mRNA_F-serratus_M_contig8.19280.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19280.1
Unique NamemRNA_F-serratus_M_contig8.19280.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19280.1 vs. uniprot
Match: A0A6H5JSB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB3_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.450e-38
Identity = 84/124 (67.74%), Postives = 95/124 (76.61%), Query Frame = 1 
Query:  310 SPFASAQARKFVREQLRRACRKGPPMSLLMDMDSRTGGLALARYAHALDRVGGSGSSSGRGRGGCA-GQLELRRPDVLRETMLLVQGFLDDLQGATVTSKGAGPEYFRLFILEDACQQCLQELQ 678
            SPFASA A   V EQLRRACR+GP  SL+ DMDSRTGGLALARYAH LD VGG+   SGR   G A G+LELR P  L +  LLVQG LD+L+GA +T+  AGPE+FRLFILEDA QQCLQEL+
Sbjct:  765 SPFASALAGDVVCEQLRRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARGGSGRAEAGAAWGRLELREPKKLLQNKLLVQGLLDELRGAVITADNAGPEHFRLFILEDAAQQCLQELE 888
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BLAST of mRNA_F-serratus_M_contig8.19280.1 vs. uniprot
Match: D7G1P6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.170e-32
Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:  355 LRRACRKGPPMSLLMDMDSRTGGLALARYAHALDRVGGSGSSSGRGRGGCA-GQLELRRPDVLRETMLLVQGFLDDLQGATVTSKGAGPEYFRLFILEDACQQCLQELQ 678
            L RACR+GP  SL+ DMDSRTGGLALARYAH LD VGG+ + SGR   G A G+L LR P  L +  LLVQG LD+L+GA +T+  AGPE+FRLFILEDA QQCLQEL+
Sbjct:  611 LLRACRRGPLASLMADMDSRTGGLALARYAHKLDAVGGARADSGRAEAGAAWGRLGLREPKKLLQNRLLVQGLLDELRGAVITANNAGPEHFRLFILEDAAQQCLQELE 719
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSB3_9PHAE2.450e-3867.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1P6_ECTSI6.170e-3266.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:57421..62991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size995
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19280.1prot_F-serratus_M_contig8.19280.1Fucus serratus malepolypeptideF-serratus_M_contig8 57732..58761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.9663093-UTR-F-serratus_M_contig8:57420..577311622932370.9663093-UTR-F-serratus_M_contig8:57420..57731Fucus serratus maleUTRF-serratus_M_contig8 57421..57731 -
1690964275.385641-UTR-F-serratus_M_contig8:57420..577311690964275.385641-UTR-F-serratus_M_contig8:57420..57731Fucus serratus maleUTRF-serratus_M_contig8 57421..57731 -
1622932371.0335317-UTR-F-serratus_M_contig8:58761..588791622932371.0335317-UTR-F-serratus_M_contig8:58761..58879Fucus serratus maleUTRF-serratus_M_contig8 58762..58879 -
1690964275.4194188-UTR-F-serratus_M_contig8:58761..588791690964275.4194188-UTR-F-serratus_M_contig8:58761..58879Fucus serratus maleUTRF-serratus_M_contig8 58762..58879 -
1622932371.0526104-UTR-F-serratus_M_contig8:62911..629911622932371.0526104-UTR-F-serratus_M_contig8:62911..62991Fucus serratus maleUTRF-serratus_M_contig8 62912..62991 -
1690964275.4284713-UTR-F-serratus_M_contig8:62911..629911690964275.4284713-UTR-F-serratus_M_contig8:62911..62991Fucus serratus maleUTRF-serratus_M_contig8 62912..62991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932371.0043755-CDS-F-serratus_M_contig8:57731..578511622932371.0043755-CDS-F-serratus_M_contig8:57731..57851Fucus serratus maleCDSF-serratus_M_contig8 57732..57851 -
1690964275.3982317-CDS-F-serratus_M_contig8:57731..578511690964275.3982317-CDS-F-serratus_M_contig8:57731..57851Fucus serratus maleCDSF-serratus_M_contig8 57732..57851 -
1622932371.0190449-CDS-F-serratus_M_contig8:58395..587611622932371.0190449-CDS-F-serratus_M_contig8:58395..58761Fucus serratus maleCDSF-serratus_M_contig8 58396..58761 -
