mRNA_F-serratus_M_contig8.19333.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig8.19333.1
Unique Name	mRNA_F-serratus_M_contig8.19333.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.550e-24
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL EVV   L L+++  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct:   77 RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 205

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.290e-24
Identity = 48/129 (37.21%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L+++  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct:   72 RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 200

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.410e-24
Identity = 46/129 (35.66%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + + L+++  FM P + +  + +FEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct:   88 RRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSF 216

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.410e-24
Identity = 48/129 (37.21%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L+++  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct:  117 RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 245

[Close]

BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.940e-23
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW S  Q+     T+E+EY AL +VV + L L+++  FM P + I  + +FEDN+GA++LA N  ++ ++KHID++HH +R+  +  +  +MH+ +  Q  D  T  L    F
Sbjct:  153 RRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAF 281

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.510e-22
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L++V  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  +V ++H+ +  Q  D  T  L    F
Sbjct: 1433 RRSVSGGIVTCGGGVVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQVWRFMLPKVSMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEVSVIHVPSPYQRADFLTKSLPKDAF 1561

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.980e-22
Identity = 47/124 (37.90%), Postives = 78/124 (62.90%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPL 384
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L+++  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L
Sbjct:  172 RRSVSGGIVTCGGGAVSWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 295

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BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.220e-22
Identity = 48/129 (37.21%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L+++  FM P + +  + VFEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct:  323 RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAF 451

[Close]

BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.780e-22
Identity = 47/129 (36.43%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF 399
            R S+SG IV    G +SW SR Q+     T+E+EY AL +VV + L L+++  FM P + +  + +FEDN+GA++LA N  ++ ++KHID++HH +R+  +  ++ ++H+ +  Q  D  T  L    F
Sbjct: 1153 RRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAF 1281

[Close]

BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.640e-22
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = 1

Query:   13 RHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKALLLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLMRDAWDAGKVGLMHIKAEKQPQDLFTNPL 384
            R S+SGA+V++A   ++W S  Q+  +  TSE+EY A+ + V ++L +  +  F++P +    +DV EDNEGA+ LA N  +S  +KHID++HH +R+  + G + + H+ +EKQ  D+ T  L
Sbjct:  100 RRSVSGALVIVAACLVAWLSWTQKCVSQSTSEAEYLAMGDGVKESLFVNGMLQFLRPSVEPRKIDVLEDNEGAIALAENPLSSCRSKHIDVRHHFLRNLTEEGVIEITHVPSEKQHADILTKAL 223

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig8.19333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KEZ8_9PHAE	3.550e-24	37.98	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUW6_9PHAE	6.290e-24	37.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KIJ7_9PHAE	6.410e-24	35.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWJ4_9PHAE	8.410e-24	37.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KSZ5_9PHAE	8.940e-23	37.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4U5_9PHAE	1.510e-22	38.76	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K6X8_9PHAE	1.980e-22	37.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG2_9PHAE	2.220e-22	37.21	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JG40_9PHAE	2.780e-22	36.43	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6H5J8M4_9PHAE	3.640e-22	37.90	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig8	contig	F-serratus_M_contig8:940987..941385 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Opisthokonta
Seed ortholog score	89.4
Seed ortholog evalue	1.4e-15
Seed eggNOG ortholog	400682.PAC_15698969
Hectar predicted targeting category	other localisation
EggNOG free text desc.	transposition, RNA-mediated
EggNOG OGs	3A8FB@33154,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Opisthokonta
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	399
Cds size	399
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932379.493202-CDS-F-serratus_M_contig8:940986..941385	1622932379.493202-CDS-F-serratus_M_contig8:940986..941385	Fucus serratus male	CDS	F-serratus_M_contig8 940987..941385 +
1690964279.6287239-CDS-F-serratus_M_contig8:940986..941385	1690964279.6287239-CDS-F-serratus_M_contig8:940986..941385	Fucus serratus male	CDS	F-serratus_M_contig8 940987..941385 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig8.19333.1	prot_F-serratus_M_contig8.19333.1	Fucus serratus male	polypeptide	F-serratus_M_contig8 940987..941385 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig8:940987..941385+
coding sequence from alignment at F-serratus_M_contig8:940987..941385+

