mRNA_F-serratus_M_contig8.19298.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19298.1
Unique NamemRNA_F-serratus_M_contig8.19298.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19298.1 vs. uniprot
Match: A0A6H5JA04_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA04_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 4.140e-64
Identity = 153/287 (53.31%), Postives = 187/287 (65.16%), Query Frame = 1 
Query:    1 KIEQLSRAKERATEDSGSEVASLELKLATAIKDNSELLKANKALEEEADALDQDLERLEADKLAQERAASAERERSAAAVASLNQRMLQQDEAHERETEELHAEKRSVMEDLDAVTERLRSAKEAHAREIKEQQRRTNDLQERLSETRTQKEQSEGRLRQLQDDYDTVSEXXXXXXXXXXXLEQGLERT------------------------------VVEDRLVEAECRAEVEEFFKLAQKELTDQAQQACADREQTIELLAEELEAAKAYASGVRILLTTQEEE 771
            KI +LS AKERA  D GSE+ASLE+K+   IKDNSELL+ANKALEEEADALD  LE+LEA+K   E  A+AER  + +A+ SL +RM QQ E   RE E+  AEKRSV+EDL+ VTERLRSAKEAH +E+ E QRR+NDLQERL ETR  K Q EGRL+Q+QDDYDT+SE           LE  LER                               + E+ L +AE RAE EEFFKLAQ+ ++ QA + CA+RE+ IE L EELE ++ YA G+R LL+  E E
Sbjct:  760 KIGELSEAKERAVTDGGSELASLEVKIVGFIKDNSELLRANKALEEEADALDLSLEQLEAEKKGLEEKAAAERAEAKSAIKSLEERMQQQQEXXXRELEDQQAEKRSVVEDLEDVTERLRSAKEAHGKEVDEHQRRSNDLQERLVETRALKGQLEGRLKQVQDDYDTLSEQAHFTQSRAQDLESSLERAAEDLRRAVAAGTARACIVQGQLRETEARLCLAEEGLADAELRAEGEEFFKLAQEAISKQAGEVCAEREKRIESLLEELETSRGYADGLRALLSGAEHE 1046
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA04_9PHAE4.140e-6453.31Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:479087..481924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue6.3e-47
Seed eggNOG ortholog2880.D8LRJ7
KEGG koko:K04543,ko:K04546,ko:K10400,ko:K10402,ko:K11498
KEGG Pathwayko04014,ko04062,ko04151,ko04371,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04926,ko05032,ko05034,ko05167,ko05200,map04014,map04062,map04151,map04371,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04926,map05032,map05034,map05167,map05200
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001667,GO:0001700,GO:0002009,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003365,GO:0003371,GO:0003379,GO:0003380,GO:0003674,GO:0003676,GO:0003677,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005834,GO:0005856,GO:0005871,GO:0005873,GO:0005875,GO:0005886,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007155,GO:0007163,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007369,GO:0007391,GO:0007398,GO:0007399,GO:0007405,GO:0007498,GO:0007507,GO:0007584,GO:0007610,GO:0007635,GO:0007637,GO:0008104,GO:0008150,GO:0008283,GO:0008356,GO:0008574,GO:0009524,GO:0009555,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009898,GO:0009987,GO:0009991,GO:0010470,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016331,GO:0016462,GO:0016477,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017145,GO:0019882,GO:0019884,GO:0019886,GO:0019897,GO:0019898,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022610,GO:0023052,GO:0030010,GO:0030154,GO:0030952,GO:0031234,