mRNA_F-serratus_M_contig80.19361.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig80.19361.1
Unique NamemRNA_F-serratus_M_contig80.19361.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: D8LQ53_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ53_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 5.140e-71
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 2
Query:    5 EGQVLKVLASTKSSTCESC-KGARQGDLLEIEYTGRLQDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVNMCV 406
            E QV+K+L S KS+ C SC +GAR+GDLLEIEYT +L+DGKVFDGSSIKVNGREVVGR GD +LFFVLGKQP+GQFPPGWDL+L GMC GE+R+ISVPPLLGYG QG+P+RGVP N+TLLYDVKL+GVNGVNMCV
Sbjct:  219 EEQVVKLLNSDKSAECNSCGQGARRGDLLEIEYTAKLEDGKVFDGSSIKVNGREVVGRAGDTTLFFVLGKQPKGQFPPGWDLLLIGMCVGETRLISVPPLLGYGAQGMPKRGVPANATLLYDVKLIGVNGVNMCV 353          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A7S2WCX0_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCX0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.740e-45
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = 2
Query:   62 KGARQGDLLEIEYTGRLQDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNG 391
            +GA +GDLLEI Y  RL+DGK+ DG+SI ++G+ + GRGGD S+FFVLG+QPRGQFPPGWD+ L GMC GE+R I+VPP+L YG++G+PRRG+PPNS ++Y V L+  NG
Sbjct:  188 EGAARGDLLEITYEARLKDGKLVDGASISIDGQSLAGRGGDSSIFFVLGQQPRGQFPPGWDVSLIGMCVGEAREITVPPVLAYGSKGIPRRGIPPNSEIVYKVVLLSRNG 297          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A7S0BXT3_9STRA (Peptidylprolyl isomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BXT3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.050e-43
Identity = 68/126 (53.97%), Postives = 91/126 (72.22%), Query Frame = 2
Query:   20 KVLASTKSSTCESCKGARQGDLLEIEYTGRL-QDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGV 394
            K+  S   +     +GA  GDL+EI Y G + + G VFDGS+IK+NG  V GRGGDI++FFVL KQP  QFPPGW++ +  MC GE R I VPP+L YG++G+PRRG+PP++TL YDV L+ +NG+
Sbjct:   26 KITVSQLKAPILCTQGAETGDLIEISYVGTVVETGAVFDGSTIKINGEAVPGRGGDITIFFVLNKQPFNQFPPGWNVGMESMCIGERRRILVPPVLAYGSKGVPRRGIPPDATLQYDVTLISINGL 151          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A7S2JVG9_9STRA (Peptidylprolyl isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVG9_9STRA)

HSP 1 Score: 149 bits (376), Expect = 7.820e-43
Identity = 68/132 (51.52%), Postives = 93/132 (70.45%), Query Frame = 2
Query:    2 EEGQVLKVLASTKSSTCESCKGARQGDLLEIEYTGRL-QDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGV 394
            +E Q   V      + C   +GAR  DLLEI Y G + + G +FDGS+I ++G+ + GRG D+SLFFVLGKQP GQFPPGWD+ L GMC GE R + +PP+L YG+ G+PRR +PP++TL YD+ L+ +NG+
Sbjct:   48 QEDQRFSVTQLKAPTMCN--RGARTDDLLEISYVGSVVETGTIFDGSAITIDGKGIPGRGNDVSLFFVLGKQPFGQFPPGWDVGLEGMCVGERRRVVIPPVLAYGSVGVPRRNIPPDATLQYDITLISINGL 177          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A835ZH12_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH12_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.210e-42
Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 2
