mRNA_F-serratus_M_contig8.19299.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19299.1
Unique NamemRNA_F-serratus_M_contig8.19299.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig8.19299.1 vs. uniprot
Match: A0A6H5JA04_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA04_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.090e-70
Identity = 143/209 (68.42%), Postives = 165/209 (78.95%), Query Frame = 1 
Query:   70 GGVDAGASSSDMLLADALKRARSAEAAQEGSRRRVETLLEAAERSEKDALQLKMVIKFRDGTIAAQRKKNADQERVNLAEENAHLRKQLEAGVGESSEVSKWRLQCKEAEARLVELMGDQTGDAKRLVWGVADEERFQGDLDEKVLKLMEENRQLKEEAESFEERLXXXXXXXXXXXXXXENRAEFEAKKIVENALLSKLKGAEGRVEE 696
            GGVDAGAS  + LL +AL+RAR+AE AQ G+ RRVE+LL A E+ EKDALQLKM+IKFRDGTIAAQRKK++DQER  +A+ENAHL KQLE GV ES+EVSKWRLQCKEAEARL EL GD +GD KRLVWGV DEERF+G+LDEKVL L+EE RQL + A+ FEERL               NRAE EAKKIVENALLSKL+ A+ + EE
Sbjct:  497 GGVDAGAS--EELLVNALRRARAAEKAQAGASRRVESLLAAVEKGEKDALQLKMIIKFRDGTIAAQRKKDSDQERAAMADENAHLLKQLEGGVNESAEVSKWRLQCKEAEARLAELTGDNSGDVKRLVWGVGDEERFRGELDEKVLSLVEEKRQLTDAADEFEERLRHESRKAEKRRMSAANRAELEAKKIVENALLSKLQEAQRQAEE 703
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA04_9PHAE1.090e-7068.42Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:482559..484641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.5
Seed ortholog evalue3.9e-61
Seed eggNOG ortholog2880.D8LRJ7
KEGG koko:K04543,ko:K04546,ko:K10400,ko:K10402,ko:K11498
KEGG Pathwayko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04926,ko05032,ko05034,ko05167,ko05200,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04926,map05032,map05034,map05167,map05200
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001667,GO:0001700,GO:0002009,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003676,GO:0003677,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005834,GO:0005856,GO:0005871,GO:0005873,GO:0005875,GO:0005886,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007369,GO:0007391,GO:0007398,GO:0007399,GO:0007405,GO:0007498,GO:0007507,GO:0007584,GO:0007610,GO:0007635,GO:0007637,GO:0008104,GO:0008150,GO:0008283,GO:0008356,GO:0008574,GO:0009524,GO:0009555,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009898,GO:0009987,GO:0009991,GO:0010470,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017145,GO:0019882,GO:0019884,GO:0019886,GO:0019897,GO:0019898,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022610,GO:0023052,GO:0030010,GO:0030154,GO:0030952,GO:0031234,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