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033206,GO:0035050,GO:0035295,GO:0036445,GO:0040011,GO:0042074,GO:0042221,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043519,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0045176,GO:0045995,GO:0048002,GO:0048103,GO:0048193,GO:0048229,GO:0048232,GO:0048285,GO:0048383,GO:0048513,GO:0048568,GO:0048598,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051301,GO:0051321,GO:0051493,GO:0051674,GO:0051704,GO:0051716,GO:0051780,GO:0055046,GO:0055057,GO:0055059,GO:0060004,GO:0060026,GO:0060027,GO:0060429,GO:0061343,GO:0061351,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0072089,GO:0072359,GO:0080175,GO:0097159,GO:0098552,GO:0098562,GO:0098722,GO:0098796,GO:0098797,GO:0140013,GO:1901363,GO:1902410,GO:1902494,GO:1903046,GO:1903047,GO:1905360,GO:1990939,GO:2000026
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Ec32 ortholog descriptionKinesin like-protein
Ec32 orthologEc-12_000040.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04031,ko04131,ko04147,ko04812
Exons5
Model size802
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19298.1prot_F-serratus_M_contig8.19298.1Fucus serratus malepolypeptideF-serratus_M_contig8 479089..481924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932373.4442997-CDS-F-serratus_M_contig8:479088..4793191622932373.4442997-CDS-F-serratus_M_contig8:479088..479319Fucus serratus maleCDSF-serratus_M_contig8 479089..479319 -
1690964276.5134542-CDS-F-serratus_M_contig8:479088..4793191690964276.5134542-CDS-F-serratus_M_contig8:479088..479319Fucus serratus maleCDSF-serratus_M_contig8 479089..479319 -
1622932373.4611428-CDS-F-serratus_M_contig8:479355..4794631622932373.4611428-CDS-F-serratus_M_contig8:479355..479463Fucus serratus maleCDSF-serratus_M_contig8 479356..479463 -
1690964276.5313873-CDS-F-serratus_M_contig8:479355..4794631690964276.5313873-CDS-F-serratus_M_contig8:479355..479463Fucus serratus maleCDSF-serratus_M_contig8 479356..479463 -
1622932373.4735315-CDS-F-serratus_M_contig8:479775..4799171622932373.4735315-CDS-F-serratus_M_contig8:479775..479917Fucus serratus maleCDSF-serratus_M_contig8 479776..479917 -
1690964276.5445714-CDS-F-serratus_M_contig8:479775..4799171690964276.5445714-CDS-F-serratus_M_contig8:479775..479917Fucus serratus maleCDSF-serratus_M_contig8 479776..479917 -
1622932373.486081-CDS-F-serratus_M_contig8:481042..4812341622932373.486081-CDS-F-serratus_M_contig8:481042..481234Fucus serratus maleCDSF-serratus_M_contig8 481043..481234 -
1690964276.5582807-CDS-F-serratus_M_contig8:481042..4812341690964276.5582807-CDS-F-serratus_M_contig8:481042..481234Fucus serratus maleCDSF-serratus_M_contig8 481043..481234 -
1622932373.499938-CDS-F-serratus_M_contig8:481799..4819241622932373.499938-CDS-F-serratus_M_contig8:481799..481924Fucus serratus maleCDSF-serratus_M_contig8 481800..481924 -
