTAGGGACTGATATACAGCAATGGAAGCAGGTATAAAGTACGTATAACAT
CAGTGATGGAAATGCAGGCTATGTAAGATCAGGAGGAGTAAAGTCCGTGT
AACCAGTAAAAACAAAAGGTTTGGGTTAAATATTTCAAGAAAGGCGAAGA
GGGCGGCCAGCAAATATCTTCAACATAATATAGAACAGACCAAACACCGT
TGTTCACCTGAAGGTAGACGCAGCAATGGAGAGTGATAGTCGCAAGTCGT
ACGAGGGAGTGAGGACCAGGTAGGTGGAGAACTTTCCTTACTGTCAAGTC
AGGTCTACTGCTCACACGAAGGCTCCTCAAAACAGTACAGGTCCACGTGC
GACCTAACACAAATTAGAAGCTTCGGCTGCAAAAACCAAATGACTGACAG
GCTCCTCACAACCAAGTAGTAGACCTACGACACCCAAGATGTCCCTTGAA
CCGGTTGTTTTACAACACGCCTATAGGGGACTTTATACAATGTTTATCTA
CATGTATTCAGTACGCGTATTCCACTCTACGTGTTCGATTTGTGACAGCA
GGATGATTAGTTATTAGCATAGGACAGTTAATAGTATTAATAGTGGAAAT
CAACAGTATAATGTCGGGGAGAAGCCCATTGTTATACTGTACACTTACAT
TAATCGCCATGCAGGGACACGAGACAAAAACAAAACAAAAACAGAATCAA
TGTAGTACATATGCCGGTACTTTCAGCATGCCCACTTCATACCAATAGTG
GGTGTGGGAAAGAGAGGCGTATATTAATCGGTACATGGTGGCCTGCTAAG
GCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCCTGCAG
ACTCTCGGCAGTGAACGCAATCGGTACGCAATTGCGTGACCCGATAAACT
CGGGACTGACCCGATGGCGTATGGCGGTTTAATATAAATATATGGACGCC
GCCGCGGAACTCGGGAGGAATCCCGTAAATAAGCACCATATTCAGCCTGA
GTATGGAGATGAGCAGGATGACGGGGGACGGGACTGCCGAAATCGTCTCG
CGAGACCAAATTCTCAGGCACGAACGCGGACAGGGGAATACTCTTTTTCC
TGTCCAACTGACCACGAGCAGGATTGGCAACCTTACACGGTTGATCCATA
CTCTTGTTATATGTGTGACCATACATATCCGGGTACTTCCAACATGCCCA
CTTCATACCAATAGTGGGTGTGGGAAAGAGAGACCCATATTAATGGGTCC
ATGGTGACCTGCGAAGGCGTTCGGAACTACCTCCTTGAGGTTTGCTGGCC
CTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGATACGCAATTGCGTG
ACCCGATAAAATCGGGACCGACCCGATGGCGTATGGCGATTTTATATAAG
TTATGGACGCCGCCGCGGAACTCGGGAGAAATCACGTCAGTAAGCACCAG
ATTCAGCCTGGGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGTCG
AACCCGTCTCGCGAGACCAAATTTTCAGGCGCGAACTCCGACAGGGAAAT
GTTAATTTTCCCTATTCAGCTGACCACGAGCAGGATTGGCAACCTTACCC
GGTCGATCCATATCTTGCTGTACTGGTATGTGTGAGCGACCATACATCAT
CAAACATGGTGGCACTAATATACTGTTACATAAGCTGTAAAGACGAAGCC
TCCACTTGGTATTTAAACAAGTTCCCCGATGGTGGTAACCTTAGATCAAC
AGTATAATGTCGGGGAGGAGCCCACCGTTTTACTGTACACTTATATTGAT
CGCCATGCGGAGCCACCAAACATAACAAAACAGAAAACACTGTCTGTAGT
ACATAGTTAAGAGGGTATCATAGTAATGATATACGATAACAGTCCCATCG
AACCATACAAAAGTTGGGGCTTGGGTCAATCGCCATGCGGAGCCACCAAA
CATAACAAAACAGAAAACACTGTCTGTAGTACATAGTTAAGAGGGTATCA
TAGTAATGATATACGATAACAGTCCCATCGAACCATACAAAAGTTGGGGC
TTGGGTCAACAGTAAAATGTCGGGGAGAAACGTGTTGATTCACACATTCA
GCGTATTGTCCTTGCAACCGAAGAAACTACGGTGCCAGAACAAGTCAGCC
ATAGACTATGACCTATCAGATGTCAATCCCGCTATTGATATTGCTATTGA
TAGTGGTCACAAAAGAGGTACACAAAGACCGGACCGTTATATAGTCTATA