033206,GO:0035050,GO:0035295,GO:0036445,GO:0040011,GO:0042074,GO:0042221,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043519,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0045176,GO:0045995,GO:0048002,GO:0048103,GO:0048193,GO:0048229,GO:0048232,GO:0048285,GO:0048383,GO:0048513,GO:0048568,GO:0048598,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051301,GO:0051321,GO:0051493,GO:0051674,GO:0051704,GO:0051716,GO:0051780,GO:0055046,GO:0055057,GO:0055059,GO:0060004,GO:0060026,GO:0060027,GO:0060429,GO:0061343,GO:0061351,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0072089,GO:0072359,GO:0080175,GO:0097159,GO:0098552,GO:0098562,GO:0098722,GO:0098796,GO:0098797,GO:0140013,GO:1901363,GO:1902410,GO:1902494,GO:1903046,GO:1903047,GO:1905360,GO:1990939,GO:2000026
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04031,ko04131,ko04147,ko04812
Exons5
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19299.1prot_F-serratus_M_contig8.19299.1Fucus serratus malepolypeptideF-serratus_M_contig8 482559..484641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.5378683-CDS-F-serratus_M_contig8:482558..4826241622932373.5378683-CDS-F-serratus_M_contig8:482558..482624Fucus serratus maleCDSF-serratus_M_contig8 482559..482624 -
1690964276.5824087-CDS-F-serratus_M_contig8:482558..4826241690964276.5824087-CDS-F-serratus_M_contig8:482558..482624Fucus serratus maleCDSF-serratus_M_contig8 482559..482624 -
1622932373.5511668-CDS-F-serratus_M_contig8:482869..4829981622932373.5511668-CDS-F-serratus_M_contig8:482869..482998Fucus serratus maleCDSF-serratus_M_contig8 482870..482998 -
1690964276.6020644-CDS-F-serratus_M_contig8:482869..4829981690964276.6020644-CDS-F-serratus_M_contig8:482869..482998Fucus serratus maleCDSF-serratus_M_contig8 482870..482998 -
1622932373.5653512-CDS-F-serratus_M_contig8:483246..4833841622932373.5653512-CDS-F-serratus_M_contig8:483246..483384Fucus serratus maleCDSF-serratus_M_contig8 483247..483384 -
1690964276.6156769-CDS-F-serratus_M_contig8:483246..4833841690964276.6156769-CDS-F-serratus_M_contig8:483246..483384Fucus serratus maleCDSF-serratus_M_contig8 483247..483384 -
1622932373.5776103-CDS-F-serratus_M_contig8:483861..4839311622932373.5776103-CDS-F-serratus_M_contig8:483861..483931Fucus serratus maleCDSF-serratus_M_contig8 483862..483931 -
1690964276.6252577-CDS-F-serratus_M_contig8:483861..4839311690964276.6252577-CDS-F-serratus_M_contig8:483861..483931Fucus serratus maleCDSF-serratus_M_contig8 483862..483931 -
