mRNA_F-serratus_M_contig8.19289.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19289.1
Unique NamemRNA_F-serratus_M_contig8.19289.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A7S2TQT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQT0_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 9.790e-26
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 1 
Query: 1009 DSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASSANVGKFVDTLKDTAAPEELYRKMRARGHW 1290
            +S+YW + +R     DLGH+CRECKRP   + ETIA+RRGGRIE++YH+ACFS  +DPR+Q  +S   GK+V  +  T AP   Y+KMR   HW
Sbjct:   28 ESQYWQHRYRPCVARDLGHTCRECKRPLTKIGETIAIRRGGRIEMRYHEACFSGESDPRTQKKASHKQGKWVRCVAGTKAPLGKYKKMRTTSHW 121
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A8J1Z4U7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z4U7_9DINO)

HSP 1 Score: 99.8 bits (247), Expect = 7.930e-20
Identity = 55/114 (48.25%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:  949 LTAASTVPSSSSTAFFGNCDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASSANVGKFVDTLKDTAAPEELYRKMRARGHW 1290
            L  A +V  S  T   G  D++ YWDY  R T R DLGH CREC++PF  + E I  RRG RI  +YH ACFS  ADPRSQ  SS + G  V T  + AAP   + KMR   H+
Sbjct:   59 LAGAQSVACSEVT--IGAGDETLYWDYQHRLTLRSDLGHKCRECRKPFSKIGEPITERRGSRIACRYHAACFSGYADPRSQARSSTHEGNLVGTQFE-AAPGTPFSKMRTDTHF 169
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A7S1LEE0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LEE0_NEODS)

HSP 1 Score: 92.4 bits (228), Expect = 6.260e-19
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1 
Query: 1018 YWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASSANVGKFVDTLKDTAAPEELYRKMRARGHW 1290
            YW    RS    D+GH C+ECKRPF  + E + VRRGGRIEL+YH+ C+S  ADPR+Q +SS N  +    L   AAP   +RKMR   H+
Sbjct:   18 YWASQARSCEPRDVGHPCKECKRPFQRVGEPLMVRRGGRIELRYHEQCYSGSADPRTQASSSFNSSQHAAALS-AAAPALPFRKMRTSSHF 107
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A8J2F2Y4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2F2Y4_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 7.420e-19
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:  997 GNCDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASSANVGKFVDTLKDTAAPEELYRKMRARGHW 1290
            G  D++ YWDY  R   R DLGH CREC++PF  + E I  RRG RI  +YH  CFS  ADPRSQ  SS + G+   T  + AAP+  + KMR + H+
Sbjct:  164 GAGDETMYWDYQHRLAQRSDLGHMCRECRKPFTQVGEPITERRGSRISTRYHAECFSGYADPRSQARSSTHEGRLAGTQFE-AAPDGPFSKMRTQSHF 260
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A3P3YIB7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIB7_PLABS)

HSP 1 Score: 78.2 bits (191), Expect = 4.320e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 
Query: 1009 DSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASSANVGKFVDTLKDTAAPE 1254
            D  YW +  R     DLGH CRECK+P   L + IA RRG R++++YH+ACFS   DPRSQ   SA + K+    +D+  P+
Sbjct:   65 DEDYWSFQVRECRPADLGHMCRECKKPITALGDLIAERRGARVQMRYHRACFSDDGDPRSQ--DSAKLSKWY-ARRDSGQPK 143