Query:    5 EGQVLKVLASTKSSTCESCKGARQGDLLEIEYTGRLQ-DGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVNMC 403
            + Q L V    ++  C +C GA +GDLLEI YT RL   G VFD S     GR   GRGGD + +FVLG+QPRGQFPPGWDL L GMC GE R ++VPP LGYG +G PRRGVP  + L+Y+V+LV VN V +C
Sbjct:  209 DDQSLAVRTMRRADACRACAGAARGDLLEIRYTARLAATGAVFDAS-----GRGAPGRGGDATFYFVLGEQPRGQFPPGWDLGLLGMCVGEVREVAVPPALGYGARGAPRRGVPGGAALVYEVELVSVNSVALC 337          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A8J9RYM0_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RYM0_PHATR)

HSP 1 Score: 145 bits (366), Expect = 6.750e-42
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 2
Query:   59 CK-GARQGDLLEIEYTGRL-QDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNG 391
            CK GA   DLLEI Y G + + G+VFDGS+IK++G  + GRG D+SL+FVLGKQP GQFPPGWD+ + G C GE R + +PP L YG++G+PRRG+PP++TL YD+ LV +NG
Sbjct:   20 CKRGATTDDLLEISYRGSVVETGQVFDGSAIKIDGGGIPGRGDDVSLYFVLGKQPFGQFPPGWDVGMVGQCVGERRRLIIPPALAYGSKGVPRRGIPPDATLQYDITLVSLNG 132          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A6V1NQ85_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQ85_HETAK)

HSP 1 Score: 151 bits (382), Expect = 9.020e-42
Identity = 70/118 (59.32%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   65 GARQGDLLEIEYTGRLQDG------KVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVNM 400
            GA  GDLLEI Y G L DG      +VFDGS++KVNGREV GRGGD ++FFVLGKQP GQFPP WD+ + GMC GE R +++PP LG+G   L RRG+P  STL+YDV + G+NG ++
Sbjct:  234 GAEYGDLLEIGYVGYLADGPDGGPGRVFDGSAVKVNGREVSGRGGDTTVFFVLGKQPTGQFPPAWDVGMLGMCVGEKRRLTIPPALGFGEASLKRRGIPAGSTLIYDVMVNGINGQSL 351          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A448Z0S4_9STRA (Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0S4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.290e-41
Identity = 66/112 (58.93%), Postives = 89/112 (79.46%), Query Frame = 2
Query:   62 KGARQGDLLEIEYTGRLQD-GKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGV 394
            +GA + DLLEI Y G++ + G +FDGS++++NG  + GRG D+S+FFVLGKQP GQFPPGWD  L G+C GE R + VPP+L YG++GLPRRG+PP++TL YDV LV +NG+
Sbjct:  305 RGATEDDLLEISYVGKVAETGAIFDGSAVRINGEGIAGRGNDVSIFFVLGKQPFGQFPPGWDAGLEGICVGERRRLLVPPVLAYGSKGLPRRGIPPDATLQYDVTLVSLNGL 416          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A1Z5JK25_FISSO (Peptidylprolyl isomerase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JK25_FISSO)

HSP 1 Score: 150 bits (379), Expect = 2.360e-41
Identity = 67/113 (59.29%), Postives = 88/113 (77.88%), Query Frame = 2
Query:   62 KGARQGDLLEIEYTGRL-QDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVN 397
            +GA+  DLLEI Y G + + G +FDGS++K+NG+ + GRG D+SLFFVLGKQP GQFPPGWD+ L G C GE R + +PP L YG+ GLPRRG+PP++TL YDV LV +NG++
Sbjct:  235 RGAQVDDLLEISYIGTVVETGAIFDGSAVKINGQGIPGRGDDVSLFFVLGKQPFGQFPPGWDVGLVGCCVGERRRLLIPPALAYGSTGLPRRGIPPDATLQYDVTLVSLNGLS 347          
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Match: A0A1E7FEA6_9STRA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEA6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.650e-41
