mRNA_F-serratus_M_contig80.19372.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A6H5L0U1_9PHAE (Copper homeostasis protein cutC homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U1_9PHAE) HSP 1 Score: 268 bits (684), Expect = 2.120e-84 Identity = 157/275 (57.09%), Postives = 190/275 (69.09%), Query Frame = 2
Query: 44 IMEQATNSESVKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIPWGSPRQ-SSVSLG-PSEGPSAV-IRRVSRRLVSEILNTLA 859
I+ + V LECCLEG+ESA QA GGAHR+ELCANL+QGGVTPS GDIE A+ A +GS T VHVLIRPRPGDFVYS EK+ VM KDV+AA+KAGAHGVVIG A+ +CSITFHRAFDCC T+ AA+E+L+RL GVDRVLTSGR ESAW GR I+RLVEA GRI ++PGAG++ NVKQLL+HTGAKEVHVGS C E +P + R+ ++V +G EG +A ++RVS V E+L +A
Sbjct: 4 IVPDGKGTVDVVLECCLEGVESASQARSGGAHRIELCANLAQGGVTPSAGDIEGALLAVRGSHTRVHVLIRPRPGDFVYSVLEKQ-------VMEKDVSAAVKAGAHGVVIGVAKAXXXXXXXXXAKD-----------ACSITFHRAFDCCTTDEVAAMESLVRL-GVDRVLTSGRHESAWDGRAVISRLVEASGGRIGILPGAGVTHGNVKQLLLHTGAKEVHVGSACQEKVPRTALREDATVCVGLVGEGSAAAGLKRVSAGRVCEMLTIIA 259
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A835YMB7_9STRA (Copper homeostasis protein cutC homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB7_9STRA) HSP 1 Score: 182 bits (462), Expect = 2.580e-51 Identity = 116/268 (43.28%), Postives = 147/268 (54.85%), Query Frame = 2
Query: 71 SVKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTA---VHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVAR------ATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIPWGSPRQSSVSLGPSEGPSAVIRRVSRRLVSEIL 847
+V LE C+EG+E A+ A G HR+ELCA L +GG TPS+G +EE ++ VHVL+RPRPG F YS E +A +DV A AGAHGV +GAL E G ID A ++ +A+ A P ++TFHRAFD C+T A AL L GVD VLTSGRA +AW GR I +V +G VI AG+S +NV +L+ TGA+ VHVGS E + +P V RRVSR EIL
Sbjct: 2 TVLLEACVEGVEGAVAAAAAGVHRIELCAGLLEGGTTPSLGTVEEVIACLSEQHLTRCKVHVLVRPRPGSFCYSAAEARAAL-------RDVRAMRHAGAHGVAVGALREDGSIDTHALASIVALAKDDMQGAAGECPPPMAVTFHRAFDACSTPALQALAQLAER-GVDGVLTSGRAATAWEGRHVIRDMVRSGVAGTTVIAAAGVSASNVARLMQATGAEAVHVGSAILEALEEAAPLGMGVQ-----------RRVSRDKCGEIL 250
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A2E3A543_9BACT (PF03932 family protein CutC n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A543_9BACT) HSP 1 Score: 176 bits (447), Expect = 3.480e-49 Identity = 118/264 (44.70%), Postives = 155/264 (58.71%), Query Frame = 2
Query: 74 VKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIPWGSPRQSSVSLGP--SEGPSAVIRRVSRRLVSEILNTLA 859
+ LECC+ ESA+ A +GGA R+ELCA L GGVTP+ G I+ A G + VLIRPR GDF Y+ E F VM +D+ A + GA G+V+G L E G ID + TAELI A SITFHR+FD A + ALETL L GVDR+LTSGRA A G + +++L +A GR+V++PG GI+ N ++++ TGA E+HVGS + R+S+V LGP SE P A+I V +L LA
Sbjct: 4 ILLECCVGTXESAVNAERGGAARVELCAALELGGVTPAYGSIKLARDRI---GIPLFVLIRPRGGDFHYTPLE-------FEVMKEDIVTARELGADGIVLGVLHEDGNIDTQRTAELIETADGA------SITFHRSFDS-APDPLTALETLCEL-GVDRILTSGRAPRAADGIEMLSQLQQAAAGRLVILPGGGINHDNCRRIIEMTGAGEIHVGSALSSPCIGPNQRESAVGLGPGGSETP-AMIGETDPDAVKRLLEILA 248
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A2E8H155_9BACT (PF03932 family protein CutC n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A2E8H155_9BACT) HSP 1 Score: 175 bits (444), Expect = 1.050e-48 Identity = 106/212 (50.00%), Postives = 135/212 (63.68%), Query Frame = 2
Query: 83 ECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVH 718