TATATATATATATTTATAAACAGGAAGCGCTATTAATAGTGTGGGCAAGG
AACACACTATAATATTAATAGGGCATCTCAACTGTTATTAATAGTGTCCT
ATTCTCAAGGAAGACCTCACCTCACCCCATTAATATTAATAAAACGTGAA
GAACCTTATCGTTACACTTTCGCAATCCCCTGGAAGATAGATACCATACC
GTCTGTACTCGTACTGTTGCTGTAGAGTTATGCCGCCTTGGAAGCTCTTT
GCTATGATAGAGCCTCAGAAGATATCGTGCTTGGTATCGAACAGACGACC
GGCGCTTTGCGTTGCTTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCA
TTCCTTTCCCTCATCGACCGTGAAGTCGAATTTTGTGTACTAACGAGTTA
CGAATCGTTCTTCACTTGTTGGACGTTTTTGTTTTGTTTATTCGAGAGGA
AAAATGTCAGGTCGTGTGACGACACCGAGATTCGAACTCACGTCCCAACG
TCAGAAGGCTTCGAGGTTACCAACTGAACCACCGGGGCGTTCGCCTATTG
CAGTATTTATACTATAGTACCTCACCTCCATTTAGAACTCTCTTGACGAT
CGACTGGCCCCTCGTTCTTCGTCTGTCGGGGTGATAATATGCAGTGTGAC
CCTCATGTCCCTGGCCGTGGACCACGCAATGGCAAGTATCGTTCGAGACT
GTCAGCTTTCGCGGCGTCTTCGCCTCCAGCGTCCGGGAGAGCCGGAGGCC
GAAAAATTTCAGGGCGGCGAAATTCTGACGGGCGAGGACTTGGCGATGAG
GTATGGGAGAGGGGGCGGGCGCTCTCGTTGCCCACTGTTTTGGAAAGAAA
GAGCTGGACGCCATGACCTGTAAGGACATTCAGTCGGAGCTCGCACGCGC
ACGTCCCGGTGCTTTCGTCCTCCGTCGCTGCTATATATTTTGTTGCGGAC
GGCTTCGCGGATAATCTGCAGGCGGAGATGAGATGATAACGTATGGTGGT
CTAGATTGGTCTTGGAAGGAGAGGAGAGTCCATGAACAAGTGTTCCATCT
CGTTTCCGTCGATTTTTTTTTTCAACTCCGCGCAACAATACTATGAACCC
TTTCGCGGCGTCCCACACTTTTCCCACGGCGCTTCTGCATGAAGTCTCGG
CCAGCGTGGCATTGTCGTGCAGGACAGCGGCACGATATTAAGATGCGCGG
GGGCAGCTGCTGCGGCCGCAGAGGAGGGCGGCGGGTCATGATTCACCCGT
CACATTCCCTGCAAGCAAAACTATTATAGTCTCACGGCTCAGAAGATCCT
TCTGCTCTCTATTAAGACGAACGTTGGGGCGGGGGCGGGGGCAAGGTTCT
GGAGCTATTTTTAATTCGGTGCTATGTGCATGCTGCCGTAGAGAGAGGTG
CAGTGTGCACTGGAGGTGGAGCGCGGGTCGGTGGTATCAACACAGAAACC
GCGCGGAACAGCCGAAGTTTTCCCTGGGCGTGGCATGCCCGCGGGCTTCA
AGAGGCTGGCAAAGGTCTTGATGACATCATCACGAGGTCGTAGGGCACTG
GCCGGCCTCCAGGTGGTACATAGAACCACCCCCGACGCTACAGGAGAAAA
ACCACCGGTCATGATGATACTTTATAGTGTGCATGTCGCGGTTCCCTCCC
ACTCCGTAGGCTGCCAGATCGGCGGCGTCTGTCTGCGACCCCTCGTTGCC
CCCCACCGCCGTCTGTCGCTTCACGAGGAGAGCCGGTATCAGCAAGATGG
ACATCGTTATCTCGCTCAAACAACCGATACAGTCTAAACAGGCGAACGCC
AACAGCATGATGGGGCATTTTTTCCTCGCGGCCATGACCTGACCAGCGTT
ACCGCCTGGGAACAAACTGACGAGGAAGAGGGGACCCAGACGCCACATTC
AGTACCTAGGCCACCAGGTGTAACCTGCGAGAGATGACGAGGCCTTGAAA
CTGCGGGCGCCGCTGGGGTCGTGATCGGCGCTGTAGTTCGCTAATTTTTG
GGCAACTCGTCCAGTACCGTATTGAGCAAGATCTAAACCGGTGGAAGAAA
AGCCGATGGCGGGGGGCGTTACCCAGCGAAAAATGGTTTCAGTGGCCGCA
GCTTTTCTTCATGGCCTGGAAGAGCTTCGTAATTGGTACCGTACTGATAT
ATTCTAGGGGACGTGATCTAGTCTAGAAGACGGACCAATCGGATCGTCGG
ATGGCTTATCGTCACTAAAGGTGGAGAGAGGGTTGTAGAGAGTGCTATTA
CACAATAAATAAGACGTCGTAGCTTAGCTCTCAAAAGCTACAGTGTCGAC