protein sequence of mRNA_F-serratus_M_contig8.19333.1

>prot_F-serratus_M_contig8.19333.1 ID=prot_F-serratus_M_contig8.19333.1|Name=mRNA_F-serratus_M_contig8.19333.1|organism=Fucus serratus male|type=polypeptide|length=133bp
ELDTRHSLSGAIVMLAKGEISWHSRMQEVTASGTSESEYAALSEVVTKAL
LLKRVQDFMKPLIMIGAVDVFEDNEGAMKLAVNKHASRSTKHIDMKHHLM
RDAWDAGKVGLMHIKAEKQPQDLFTNPLGMQKF

mRNA from alignment at F-serratus_M_contig8:940987..941385+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig8.19333.1 ID=mRNA_F-serratus_M_contig8.19333.1|Name=mRNA_F-serratus_M_contig8.19333.1|organism=Fucus serratus male|type=mRNA|length=399bp|location=Sequence derived from alignment at F-serratus_M_contig8:940987..941385+ (Fucus serratus male)
GAGCTGGATACTAGACACTCATTGTCGGGTGCGATTGTAATGTTGGCAAA
GGGCGAGATCAGCTGGCACTCGAGGATGCAAGAAGTGACGGCGTCGGGTA
CCTCAGAGTCGGAGTACGCTGCCTTATCAGAGGTGGTAACGAAAGCTTTA
CTTTTGAAGCGAGTGCAGGATTTCATGAAACCGTTGATAATGATCGGCGC
AGTGGACGTATTCGAGGACAACGAAGGGGCCATGAAGCTCGCAGTAAATA
AACACGCTAGCCGTAGTACCAAACACATTGATATGAAACATCATCTGATG
AGGGATGCGTGGGACGCGGGGAAGGTTGGACTAATGCATATCAAGGCGGA
AAAGCAACCCCAGGACTTGTTCACCAACCCACTGGGCATGCAGAAGTTT

Coding sequence (CDS) from alignment at F-serratus_M_contig8:940987..941385+

>mRNA_F-serratus_M_contig8.19333.1 ID=mRNA_F-serratus_M_contig8.19333.1|Name=mRNA_F-serratus_M_contig8.19333.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig8:940987..941385+ (Fucus serratus male)
GAGCTGGATACTAGACACTCATTGTCGGGTGCGATTGTAATGTTGGCAAA
GGGCGAGATCAGCTGGCACTCGAGGATGCAAGAAGTGACGGCGTCGGGTA
CCTCAGAGTCGGAGTACGCTGCCTTATCAGAGGTGGTAACGAAAGCTTTA
CTTTTGAAGCGAGTGCAGGATTTCATGAAACCGTTGATAATGATCGGCGC
AGTGGACGTATTCGAGGACAACGAAGGGGCCATGAAGCTCGCAGTAAATA
AACACGCTAGCCGTAGTACCAAACACATTGATATGAAACATCATCTGATG
AGGGATGCGTGGGACGCGGGGAAGGTTGGACTAATGCATATCAAGGCGGA
AAAGCAACCCCAGGACTTGTTCACCAACCCACTGGGCATGCAGAAGTTTG
AGCTGGATACTAGACACTCATTGTCGGGTGCGATTGTAATGTTGGCAAAG
GGCGAGATCAGCTGGCACTCGAGGATGCAAGAAGTGACGGCGTCGGGTAC
CTCAGAGTCGGAGTACGCTGCCTTATCAGAGGTGGTAACGAAAGCTTTAC
TTTTGAAGCGAGTGCAGGATTTCATGAAACCGTTGATAATGATCGGCGCA
GTGGACGTATTCGAGGACAACGAAGGGGCCATGAAGCTCGCAGTAAATAA
ACACGCTAGCCGTAGTACCAAACACATTGATATGAAACATCATCTGATGA
GGGATGCGTGGGACGCGGGGAAGGTTGGACTAATGCATATCAAGGCGGAA
AAGCAACCCCAGGACTTGTTCACCAACCCACTGGGCATGCAGAAGTTT