1690964276.570116-CDS-F-serratus_M_contig8:481799..4819241690964276.570116-CDS-F-serratus_M_contig8:481799..481924Fucus serratus maleCDSF-serratus_M_contig8 481800..481924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19298.1

>prot_F-serratus_M_contig8.19298.1 ID=prot_F-serratus_M_contig8.19298.1|Name=mRNA_F-serratus_M_contig8.19298.1|organism=Fucus serratus male|type=polypeptide|length=266bp
KIEQLSRAKERATEDSGSEVASLELKLATAIKDNSELLKANKALEEEADA
LDQDLERLEADKLAQERAASAERERSAAAVASLNQRMLQQDEAHERETEE
LHAEKRSVMEDLDAVTERLRSAKEAHAREIKEQQRRTNDLQERLSETRTQ
KEQSEGRLRQLQDDYDTVSEQARFSQGRVEELEQGLERTVVEDRLVEAEC
RAEVEEFFKLAQKELTDQAQQACADREQTIELLAEELEAAKAYASGVRIL
LTTQEEEVIERGPWLV
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mRNA from alignment at F-serratus_M_contig8:479087..481924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19298.1 ID=mRNA_F-serratus_M_contig8.19298.1|Name=mRNA_F-serratus_M_contig8.19298.1|organism=Fucus serratus male|type=mRNA|length=2838bp|location=Sequence derived from alignment at F-serratus_M_contig8:479087..481924- (Fucus serratus male)
AAGATCGAACAGCTGTCGAGGGCCAAGGAGCGTGCCACAGAGGACAGCGG
GAGCGAGGTGGCGTCCCTCGAGCTGAAGCTCGCCACGGCGATCAAGGACA
ACTCGGAGCTGCTAAAAGCCAACAAGTGGGTTCGGCCCCTTACACCGGCG
CTAATTATCTCGTCCTGATATTTTTTTTGTCTTGCTGAGTTGAAGAAAAA
TGCGAGTGCCTAAACCTTCTGATTTAATTATTTACCGCCGCGCAGGTGAG
GTGCGATGTTTTGACGGTTACCTTTTTTTTAGACAGAAAAAAGTGGATCG
CAGATTAGAGATCGAGTGCGTTCCTTTTTTTGTGAAAAGAACATAAACTT
TTTCTTCTGTTTATGCCTTTTGACCTCAATAAACAAACCCGATTTCTGCA
ATATCTTGATGATAGACTTCTACAGGGAAAATCCTGCCCCGGTGGTTTAT
GAGTCAGTCTTTCACGCACGAACAGCCGTTCGCAGCACATAACTTAAAGG
TTGTTTTGTGAAGGAAGTCTCAAGCGTTTTCTGTTGGTTGGGAGTTTGCG
TAGTAAGATGACCCGCGACTACGGAGGAGAGGAACTCGCTTGCTCGGTGG
TCGGTGGTCCGCTCTCTGAACGAGTCAAACAAACGGGGTGCGACTTGCGA
ACGAATAGAATGCCTTTTCCTTTTTTGTTTGTGTGTGTAGGGCATTGGAA
GAAGAGGCAGATGCCCTAGACCAAGATCTGGAGCGGCTTGAGGCGGATAA
GCTCGCTCAAGAGAGAGCGGCCAGCGCCGAGCGCGAAAGGTCCGCAGCAG
CTGTAGCGAGCTTGAACCAGCGCATGCTGCAGCAAGATGAGGCGCATGAG
CGTGAAACCGAGGAGCTTCACGCCGAGAAAAGGTGAGCTGAAGTGATCCA
TTCTACTGTACCTACCGTACCACCAGAATGTAATTCAGCTCTGCTGTTTG
CTCTACGCCAACTGTAGCTTCACCTTTCTCTCTCTCTCTCTCTCTCTATT
TTTGTTTGTATTTAAAGAAAAATACAGAACGTACCTAGACGTTCTGAGCA
TCCCCCAGTCAGGGGGAAAAAATGTCAGAACGTTTAGGTCGGATCAAAGG
CTGCAAAAATACAAAACCTCTTCATGGCTTTTAAACGGGTTCCCCTATGA
TGGTAACATTGGGTCAACAGTATAATATCGGGGAGAAGTCCACCGTTATA
CTGTACACTTACATTAATCGCCATGCAGGGACACAAGAAAAAACAAACAA
ACAGCGAAGGCTGAAGAGTATATAATCAAACAACAAAGACAAATCCAAAT
ACCGCTATCGGGGAGAAGTCCACCGTTATACTGTACAATTACATTAATCG
CCATGCAGGCACACAAGAAAAAAATCAAAAAAACAGCGAGGACAAAACAG
TACATCATCAAACAACAAAGACAAATCCAAGACGACATTGAAACGCGAAC
AGAGGACCATGATGTAGATTATCTTCATAATCCAGAAAGTACAGCACACC
GTTATTCACCTGAAAGTAGACGAAGATCAGTGGGAGATCACACAAGGAGG
TAAGAGGCACGCGGAAAGAACTGGGTTCCTCGCTCCAACTTGTCAGGGCT
ACGACGCACAGATGCTCCTCATGCTTGGACTTAGCTATGGCCCCGCGGTG
ACCAGAAAAATAAAAGGAACACAAAAGGAAAGAGCATCTGTTTGTCAAAA
GTGATCTATTGGGCCTCCGACCAACTCGTGCAATCTCCCATACGACGACC
CGGGATGTCTTGAACTCCATGGTTTTTATTCCGAGCTGACGGTTGTGCCT
CGGCCCGGATCTTCTCGATGCAGAACGGGACTAAACTGTATCATTGTACT
TTGGTAAAGTAAAATTTATCTACTCTTCTAGTCGGCAGAAATATTATCAC