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BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Match: A0A0L0DNU8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNU8_THETB)

HSP 1 Score: 53.1 bits (126), Expect = 8.410e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query: 1063 HSCRECKRPFLNLNETIAVRRGGRIELKYHQACFSMVADPRSQPASS 1203
            H CRECK  ++       +R G RI+L+YHQ CFS  ADPRSQ  SS
Sbjct:   72 HLCRECK-AYITKGSKYIIRHGARIQLRYHQECFSGDADPRSQAGSS 117
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2TQT0_9EUKA9.790e-2652.13Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J1Z4U7_9DINO7.930e-2048.25Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S1LEE0_NEODS6.260e-1949.45Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A8J2F2Y4_9DINO7.420e-1947.96Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A3P3YIB7_PLABS4.320e-1245.12Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0L0DNU8_THETB8.410e-553.19Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:246343..249394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue8.8e-19
Seed eggNOG ortholog227086.JGI_V11_126617
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6M4@1,2SDAD@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1669
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19289.1prot_F-serratus_M_contig8.19289.1Fucus serratus malepolypeptideF-serratus_M_contig8 246719..248845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932372.62803-UTR-F-serratus_M_contig8:246342..2467181622932372.62803-UTR-F-serratus_M_contig8:246342..246718Fucus serratus maleUTRF-serratus_M_contig8 246343..246718 -
1690964276.135747-UTR-F-serratus_M_contig8:246342..2467181690964276.135747-UTR-F-serratus_M_contig8:246342..246718Fucus serratus maleUTRF-serratus_M_contig8 246343..246718 -
1622932372.6800318-UTR-F-serratus_M_contig8:248845..2493941622932372.6800318-UTR-F-serratus_M_contig8:248845..249394Fucus serratus maleUTRF-serratus_M_contig8 248846..249394 -
1690964276.1747715-UTR-F-serratus_M_contig8:248845..2493941690964276.1747715-UTR-F-serratus_M_contig8:248845..249394Fucus serratus maleUTRF-serratus_M_contig8 248846..249394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932372.645182-CDS-F-serratus_M_contig8:246718..2468871622932372.645182-CDS-F-serratus_M_contig8:246718..246887Fucus serratus maleCDSF-serratus_M_contig8 246719..246887 -
1690964276.1488576-CDS-F-serratus_M_contig8:246718..2468871690964276.1488576-CDS-F-serratus_M_contig8:246718..246887Fucus serratus maleCDSF-serratus_M_contig8 246719..246887 -
1622932372.6599796-CDS-F-serratus_M_contig8:248270..2488451622932372.6599796-CDS-F-serratus_M_contig8:248270..248845Fucus serratus maleCDSF-serratus_M_contig8 248271..248845 -
1690964276.1599274-CDS-F-serratus_M_contig8:248270..2488451690964276.1599274-CDS-F-serratus_M_contig8:248270..248845Fucus serratus maleCDSF-serratus_M_contig8 248271..248845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19289.1