1622932373.5912945-CDS-F-serratus_M_contig8:484348..4846411622932373.5912945-CDS-F-serratus_M_contig8:484348..484641Fucus serratus maleCDSF-serratus_M_contig8 484349..484641 -
1690964276.636156-CDS-F-serratus_M_contig8:484348..4846411690964276.636156-CDS-F-serratus_M_contig8:484348..484641Fucus serratus maleCDSF-serratus_M_contig8 484349..484641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19299.1

>prot_F-serratus_M_contig8.19299.1 ID=prot_F-serratus_M_contig8.19299.1|Name=mRNA_F-serratus_M_contig8.19299.1|organism=Fucus serratus male|type=polypeptide|length=232bp
GEARAISSTSSDTCSEFALAGVGGGVDAGASSSDMLLADALKRARSAEAA
QEGSRRRVETLLEAAERSEKDALQLKMVIKFRDGTIAAQRKKNADQERVN
LAEENAHLRKQLEAGVGESSEVSKWRLQCKEAEARLVELMGDQTGDAKRL
VWGVADEERFQGDLDEKVLKLMEENRQLKEEAESFEERLQRERRRVEKRR
LSLENRAEFEAKKIVENALLSKLKGAEGRVEE
back to top

mRNA from alignment at F-serratus_M_contig8:482559..484641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19299.1 ID=mRNA_F-serratus_M_contig8.19299.1|Name=mRNA_F-serratus_M_contig8.19299.1|organism=Fucus serratus male|type=mRNA|length=2083bp|location=Sequence derived from alignment at F-serratus_M_contig8:482559..484641- (Fucus serratus male)
GGTGAGGCACGTGCCATTTCTTCCACGAGCTCAGACACATGCTCCGAGTT
TGCCCTCGCGGGTGTTGGGGGTGGCGTAGATGCCGGCGCTTCCTCTTCGG
ACATGCTCCTTGCTGACGCCCTAAAGAGGGCGAGGTCGGCCGAGGCGGCC
CAGGAAGGTTCGCGAAGGAGGGTGGAGACCCTCCTTGAGGCGGCGGAGAG
GAGCGAGAAAGACGCACTGCAGCTGAAGATGGTGATCAAGTTCCGGGATG
GGACGATCGCGGCGCAGAGGAAGAAGAACGCCGACCAAGAGAGGTGGGTG
TGCTTTGTTGGGGCGTTTTTCGAAGTCGAGGGGCGAGTGATATTTGTTTC
TGCCTCACGGGGAATGGATGTTGTATGTACCTGTACCTGGGAATGTGTTG
TGCTAGTATGTGGTAGTATGTGGAGCATTTGATGGCGTGTTTGTGACGTT
GCCGTGCTTCAGCAGAGATGCTCGCCGGAAGTCTGATTAGGAAGCGGGGG
GGGGTTAAAAAATGTTTTCCGCCGGGCAAGACTGTAGCTTTCGCTCCTAA
AGGGGGAGTGTTCCGCGCGAGCTACAGGATGAAAATGGCAAGGTTCCTCT
ATCACGGCTATTTACTGGGGATCTTGTCCGTGCTGTTGTCAATTTCGTTC
ACGTCACCTGATATGCTTTGGCTGGCTGCACTGCTCGATGCCTTTCGAAC
ATACGCACAGAGTAAACTTAGCGGAAGAAAACGCCCACCTCCGCAAGCAG
CTCGAGGCAGGGGTTGGAGAGTCTTCCGAGGTGAGGAGTACGAACGAACA
CGGAACACGCGCGGGACTGTCACATTTTATGTGTTTATAATATAAGTATA
GTATATTATATCTAATAATGCGATGGATATGATACTCTAAGTGAGTTATC
GGTACTCAAGACGAGAGGGGGACGGGTCTTCAAGGTAGCTGCTGTGCTTT
CTGTCTCCATCAAGGACGCACGCGTATCAAATCACCACACAGACATTTTT
TGTCGATCTACAGGGATTTTGTTGTTTCATAATGAGAAACCTGTCGAACG
CCTTCTCCAGATCTCCCTAGCGGTTGGCGACACCCGGGGAGAGATGGTAG
CTGATGTAGAAGTAGTACGTATGGCAGGTGAGGAATGACAGCCCAGTGCG
TTGAGTGGCCTACTCGGTCGGAAATGGGTAACTCACAAACGAAACAAAGA
AATAGTATCAACGAGTCGCGATATCTCTAAAGCTTTATCCCAAAATTTGA
TACGCAGGTGAGCAAGTGGCGGCTTCAGTGCAAGGAGGCGGAGGCGAGAC