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 2
Query:   59 CK-GARQGDLLEIEYTGRL-QDGKVFDGSSIKVNGREVVGRGGDISLFFVLGKQPRGQFPPGWDLMLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVNM 400
            CK G+   DL+EI Y GR+ + G +FDGS+I V+G  + GRG D+S+ FVLGKQP GQFPPGWD+ LT MC GE R I VPP+L YG +GLPRRG+P  +TL YDV LV +NG+ M
Sbjct:   19 CKRGSTLDDLMEISYIGRVVETGNIFDGSAIMVDGEGIPGRGNDVSISFVLGKQPFGQFPPGWDVGLTDMCVGERRRILVPPVLAYGEKGLPRRGIPSQATLQYDVTLVSLNGLAM 134          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig80.19361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ53_ECTSI5.140e-7178.52Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2WCX0_9STRA2.740e-4562.73Peptidylprolyl isomerase n=1 Tax=Rhizochromulina m... [more]
A0A7S0BXT3_9STRA5.050e-4353.97Peptidylprolyl isomerase n=1 Tax=Proboscia inermis... [more]
A0A7S2JVG9_9STRA7.820e-4351.52Peptidylprolyl isomerase n=1 Tax=Leptocylindrus da... [more]
A0A835ZH12_9STRA1.210e-4255.97Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A8J9RYM0_PHATR6.750e-4258.41Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A6V1NQ85_HETAK9.020e-4259.32Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A448Z0S4_9STRA1.290e-4158.93Peptidylprolyl isomerase n=1 Tax=Pseudo-nitzschia ... [more]
A0A1Z5JK25_FISSO2.360e-4159.29Peptidylprolyl isomerase n=2 Tax=Fistulifera solar... [more]
A0A1E7FEA6_9STRA2.650e-4159.48Peptidylprolyl isomerase (Fragment) n=1 Tax=Fragil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig80contigF-serratus_M_contig80:62847..63924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D8LQ53
KEGG koko:K09569
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048856,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0545@1,KOG0549@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons2
Model size481
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig80.19361.1prot_F-serratus_M_contig80.19361.1Fucus serratus malepolypeptideF-serratus_M_contig80 62916..63080 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.7936735-UTR-F-serratus_M_contig80:62846..629151622932386.7936735-UTR-F-serratus_M_contig80:62846..62915Fucus serratus maleUTRF-serratus_M_contig80 62847..62915 -
1690964283.513156-UTR-F-serratus_M_contig80:62846..629151690964283.513156-UTR-F-serratus_M_contig80:62846..62915Fucus serratus maleUTRF-serratus_M_contig80 62847..62915 -
1622932386.8262446-UTR-F-serratus_M_contig80:63080..631791622932386.8262446-UTR-F-serratus_M_contig80:63080..63179Fucus serratus maleUTRF-serratus_M_contig80 63081..63179 -
1690964283.5409706-UTR-F-serratus_M_contig80:63080..631791690964283.5409706-UTR-F-serratus_M_contig80:63080..63179Fucus serratus maleUTRF-serratus_M_contig80 63081..63179 -
1622932386.8733008-UTR-F-serratus_M_contig80:63776..639241622932386.8733008-UTR-F-serratus_M_contig80:63776..63924Fucus serratus maleUTRF-serratus_M_contig80 63777..63924 -