>prot_F-serratus_M_contig8.19289.1 ID=prot_F-serratus_M_contig8.19289.1|Name=mRNA_F-serratus_M_contig8.19289.1|organism=Fucus serratus male|type=polypeptide|length=248bp
MDEKRRHSDSNNVNTPVTDIVRRNKWIGSLAESSRPGQFPHEDRGHDAKE
GFQRAHHENSRGARGERQRGDECSLAIIRARRQSQHFPELSRRRETTRHD
DGHRRSESLGWPAIATTTNRRPSLKGYRNASAPLTAASTVPSSSSTAFFG
NCDDSRYWDYAFRSTHRGDLGHSCRECKRPFLNLNETIAVRRGGRIELKY
HQACFSMVADPRSQPASSANVGKFVDTLKDTAAPEELYRKMRARGHW*
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mRNA from alignment at F-serratus_M_contig8:246343..249394-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19289.1 ID=mRNA_F-serratus_M_contig8.19289.1|Name=mRNA_F-serratus_M_contig8.19289.1|organism=Fucus serratus male|type=mRNA|length=3052bp|location=Sequence derived from alignment at F-serratus_M_contig8:246343..249394- (Fucus serratus male)
CAATGTTCCCACCTAAACCTTTTGATCAGGAGGTTTAGTTGCGTTCCGAC
TTTTCTTTCAAAACAAGACCCCCAGCCAGGCGATCTTACTTGGCTAAATA
AGTGCATCCCCCTCCCACCCCCTTCTCCGCTCTAGGTGGTATTGATTATT
TCGAGGATATCGGAGCTGAATCTTAAGAAGTTTCTGGGTATATATTTCAG
AAATTCGTATTACTCTTCTACCTGTTCCACAGGCATGAGAAGGTACAGTA
CTGCAGTAGAAGTATCTCTTACACCACAGTTCCATACGAGTACGTACATA
CGTTCTTAAGAGCAGCGAAGATACAAGCACAACAGACATAAGTACTCGTA
TAGTCTAGTACTGTGTGTAATACACGAGTAGTACATTACTTGTGTATTAA
TAGTGCGCTTATCGGGGTGCGGATCTGTTACCGGCGAGTCTAGACCGTCT
GACATTGTCTCTGACGTCTCGTGTTTTCGGCCACAAAACCGACACCGACG
CTACTGGTCCGCAGAACAATTTGAACGACGGGGGTCTGATGCCTTGAGAA
TGGATGAGAAGCGAAGACATTCAGATTCAAACAACGTCAACACCCCGGTT
ACCGACATCGTCCGGCGAAATAAGTGGATTGGCTCGCTTGCTGAAAGTTC
TCGACCAGGTCAATTCCCGCACGAAGATCGCGGACATGATGCGAAGGAAG
GTTTCCAGCGCGCGCACCACGAGAACAGTAGAGGCGCAAGAGGCGAACGG
CAACGTGGAGACGAGTGTTCGCTCGCCATTATTAGAGCTAGACGCCAGTC
TCAGCATTTTCCTGAACTTAGCCGACGGCGAGAAACGACTAGGCACGATG
ACGGACACCGACGATCAGAGTCGTTAGGATGGCCGGCGATTGCAACGACG
ACAAATCGTCGACCGTCGCTCAAAGGTTACCGCAACGCCTCGGCTCCTCT
TACGGCAGCATCCACCGTGCCTTCGTCGTCGTCCACCGCATTCTTCGGGA
ATTGCGACGATTCGCGGTACTGGGACTACGCTTTCCGTTCCACGCACAGG
GGGGATCTGGGCCATAGCTGCCGGGAGTGCAAGAGACCGTTTTTGAATCT
GAATGAGACCATCGCCGTGAGAAGGTAGGGGGAATATATGCATCCATATC
AACATATTTTAGCGCTCCTCTTATAAATAGGGCCGTTCTTAACGCATACA
GATTTCTCGGAAATTTCCTAGATCGCAAAAACACTACCTGGTAGCTTTCT
TTAACGCATTTAGGCAATGTGTCATTTCCTTTTCGTAGATTCAAACCCTC
GTCGGTGATGTTGAAAATTATACTATAAATAAAGAAAGACACTCTCTCAT
TTTGAAATAAGAAAACAGTACCAGGTACGTCACACAAGCACATAACTCGT
AGTCTACTTGGAAGTGATACCGACATGGTCTTTTGCTATCAGGTTGCGCA
ATGAGTGAGCGGAGAGTGCAAAATTGTCGGTAGAATGCTCTCTCTCTCTC
TGTGCAGCATTGCTGATGTATGCAGCTCATCCTCTCGTCAAGAAGCGTGC
AAGGAAACGGCGGTCGCGTAGAGGCTGGAAAGACGCAGTATATCTGCAAG
TTTTTCAAAACGTCTGCTGAGGCATCCGGTACTGACGCCTGAAACAGTAG
GGGCCGCGCTCGCCGAGGTCTTCGCAGTGATCATCCCATTCAAGGCGATG
ACTCCTCTCGTTGATGCTCCTCCTGCTATCGGGAGCGAGCATGGCGTGTG
TGACGCTTGACGTGACGGACGCCACTACGACCACAGCAGCGGTCATGGCT
ACAAGCATCCTGTGGGCGTTTATCTTGTCGTTGGCTCGCCTTCGCCGAGT
AGAGGAGGCGAGTCCGGGCGATCCGGAGCGCTTCCGGCTGTCGTTCATGG
TACCGATGGTCACTGGCGAGATTCCTGGCCCAATGTTACACTGGGGTCGG
TGCCGCACGCTTCAAACCGGTGCCCTGGACGATCTAATGTGGACACTGCC
TGATGTTGTCCGGTGTTTCTAGGAAATCCGAGATCCAGGCTCGGAAATGT