E C++G+ AI A GGAHR+ELC LS GG TPS+G + ++ VHVLIRPR GDF + E F+VM +D+ AA ++GA GVVIG+L GG D E TA L+ AR S+TFHRAFD +A AALE L+ L G+DRVLTSG+A SAW GR + LV+A GRIV++PGAGI T+V +L+ TG +EVH
Sbjct: 9 EVCVDGVTGAIAAQSGGAHRLELCQTLSVGGTTPSVGLMRSTKASVD---LPVHVLIRPRAGDFHFDTAE-------FDVMRRDIEAAGESGAEGVVIGSLETDGGPDVERTARLVEDARPM------SVTFHRAFDV-VPDADAALEGLIGL-GIDRVLTSGQASSAWEGRGLLRHLVDAAGGRIVIMPGAGIDETHVGELIHETGVQEVH 202
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A1Q7DP79_9BACT (PF03932 family protein CutC n=2 Tax=unclassified Gemmatimonadetes TaxID=234665 RepID=A0A1Q7DP79_9BACT) HSP 1 Score: 171 bits (432), Expect = 6.580e-47 Identity = 108/214 (50.47%), Postives = 133/214 (62.15%), Query Frame = 2
Query: 80 LECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHV 721
+E C++ IESA+ A GGAHR+ELCANL +GG TPS G + AV A+ + VLIRPR GDF+YS E VM +D+ A +AGAHGVV G L GGID++ ELI AR +TFHRAFD C +A AALETL+ L GVDRVLTSG+A +A G TI RLV GRI ++PG GI+ N L+ TG EVH+
Sbjct: 7 VEACVDSIESALAAAAGGAHRIELCANLVEGGTTPSAGTL--AVCRAR-LDIPIFVLIRPRGGDFLYSAPE-------LAVMMEDIRRAKQAGAHGVVTGVLRADGGIDEDRARELIAAARPL------QVTFHRAFDVCR-DAAAALETLITL-GVDRVLTSGQAATAPEGAQTIARLVRQAAGRIGILPGGGITAENAAALVQATGVTEVHL 202
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A8J3QX66_9ACTN (PF03932 family protein CutC n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QX66_9ACTN) HSP 1 Score: 169 bits (427), Expect = 2.930e-46 Identity = 103/212 (48.58%), Postives = 130/212 (61.32%), Query Frame = 2
Query: 83 ECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVH 718
E C++ ++A+ A QGGA R+ELCA L GG+TPSIG IE AVS+ + VHV++RPR GDF+YS RE M +DV AA+ AGAHG+VIGAL +G ID E T LI A SITFHRAFD + AALE L+ L GVDRVLTSG+ S G I LV+ RIVV+ G G++ N+ ++L TG E+H
Sbjct: 5 EICIDSADAAVAAEQGGADRVELCAALFDGGLTPSIGTIETAVSSVRR--IRVHVIVRPRGGDFIYSSRE-------IETMVRDVRAAVAAGAHGIVIGALTPEGDIDVETTRRLIEAAG------DASITFHRAFDM-VRDPYAALEQLIEL-GVDRVLTSGQESSVLEGAPLIAELVKRAGDRIVVMAGGGVNERNIARILAETGVHELH 199
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A1Q8AJ90_9BACT (PF03932 family protein CutC n=2 Tax=FCB group TaxID=1783270 RepID=A0A1Q8AJ90_9BACT) HSP 1 Score: 169 bits (427), Expect = 3.690e-46 Identity = 105/216 (48.61%), Postives = 132/216 (61.11%), Query Frame = 2
Query: 74 VKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHV 721
V +E C++ IESA+ A GGAHR+ELCANL +GG TPS G + + + + VL+RPR GDF+YS E VM +D+ A AGAHG V+G L G ID E T +LI AR +TFHRAFD C +A ALETL+ L GV+RVLTSG+A +A G DTI RLV GRI V+PG GI+ NV+ L+ TG EVH+
Sbjct: 5 VLVEACVDSIESALAAAAGGAHRIELCANLVEGGTTPSAGTLALCRTRLR---IPIFVLVRPRGGDFLYSAAE-------LAVMLEDIRRAKDAGAHGAVVGVLRADGAIDVERTRQLIAAARPL------QVTFHRAFDVCR-DAGEALETLIGL-GVERVLTSGQAATAPQGADTIARLVRRAAGRIGVLPGGGITADNVEALVRSTGVAEVHL 202
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A4R5BDC2_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura rubrisoli TaxID=2530368 RepID=A0A4R5BDC2_9ACTN) HSP 1 Score: 167 bits (423), Expect = 1.170e-45 Identity = 104/226 (46.02%), Postives = 138/226 (61.06%), Query Frame = 2
Query: 71 SVKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIP 748
S+ E C++ + AI A + GAHR+ELCA L +GG+TP++G + A++A S VHV+IRPR GDF++ E A M DV A +AGAHGVVIGAL +GGID+ +T LI AA +TFHRAFD A + AALETL+ L GVDRVLTSG+ S G I LVE RIVV+PG G++ N+ +++ TGA+E+H + E P