TGGTGGAGCTGATGGGCGATCAGACCGGCGATGCCAAGAGACTGGTTTGG
GGCGTTGCCGACGAAGAGCGTTTTCAAGGCGATCTCGATGAAAAGGTTCG
ATGCATGGCCGTGGTGTCTCTTTACCGTTGTGTTACCGGTACATTGATAT
CCTGGTGTTGGTGTTGCTGTACAGTCCTCGACGGGAGATGGTCAGAAGTC
TGGTTCCAACGAGCATGTGGATGTGATGTTTTTTTAAAAAATCTTCGCAG
AAGTTTTTCACTAGTTTTTTACGTGTGGCGAGGTTTTTACGGCGTGGCGT
CAAATAAAAAACATGGGCTTTGAAACTAACGACCCGACATCAGGTTCTGA
AGTTGATGGAAGAAAACCGGCAGCTGAAGGAAGAGGCCGAGAGCTTTGAA
GAACGCCTCCAGCGGGAAAGGAGAAGGGTGGAAAAACGCCGCCTTTCCTT
GGAGAATCGCGCCGAGTTTGAGGTATAAATTGGAAGTATTTGTAAGCAGT
GCCAGACGCTTGCGTTCAATGTGATCCTCACGGGGCCGCAACGTGACGCG
CTACCGAGTCTCACGGTTATTTTTTTCGTTTGCGTTTTTTTTTCGTGATG
CAACAAATCTTTTTCTCGGCTAGAACCACACGGCGTCTCTTCAAACGACT
CGCGAGGCTAAGAATGACCGTGCGCCGTTGCTGCGCATGTTATCTCTCTC
TCTCTTTCTGACGGAAGGCCAAGAAGATCGTGGAGAACGCGTTGCTCAGC
AAGCTGAAGGGCGCTGAGGGCCGCGTAGAGGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig8:482559..484641-

>mRNA_F-serratus_M_contig8.19299.1 ID=mRNA_F-serratus_M_contig8.19299.1|Name=mRNA_F-serratus_M_contig8.19299.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig8:482559..484641- (Fucus serratus male)
GGTGAGGCACGTGCCATTTCTTCCACGAGCTCAGACACATGCTCCGAGTT
TGCCCTCGCGGGTGTTGGGGGTGGCGTAGATGCCGGCGCTTCCTCTTCGG
ACATGCTCCTTGCTGACGCCCTAAAGAGGGCGAGGTCGGCCGAGGCGGCC
CAGGAAGGTTCGCGAAGGAGGGTGGAGACCCTCCTTGAGGCGGCGGAGAG
GAGCGAGAAAGACGCACTGCAGCTGAAGATGGTGATCAAGTTCCGGGATG
GGACGATCGCGGCGCAGAGGAAGAAGAACGCCGACCAAGAGAGGGTGAGG
CACGTGCCATTTCTTCCACGAGCTCAGACACATGCTCCGAGTTTGCCCTC
GCGGGTGTTGGGGGTGGCGTAGATGCCGGCGCTTCCTCTTCGGACATGCT
CCTTGCTGACGCCCTAAAGAGGGCGAGGTCGGCCGAGGCGGCCCAGGAAG
GTTCGCGAAGGAGGGTGGAGACCCTCCTTGAGGCGGCGGAGAGGAGCGAG
AAAGACGCACTGCAGCTGAAGATGGTGATCAAGTTCCGGGATGGGACGAT
CGCGGCGCAGAGGAAGAAGAACGCCGACCAAGAGAGAGTAAACTTAGCGG
AAGAAAACGCCCACCTCCGCAAGCAGCTCGAGGCAGGGGTTGGAGAGTCT
TCCGAGAGTAAACTTAGCGGAAGAAAACGCCCACCTCCGCAAGCAGCTCG
AGGCAGGGGTTGGAGAGTCTTCCGAGGTGAGCAAGTGGCGGCTTCAGTGC
AAGGAGGCGGAGGCGAGACTGGTGGAGCTGATGGGCGATCAGACCGGCGA
TGCCAAGAGACTGGTTTGGGGCGTTGCCGACGAAGAGCGTTTTCAAGGCG
ATCTCGATGAAAAGGTGAGCAAGTGGCGGCTTCAGTGCAAGGAGGCGGAG
GCGAGACTGGTGGAGCTGATGGGCGATCAGACCGGCGATGCCAAGAGACT
GGTTTGGGGCGTTGCCGACGAAGAGCGTTTTCAAGGCGATCTCGATGAAA
AGGTTCTGAAGTTGATGGAAGAAAACCGGCAGCTGAAGGAAGAGGCCGAG
AGCTTTGAAGAACGCCTCCAGCGGGAAAGGAGAAGGGTGGAAAAACGCCG
CCTTTCCTTGGAGAATCGCGCCGAGTTTGAGGTTCTGAAGTTGATGGAAG
AAAACCGGCAGCTGAAGGAAGAGGCCGAGAGCTTTGAAGAACGCCTCCAG
CGGGAAAGGAGAAGGGTGGAAAAACGCCGCCTTTCCTTGGAGAATCGCGC
CGAGTTTGAGGCCAAGAAGATCGTGGAGAACGCGTTGCTCAGCAAGCTGA
AGGGCGCTGAGGGCCGCGTAGAGGAGGCCAAGAAGATCGTGGAGAACGCG
TTGCTCAGCAAGCTGAAGGGCGCTGAGGGCCGCGTAGAGGAG
back to top