GATATATTGCGGGAAAGAGTGCAACGGCGCGTCGAGCAATCTTTCTGGGG
AATTGAGTGATCCGGTCTTTCCACGAGGGATTCAAGAGAGGGTTTTGGGA
GTCCGATTTTATTTGAAAGAGCCTGCTTTTTGAATCCCTCTTGACTTGGT
TGTAGAGCACGCATGCATTCTCGAAACGATCGCTCTCCGTTCGAGGTGTT
TTTGCTTTAATCTATCCCTGTCCACACAAACTCGAATACTGTACTGTACA
TAGAGTGGCATGAGCGTAATATTTATTTTAATAGGAGATACAAATCGGGG
GTGGGGCGTTCTGAGAGCGGCCCACGTTAACCGGCGCCACAATAGCTATA
CAATACCAGGTATACAATACAGTACCAAGGAATAATGACTTTTCCAAAAT
TGAAAATTGGGGGGATTGGAGGCGGAGATAGATAGTTGTGGTATGTACTG
GATATAGTATGTACTGGTATGTATGTATGTATGGTCACTAGCAAGAGTAA
GGATCAACCGGGCAAGGTTGCAAATCCTGATCGTGGTCGGAAAAAAAAAA
CTCATTGTGTCTAGAATCGAACTCGTGAATCCGCATTGGTGCTATTAAGT
GAATCAGCGAGGTAATCCACCAACAATATGTACTGCACTCGGGCGATGAC
TGACTACAAAGGTAGATAAATATTTATACTGGGACTGGGAGTATTTTTCT
TGACTGGTAAAGTGGTACAAAATTGCCGTAGAAACTCCAGAAGCAGCCTT
CTATCTTCTGTATTTAAAAGTGTATAGGGAGGGTGTAGCAGAAACAAACG
CAGAACGTGTACTGAGTAATAAATAATAAGGCGCTATAGGGCTATATAGA
CTAATCGTGTAGAGATGAAAGTACTGTTACTATTACTAGATGGTCCTGTT
GGTAGTGTAGGAGACTTGATGCACTACAAGTTGGCGAGAAGTGGCACAAT
CTTCACTCAGAAATACCTGAGAACTCACATTCCACAGCTACTGACTGGTA
AGGCAAAGCTCACTTTTAGATGTGCACAGGCCCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig80:681429..689012-

>mRNA_F-serratus_M_contig80.19392.1 ID=mRNA_F-serratus_M_contig80.19392.1|Name=mRNA_F-serratus_M_contig80.19392.1|organism=Fucus serratus male|type=CDS|length=954bp|location=Sequence derived from alignment at F-serratus_M_contig80:681429..689012- (Fucus serratus male)
ATGGCAGGCCACTTGAAAAGGTCATTTGAGGCGCCCTCTGAGAGCTCGGA
ACCTCCGAAAAAAAGGCAGAGAGTCATGACAAAAGAGCAGATCGCCAAAC
GAGACCGTGAGATCCAGCTCAGAAACTTCCTTCTTGATCTGAAAGGATAT
GGACCAACTGTCCCGACCGAGACCACGCGTTTCTTCCTTCAGAGGGGCGG
TTTGTCGACCTCGAACGAGCAGATATGGCAGGCCACTTGAAAAGGTCATT
TGAGGCGCCCTCTGAGAGCTCGGAACCTCCGAAAAAAAGGCAGAGAGTCA
TGACAAAAGAGCAGATCGCCAAACGAGACCGTGAGATCCAGCTCAGAAAC
TTCCTTCTTGATCTGAAAGGATATGGACCAACTGTCCCGACCGAGACCAC
GCGTTTCTTCCTTCAGAGGGGCGGTTTGTCGACCTCGAACGAGCAGATTG
TGACCCTCATGTCCCTGGCCGTGGACCACGCAATGGCAAGTATCGTTCGA
GACTGTCAGCTTTCGCGGCGTCTTCGCCTCCAGCGTCCGGGAGAGCCGGA
GGCCGAAAAATTTCAGGGCGGCGAAATTCTGACGGGCGAGGACTTGGCGA
TGAGTGTGACCCTCATGTCCCTGGCCGTGGACCACGCAATGGCAAGTATC
GTTCGAGACTGTCAGCTTTCGCGGCGTCTTCGCCTCCAGCGTCCGGGAGA
GCCGGAGGCCGAAAAATTTCAGGGCGGCGAAATTCTGACGGGCGAGGACT
TGGCGATGAGTCTCGGCCAGCGTGGCATTGTCGTGCAGGACAGCGGCACG
ATATTAAGATGCGCGGGGGCAGCTGCTGCGGCCGCAGAGGAGGGCGGCGG
GTCATGATCTCGGCCAGCGTGGCATTGTCGTGCAGGACAGCGGCACGATA
TTAAGATGCGCGGGGGCAGCTGCTGCGGCCGCAGAGGAGGGCGGCGGGTC
ATGA
back to top