Sbjct: 2 SLTYEICIDSVAGAIAAEKAGAHRVELCAALFEGGLTPTLGTVRAALAAV--SSIRVHVIIRPRGGDFIFDGHEVAA-------MEHDVVLAREAGAHGVVIGALTAEGGIDRPVTERLI------AAADGLPVTFHRAFDMAA-DPFAALETLVDL-GVDRVLTSGQDVSVLEGAPLIAELVERAGDRIVVMPGGGVTGRNIARIVQATGAREIHFAALSDEPSP 210
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: A0A8I0B4B3_9BACT (PF03932 family protein CutC n=1 Tax=Alloprevotella sp. Lung230 TaxID=2766595 RepID=A0A8I0B4B3_9BACT) HSP 1 Score: 167 bits (423), Expect = 1.210e-45 Identity = 114/263 (43.35%), Postives = 151/263 (57.41%), Query Frame = 2
Query: 80 LECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIPWGSP---RQSSVSLGPSEGPSAVIRRVSRRLVSEILNTLA 859
LE C +ESA A+ GGA R+ELCA L +GG+TPS G + AV+ KG G HVLIRPR GDF+YS+ E N+M +D+A + G GVV+GALL G ID L+ AA S+TFHRAFD C + AALE L+ L GV+RVLTSG A +AWAGRDT+ LVE GRI ++PGAG++ N +L TGA E+H +P S +Q V++G ++ + S V +L ++
Sbjct: 4 LEVCCGTLESAQNALAGGAGRIELCAALDEGGLTPSYG-LMHAVAHLKGIGK--HVLIRPRGGDFLYSEAE-------VNLMLEDIALVRRLGLDGVVVGALLPDGDIDVPTMRRLM------AAAGDLSVTFHRAFDLCRDKG-AALERLVEL-GVNRVLTSGGAPTAWAGRDTLRHLVEQAAGRIGILPGAGVTPENAADILRATGACEIHASL----RVPLRSKMRYQQQGVTMGAADRDEFERKETSTEKVEALLKEIS 244
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Match: W2F0C2_9ACTN (PF03932 family protein CutC n=3 Tax=Microbispora TaxID=2005 RepID=W2F0C2_9ACTN) HSP 1 Score: 167 bits (423), Expect = 1.210e-45 Identity = 113/260 (43.46%), Postives = 153/260 (58.85%), Query Frame = 2
Query: 71 SVKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDIEEAVSAAKGSGTAVHVLIRPRPGDFVYSQREKKARCENFNVMAKDVAAALKAGAHGVVIGALLEKGGIDKEITAELIRVARATAAPCSCSITFHRAFDCCATEATAALETLMRLLGVDRVLTSGRAESAWAGRDTITRLVEAGQGRIVVIPGAGISRTNVKQLLIHTGAKEVHVGSGCHENIPWGSPRQSSVSLGPSEGPSAVIRRV-SRRLVSEIL 847
S+ E C++ A+ A Q GA R+ELCA L +GG+TP++G +E ++A S VHV+IRPR GDFV+ + E +A M +DV A +AGAHGVVIGAL +G +D+E+ LI A S+TFHRAFD A + AALETL+ L GVDRVLTSG+ +A G I LVE R+VV+PG GI+ N +++ TGA+E+H + E P R +G S +RRV S LVSE++
Sbjct: 2 SLTYEICIDSTAGAVAAEQAGAQRVELCAALFEGGLTPTLGTVEATLAAV--SSIRVHVIIRPRGGDFVFDRYEIEA-------MERDVEAVREAGAHGVVIGALTPQGEVDEEVAKRLIGAAEGL------SVTFHRAFDMAA-DPFAALETLVAL-GVDRVLTSGQDSTALEGAPLIASLVERAGDRLVVMPGGGITPRNAGRVVEATGAREIHFAALVDEPSPVVH-RNPYPYMGGELRQSEFVRRVTSGALVSEVI 243 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig80.19372.1 >prot_F-serratus_M_contig80.19372.1 ID=prot_F-serratus_M_contig80.19372.1|Name=mRNA_F-serratus_M_contig80.19372.1|organism=Fucus serratus male|type=polypeptide|length=272bp MEQATNSESVKLECCLEGIESAIQAVQGGAHRMELCANLSQGGVTPSIGDback to top mRNA from alignment at F-serratus_M_contig80:330025..339207- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig80.19372.1 ID=mRNA_F-serratus_M_contig80.19372.1|Name=mRNA_F-serratus_M_contig80.19372.1|organism=Fucus serratus male|type=mRNA|length=9183bp|location=Sequence derived from alignment at F-serratus_M_contig80:330025..339207- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig80:330025..339207- >mRNA_F-serratus_M_contig80.19372.1 ID=mRNA_F-serratus_M_contig80.19372.1|Name=mRNA_F-serratus_M_contig80.19372.1|organism=Fucus serratus male|type=CDS|length=1632bp|location=Sequence derived from alignment at F-serratus_M_contig80:330025..339207- (Fucus serratus male)back to top |