AGAGAGATATATTTTCCGAGATTTTTGGTGGCCCTTCGCTTTCCGAGATG
TAGGAAATATTTTCCTGATATTTAGGAATCTAAGAAAAAATAAACGCGTT
AAGAACGGTCCTTATATATTCCTCCCGCATCAACGACGGGGCGAGGTGAG
ACTTGGATTGTCATGAATACCCGAACCACCAGGCACACATCGAGTCGATC
ATTTGCTAACGGACACTTGCTCCCGCGAAGGCCTCGTACACGCGGGATAA
CACAGAAGCCAATCCTGAGCAGGTCTCAATTTCATCTTTGCGAACAATTG
TTCCGAGAACCACGTGCGAGATACAATCGTTATAAATACACATCACGAGA
GGCCTCCATTTGTGACCCCAGTTCGCCCCTCGGATCATTTGTCCGCGTCT
TTTGTACTCGATCGATCACACGTCCGGCGGCGTCGACCACACTCGCGTCA
ACGTAAGAGGTGGCCGGATCGAGCTGAAATACCATCAAGCGTGCTTCAGC
ATGGTTGCCGACCCTCGTAGTCAACCAGCGAGCTCGGCGAACGTTGGAAA
GTTCGTGGATACGCTCAAAGATACCGCGGCGCCGGAAGAGCTGTACCGTA
AGATGCGCGCGCGAGGTCATTGGTGATGAGGTCAATTTTGCCAGTCCAGC
CGGATCGAAAGACTTCGCTCGTTGCTCGCATCGGCTGGAAGGTTTCCTGT
CCATGTCTTGACCTACGTTCGGCATTTTCGCCTTACGTTCACTGTCGTCG
TTCATTCCATCGCTTCAGGGCGGTAGGGGGTTGACATCAAAGCCCCGGGT
CATCGTCGTTAGGACGCCTGTCCTGACGTTGTCCCGCTTATTATGTACAT
CAGATTATTCTTGTGGTATATCGGCTGACAACGGGGGTGGTTAAGAAAAA
AATGTTGGGTGTTTCCTTGTCAGTGATGGCTTCTGTATGATTTTGTGGGG
CCTCCCTATATGATTTTGTTTTTTTGCCATACAAGCACAAGCCTTAACCT
CC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:246343..249394-

>mRNA_F-serratus_M_contig8.19289.1 ID=mRNA_F-serratus_M_contig8.19289.1|Name=mRNA_F-serratus_M_contig8.19289.1|organism=Fucus serratus male|type=CDS|length=1488bp|location=Sequence derived from alignment at F-serratus_M_contig8:246343..249394- (Fucus serratus male)
ATGGATGAGAAGCGAAGACATTCAGATTCAAACAACGTCAACACCCCGGT
TACCGACATCGTCCGGCGAAATAAGTGGATTGGCTCGCTTGCTGAAAGTT
CTCGACCAGGTCAATTCCCGCACGAAGATCGCGGACATGATGCGAAGGAA
GGTTTCCAGCGCGCGCACCACGAGAACAGTAGAGGCGCAAGAGGCGAACG
GCAACGTGGAGACGAGTGTTCGCTCGCCATTATTAGAGCTAGACGCCAGT
CTCAGCATTTTCCTGAACTTAGCCGACGGCGAGAAACGACTAGGCACGAT
GACGGACACCGACGATCAGAGTCGTTAGGATGGCCGGCGATTGCAACGAC
GACAAATCGTCGACCGTCGCTCAAAGGTTACCGCAACGCCTCGGCTCCTC
TTACGGCAGCATCCACCGTGCCTTCGTCGTCGTCCACCGCATTCTTCGGG
AATTGCGACGATTCGCGGTACTGGGACTACGCTTTCCGTTCCACGCACAG
GGGGGATCTGGGCCATAGCTGCCGGGAGTGCAAGAGACCGTTTTTGAATC
TGAATGAGACCATCGCCGTGAGAAGATGGATGAGAAGCGAAGACATTCAG
ATTCAAACAACGTCAACACCCCGGTTACCGACATCGTCCGGCGAAATAAG
TGGATTGGCTCGCTTGCTGAAAGTTCTCGACCAGGTCAATTCCCGCACGA
AGATCGCGGACATGATGCGAAGGAAGGTTTCCAGCGCGCGCACCACGAGA
ACAGTAGAGGCGCAAGAGGCGAACGGCAACGTGGAGACGAGTGTTCGCTC
GCCATTATTAGAGCTAGACGCCAGTCTCAGCATTTTCCTGAACTTAGCCG
ACGGCGAGAAACGACTAGGCACGATGACGGACACCGACGATCAGAGTCGT
TAGGATGGCCGGCGATTGCAACGACGACAAATCGTCGACCGTCGCTCAAA
GGTTACCGCAACGCCTCGGCTCCTCTTACGGCAGCATCCACCGTGCCTTC
GTCGTCGTCCACCGCATTCTTCGGGAATTGCGACGATTCGCGGTACTGGG
ACTACGCTTTCCGTTCCACGCACAGGGGGGATCTGGGCCATAGCTGCCGG
GAGTGCAAGAGACCGTTTTTGAATCTGAATGAGACCATCGCCGTGAGAAG
AGGTGGCCGGATCGAGCTGAAATACCATCAAGCGTGCTTCAGCATGGTTG
CCGACCCTCGTAGTCAACCAGCGAGCTCGGCGAACGTTGGAAAGTTCGTG
GATACGCTCAAAGATACCGCGGCGCCGGAAGAGCTGTACCGTAAGATGCG
CGCGCGAGGTCATTGGTGAAGGTGGCCGGATCGAGCTGAAATACCATCAA
GCGTGCTTCAGCATGGTTGCCGACCCTCGTAGTCAACCAGCGAGCTCGGC
GAACGTTGGAAAGTTCGTGGATACGCTCAAAGATACCGCGGCGCCGGAAG
AGCTGTACCGTAAGATGCGCGCGCGAGGTCATTGGTGA
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