prot_F-serratus_M_contig126.1936.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig126.1936.1
Unique Name	prot_F-serratus_M_contig126.1936.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	585

Homology

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BLAST of mRNA_F-serratus_M_contig126.1936.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.680e-91
Identity = 193/440 (43.86%), Postives = 255/440 (57.95%), Query Frame = 0

Query:    9 ATRTHPDAELGTEVGGSNECLVRLSVANVFNHNQTQEVTIHSTSTIGDLKATIQDVFDSKPAPQQQRLIFRGKHC-EDRQQLRHTLRGLDLSSQHSMDLIVTRPLGQ---------------TTRSQSSSRANPERSHQHQGSSIGSGTSPPAGPGESP--------------PARIELTALQVQQLRWQYEHALWEIRRTFAAQQERYEFITGMSAVLDGQLGNVSGLGQPQSSSQQSVWR---PSAAMES-----------------EVATVAATRALGGNMPGPAAGAAVRDVTGPPPEGFIPAAGLDVNGEEGRGNMVDPA-RAPDLRREARGYFKMVLQCLGVVIVFGIDADGWILVMLALGGFAALLYKTGLLETMLGGGQGRGGLWKALCSAATVITDGGGLLMDVRYICSAFFLSLFPTWKPKRSAEATAAE 397
            A R+HP+AE+     GS+   V+L V +V+ H  ++  ++ +T TIGDLK  +Q+ F S+PAPQQQRLIFRGK C E+ QQL H +RGLDLS QH+M LIV++P+ Q               T +  S  +  P         S+ S ++ PA P ++               P  ++L+  Q++QL+                 ++R+ F++  S  L                +QQ  +R   P+A   S                 EV+  AATRALGGNMPGPA G  VRDVTG PPEG IPAAGL   GE  RGN+VDPA  APD+ REAR + KMV QC+GV++VFGIDADGW+L +LALGG  A L++TGLL+ +LG G+  GGLWK LC+ ATVIT+GGG+L+D RY  SAFF SLFP W+P RS EA A +
Sbjct:   15 AGRSHPEAEMIAAARGSDGTPVKLFVTDVY-HRSSKVFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPAGGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXSNERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRAL----------------TQQRQYRHRTPTATYSSPXXXXXXXXXXXXXXYTEVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGLGQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQ 437

[Close]

BLAST of mRNA_F-serratus_M_contig126.1936.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.600e-33
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 0

Query:  298 MVLQCLGVVIVFGIDADGWILVMLALGGFAALLYKTGLLETMLGGGQGRGGLWKALCSAATVITDGGGLLMDVRYICSAFFLSLFPTWKPKRSAEA 393
            MV QC+GV++VFGIDA+GW+L +LALGG  A L++TGLL+ MLG G+  GGLWK LC+ ATVI +GGG+L+D RY  SAFF SLFP W+P RS EA
Sbjct:    1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEA 96

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig126.1936.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig126.1936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL52_9PHAE	1.680e-91	43.86	Ubiquitin-like domain-containing protein n=1 Tax=E...	[more]
D7G6U9_ECTSI	7.600e-33	64.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 459..490
None	No IPR available	COILS	Coil	Coil	coord: 522..544
None	No IPR available	GENE3D	3.10.20.90		coord: 23..112 e-value: 1.8E-15 score: 58.4
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 337..584
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 317..336
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..293
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 312..316
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 294..311
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 40..91 e-value: 4.0E-7 score: 29.7
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 30..113 score: 12.988
IPR039751	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2	PANTHER	PTHR12943	FAMILY NOT NAMED	coord: 10..474
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 26..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig126	contig	F-serratus_M_contig126:16856..19800 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig126.1936.1	mRNA_F-serratus_M_contig126.1936.1	Fucus serratus male	mRNA	F-serratus_M_contig126 15808..20080 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig126.1936.1 ID=prot_F-serratus_M_contig126.1936.1|Name=mRNA_F-serratus_M_contig126.1936.1|organism=Fucus serratus male|type=polypeptide|length=585bp
MTIETETPATRTHPDAELGTEVGGSNECLVRLSVANVFNHNQTQEVTIHS
TSTIGDLKATIQDVFDSKPAPQQQRLIFRGKHCEDRQQLRHTLRGLDLSS
QHSMDLIVTRPLGQTTRSQSSSRANPERSHQHQGSSIGSGTSPPAGPGES
PPARIELTALQVQQLRWQYEHALWEIRRTFAAQQERYEFITGMSAVLDGQ
LGNVSGLGQPQSSSQQSVWRPSAAMESEVATVAATRALGGNMPGPAAGAA
VRDVTGPPPEGFIPAAGLDVNGEEGRGNMVDPARAPDLRREARGYFKMVL
QCLGVVIVFGIDADGWILVMLALGGFAALLYKTGLLETMLGGGQGRGGLW
KALCSAATVITDGGGLLMDVRYICSAFFLSLFPTWKPKRSAEATAAETAA
REAPQGAEAAAREATLAADAAAQEVARDAETAEQEAARGAEVAAQEAARD
AEATAPEAVRDAEAAALEAVRDAEAAAQEAVQAAETATELAQVAEVVAAE
AVAQEAAQATEDATELAQVAEVVAAEAEVVAAKAEAKAEAAEVMTVEAAK
AVVEEAERTPAVIPSVQATDVGEDGARLAPSEVD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR039751	HERPUD1/2
IPR029071	Ubiquitin-like_domsf