AACCACCTGACAATATTTCTTACCGATCTAGAGAGGGTTACAGAAAAAAT
TAAAGAACACACAATCACTATAATGTTATTTTTTTCGATTTGCAACATTT
ATTTCAGATCTGTCATGGAAGACTTGGATGCGGTGACCGAGCGCTTAAGG
TCCGCGAAAGAGGCTCACGCTCGGGAGATCAAAGAGCAGCAACGCCGCAC
CAATGACCTGCAAGAGCGTCTGTCTGAAACACGGACACAAAAGGAACAGG
TGCGAGGGATATGATAGGAGGTTCATAAGACGCGCTGCTCGAGGGTTATA
CGAGGCGCTGCCCGTCTTTCGAGCGGCGTTGCTAGCTCGACATACCCTCC
TATCTTATTTAATCTTATCCTACAGAACCTTCCGTACATATTTTCTCACC
ACCGTTCCACATTTTTTTGCTCAGTTTGTGGCCGACCCTGACAGTTGTTT
GGGCGCGATCGGTCCTAATATGCATTCTACACCATAATAATTGTTGTAGC
TCCTTTTGGTTTACTTACATCGCGCTTGATTTGCTTTTTGTTTTCTGTTT
TTTGGGTGCAGTCAGAAGGCCGCCTCAGGCAGTTGCAGGACGATTACGAT
ACGGTCTCGGAGCAGGCGCGGTTCAGCCAGGGCAGGGTGGAGGAACTCGA
GCAGGGCCTCGAGCGCACCGCCGAAGACCTCTTGCGCGCCCGCGCGCATG
CGGAGGTCGTTGAGGATAGACTGGTTGAAGCCGAATGTCGGGCGGAGGTC
GAGGAATTCTTCAAGCTCGCCCAAAAGGAGCTCACCGATCAGGCGCAGCA
GGCATGTGCGGATCGTGAGCAGACAATCGAACTGCTCGCGGAGGAGCTCG
AGGCCGCCAAGGCGTACGCGTCGGGGGTGAGGATTCTCCTGACCACTCAG
GAAGAGGAGGTTATCGAAAGGGGACCGTGGCTGGTGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:479087..481924-

>mRNA_F-serratus_M_contig8.19298.1 ID=mRNA_F-serratus_M_contig8.19298.1|Name=mRNA_F-serratus_M_contig8.19298.1|organism=Fucus serratus male|type=CDS|length=1596bp|location=Sequence derived from alignment at F-serratus_M_contig8:479087..481924- (Fucus serratus male)
AAGATCGAACAGCTGTCGAGGGCCAAGGAGCGTGCCACAGAGGACAGCGG
GAGCGAGGTGGCGTCCCTCGAGCTGAAGCTCGCCACGGCGATCAAGGACA
ACTCGGAGCTGCTAAAAGCCAACAAAAGATCGAACAGCTGTCGAGGGCCA
AGGAGCGTGCCACAGAGGACAGCGGGAGCGAGGTGGCGTCCCTCGAGCTG
AAGCTCGCCACGGCGATCAAGGACAACTCGGAGCTGCTAAAAGCCAACAA
GGCATTGGAAGAAGAGGCAGATGCCCTAGACCAAGATCTGGAGCGGCTTG
AGGCGGATAAGCTCGCTCAAGAGAGAGCGGCCAGCGCCGAGCGCGAAAGG
TCCGCAGCAGCTGTAGCGAGCTTGAACCAGCGCATGCTGCAGCAAGATGA
GGCGCATGAGCGTGAAACCGAGGAGCTTCACGCCGAGAAAAGGGCATTGG
AAGAAGAGGCAGATGCCCTAGACCAAGATCTGGAGCGGCTTGAGGCGGAT
AAGCTCGCTCAAGAGAGAGCGGCCAGCGCCGAGCGCGAAAGGTCCGCAGC
AGCTGTAGCGAGCTTGAACCAGCGCATGCTGCAGCAAGATGAGGCGCATG
AGCGTGAAACCGAGGAGCTTCACGCCGAGAAAAGATCTGTCATGGAAGAC
TTGGATGCGGTGACCGAGCGCTTAAGGTCCGCGAAAGAGGCTCACGCTCG
GGAGATCAAAGAGCAGCAACGCCGCACCAATGACCTGCAAGAGCGTCTGT
CTGAAACACGGACACAAAAGGAACAGATCTGTCATGGAAGACTTGGATGC
GGTGACCGAGCGCTTAAGGTCCGCGAAAGAGGCTCACGCTCGGGAGATCA
AAGAGCAGCAACGCCGCACCAATGACCTGCAAGAGCGTCTGTCTGAAACA
CGGACACAAAAGGAACAGTCAGAAGGCCGCCTCAGGCAGTTGCAGGACGA
TTACGATACGGTCTCGGAGCAGGCGCGGTTCAGCCAGGGCAGGGTGGAGG
AACTCGAGCAGGGCCTCGAGCGCACCTCAGAAGGCCGCCTCAGGCAGTTG
CAGGACGATTACGATACGGTCTCGGAGCAGGCGCGGTTCAGCCAGGGCAG
GGTGGAGGAACTCGAGCAGGGCCTCGAGCGCACCGTCGTTGAGGATAGAC
TGGTTGAAGCCGAATGTCGGGCGGAGGTCGAGGAATTCTTCAAGCTCGCC
CAAAAGGAGCTCACCGATCAGGCGCAGCAGGCATGTGCGGATCGTGAGCA
GACAATCGAACTGCTCGCGGAGGAGCTCGAGGCCGCCAAGGCGTACGCGT
CGGGGGTGAGGATTCTCCTGACCACTCAGGAAGAGGAGGTTATCGAAAGG
GGACCGTGGCTGGTGGTCGTTGAGGATAGACTGGTTGAAGCCGAATGTCG
GGCGGAGGTCGAGGAATTCTTCAAGCTCGCCCAAAAGGAGCTCACCGATC
AGGCGCAGCAGGCATGTGCGGATCGTGAGCAGACAATCGAACTGCTCGCG
GAGGAGCTCGAGGCCGCCAAGGCGTACGCGTCGGGGGTGAGGATTCTCCT
GACCACTCAGGAAGAGGAGGTTATCGAAAGGGGACCGTGGCTGGTG
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