1690964283.5533895-UTR-F-serratus_M_contig80:63776..639241690964283.5533895-UTR-F-serratus_M_contig80:63776..63924Fucus serratus maleUTRF-serratus_M_contig80 63777..63924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932386.8095925-CDS-F-serratus_M_contig80:62915..630801622932386.8095925-CDS-F-serratus_M_contig80:62915..63080Fucus serratus maleCDSF-serratus_M_contig80 62916..63080 -
1690964283.525154-CDS-F-serratus_M_contig80:62915..630801690964283.525154-CDS-F-serratus_M_contig80:62915..63080Fucus serratus maleCDSF-serratus_M_contig80 62916..63080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig80.19361.1

>prot_F-serratus_M_contig80.19361.1 ID=prot_F-serratus_M_contig80.19361.1|Name=mRNA_F-serratus_M_contig80.19361.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MLTGMCAGESRMISVPPLLGYGTQGLPRRGVPPNSTLLYDVKLVGVNGVN
MCVP*
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mRNA from alignment at F-serratus_M_contig80:62847..63924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig80.19361.1 ID=mRNA_F-serratus_M_contig80.19361.1|Name=mRNA_F-serratus_M_contig80.19361.1|organism=Fucus serratus male|type=mRNA|length=1078bp|location=Sequence derived from alignment at F-serratus_M_contig80:62847..63924- (Fucus serratus male)
GGAAGAGGGCCAGGTGCTAAAGGTTTTGGCCAGCACGAAGAGCTCGACGT GCGAGAGCTGCAAGGGGGCGAGACAGGGGGATCTGCTGGAGATCGAATAC ACGGGGCGGTTGCAGGACGGGAAGGTGTTCGACGGGTCCAGCATCAAGGT CAGCCGCTTTCCCCGGCACAACGCCGATGCGACGTTGCGGTGTCTCTTTT TTTACAAGGCCCAAGACTTGGGTACTCAGTTGGGGGCTGTGTACGTGCAG GTTCCTCCGTCGAACGAACTTTGAGATCACGTCGCTCTGTGAGGAGGCGC CATAGACGACACTTTGACACGGTACACGGTACCTGCGCGTTTGAATTGAT ATCTTGAATAATGTGTGATCGTTTTGCCCCCTGTGCGGCTCTGATGCCGT GGGGTTCACTATCTTTCGTGGGCGATGCGGAGGTATCAGAAAAACTGTAC CTGATCAGTAGTTACAGCTGATGCTTGTTCCGCTCGTTGGCGTACGATGG CCTATTTCCAAGCGAGGTCTGCTCCCCCCGCGTGGGGCGCAGCACATTAT ATATACTGTACCAAGTACAATATTAATTTAAGTAGCATGAATGTTATTAA GGGATCCCGTCTCGTATCAAGACAGATACCCACATGAAACGCCTCCCAAA GGTGACTGTAAAGACACGTAGTTTCGCGAGCAGATGCTTTGAGCTTTGCA CTCACACGCCTTACTGATTGCAAGCGCCCCCCGTCGTTCTCTCAGGTAAA CGGCCGAGAGGTCGTCGGTCGTGGCGGGGATATATCGCTGTTCTTCGTGC TGGGGAAGCAACCCAGGGGACAGTTCCCGCCGGGCTGGGATCTCATGCTT ACGGGCATGTGCGCCGGAGAGAGCAGGATGATCAGCGTGCCCCCGCTGTT GGGATACGGGACTCAGGGTCTGCCTCGTAGAGGGGTACCTCCAAACTCGA CGCTCCTGTACGATGTTAAATTGGTCGGAGTCAACGGTGTTAATATGTGT GTGCCCTAAGCTGGTGGACGTTGCTTCGAGATGGAATTAAGTTAGTATCG ACATAAGAACCACTCCGCGCTGGATCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig80:62847..63924-

>mRNA_F-serratus_M_contig80.19361.1 ID=mRNA_F-serratus_M_contig80.19361.1|Name=mRNA_F-serratus_M_contig80.19361.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig80:62847..63924- (Fucus serratus male)
ATGCTTACGGGCATGTGCGCCGGAGAGAGCAGGATGATCAGCGTGCCCCC
GCTGTTGGGATACGGGACTCAGGGTCTGCCTCGTAGAGGGGTACCTCCAA
ACTCGACGCTCCTGTACGATGTTAAATTGGTCGGAGTCAACGGTGTTAAT
ATGTGTGTGCCCTAAATGCTTACGGGCATGTGCGCCGGAGAGAGCAGGAT
GATCAGCGTGCCCCCGCTGTTGGGATACGGGACTCAGGGTCTGCCTCGTA
GAGGGGTACCTCCAAACTCGACGCTCCTGTACGATGTTAAATTGGTCGGA
GTCAACGGTGTTAATATGTGTGTGCCCTAA
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