1690964275.4105349-CDS-F-serratus_M_contig8:58395..587611690964275.4105349-CDS-F-serratus_M_contig8:58395..58761Fucus serratus maleCDSF-serratus_M_contig8 58396..58761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19280.1

>prot_F-serratus_M_contig8.19280.1 ID=prot_F-serratus_M_contig8.19280.1|Name=mRNA_F-serratus_M_contig8.19280.1|organism=Fucus serratus male|type=polypeptide|length=162bp
MVTQMNLIRAAGVDAGPPSTGVDAPDGKPRETAGRIASPFASAQARKFVR
EQLRRACRKGPPMSLLMDMDSRTGGLALARYAHALDRVGGSGSSSGRGRG
GCAGQLELRRPDVLRETMLLVQGFLDDLQGATVTSKGAGPEYFRLFILED
ACQQCLQELQR*
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mRNA from alignment at F-serratus_M_contig8:57421..62991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19280.1 ID=mRNA_F-serratus_M_contig8.19280.1|Name=mRNA_F-serratus_M_contig8.19280.1|organism=Fucus serratus male|type=mRNA|length=5571bp|location=Sequence derived from alignment at F-serratus_M_contig8:57421..62991- (Fucus serratus male)
CCTCGATAGTCTACATATTGACTTCGAGGGCTCAAGCCATGCTGAGACGT
TGCGAGGGCTGTGCGATATTCTTTAGAGTGGTGAGGATGACGCCAAACAC
AGTCCAAGAGCACCAGGCCAATACAATCGTAGTTCTGCACAAACCTTGCA
CCTCAGAGTACTTATGTACTGTCTGTACGGTCATCATTTATACAGATCAC
AGAGCACTGCAAAACTGAATATATAAAGTCTACTGTACGAAACACATGGA
CGCGGCCGCTGAACTCGGGAGGGATCCCGTAAGTAAGCAGCAGATTCAGC
CTGGGTATGAAGATGAGCAGGCTGACGCGGGACGGAACAGCCGAATCCGT
CTCGCGAGCCCAAATTCTCGTGCAGGCGTGAGCGGGGACAGGGAAATACC
CATTTACCATGTTCAGCTGACCACGAACAGAATAGGCAACCTTACCCTAC
CAGGTATGTATGTATGTATGTATATTTATTAAATTGCACATAACCGCGCA
ATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGTATTGATCCTCCC
AAGGGGGGATCAATGAAACTTATTACGAAAACCTCTGATCAGACGCGACA
AAGGGGACACACTCTCTCTACTTGTACAGTTCCTACTTGAGCCCAGACTA
CCTCGTGCTCCCCCCCCTGCTTCCTTGCTACTCTCTAGATTATCTAAATT
GGCAGATACTGGACCAACCCTTTCTATTCTACATCTTTTCCTCCTTCCAT
CGAAGTCTTTCCCGTATTTCACTTGGCGTCTACCACTATTTAGAGGTTTC
TTACGCTTCTTAGCCTCCCTTCCGCCCTCCCCGACCCCACCCTCGCTCCC
GTTCCCGTTCCCGTTCGCCTCGTACCCGTTCCCCTCTCGGCTACTTACCT
CATTTCTCTCCCCGTTCCCATCCGGTGTTCGTCTATGGGTCTCCACCTCC
GTCCCCGTCCCCGCCCCGTCCCCACTCCCGTCCCCGTTCCCATCCTGCGC
TCCTTCATCCGCCTCCCGCCCCGTCCCCGTCCCCATGACCGTTTACATCC
CCATTCCCATCCCCAACCCCGCTACCGCCTCCATTCCCGCCCCCGTTCAC
TCCTTCCTGCCCCTCGGACCCCGTTACGCCCTCGGTACGATGCGCTTGTA
CAGACACCGGACCTTGCGAGCGGAACTGTCGGGTACTCGCAAGTGCCACC
CCCTGTCTGCAGAAATGGTGACGCGTGCGGAATGAAAGTGCCTGCTGTAA
GACGAAAGAGAATCGGCGCCGAAGACGTGCTACTTCCGTCCCTTCCGCCA
GATGTTGGGACTCGTTGGAGTGTGTCTCCGACCTGTGATGTACCCGTCTG
ATGGCGAGCTCCTTGATGAGGGCATGCACGTCTGAGCCAACCTCACCACA
TGTCGACATAGCGAGGGGAAGGAGGGAGTAGGTAGCGGGGAACGAACCCC
GATACTTGTTTTTCTTCCGCTCGACTGCTTCGGCGAGGTGTTTTCCTACA
TGGCGTGCTGCATTCTCCAGATTGGAGTCGGCGCAAGGGTTGGCGATGGT
GATGTCGAGTAAGAGTGCCTTATTCTTGAGTCGTGGGTAATTGTCGAAGA
GTGCCCCCGCCTCCGTTGTGATGTCCATACGCAGCGGGTTCAGTCTGCTG
TTTTCCCCGCTAGCGCTCTGTCGGAAAGGCCATGTATCTTCAACAACAAA
CTGAACTTTACTTTCACGGAGGGATCGAGCCAGTGCCTGGTGGAGCACCC
GATTGTGAGTGAGAGAGCTCCATCCTGTCTTTGTGCAAGATATGGCGTGG
AGGCGGGTGGTTTCTTGCCGGCAACCATTGCCGTGACATATCCCACCAAT
ACGTTCCGCCGCGTCATGCGACCCCAGGCTCCTGCCTAAGGTTTCCCTCC
ACAGGGATCCCTCCATTGTGTCTTCTTCTGAGACCCCCAGGCATTCCACG
AATGCCATGGCGCCCTTCTCCCGCGCTCCCCTAAACCTCACCATAGCTCT
TTTCGACTGCGCACTTTCCAGAGTTTGGAGATCCTGCAGGAGCTTCTTCC
CACGGTGTGCGTGGAATGTATGTATGTATAGTCACACATAAGTCATATAA
TCTCGTTTTTGAAAAATCTGAACGCATCTAAACCATCGCCTGTGGACCAT
AAATAGTCTAGACTAGAGCATGCCATCAATATCGTCACCGTTTATCACCT
GCAAAACACTGCATTGCTGTGCACCATGAATCACATCAACGCAAAAGAAA
AGGCAACCAACCAACCAACCAGCAACCCTCAGAACCACGGTTCAATAATC
GCGGGCTTTGCCTGCCTAATCAACCTTCTAGTCTAAAAACCCTGTCTCGG
AGCCTAAAAAGTTTGCCCAAAGTCTATTATTAATAATATTCTAGAGTGCT
TGATTTTTAGTTGTTTTACTAAATATACCAGGTATATCAGTCTCAAGGAC
CTGTTGTAATTATTTAGCCCTCACATGGAGTTGTTGTTGTTGTATGTTGT
ATTCTTCACATTAACCGATCGGGCCTCAACCATACCCAGTAATATACGTG
GATGCCAATTCGGTACGTGGTCACAAAGAGGTACAAAGGTCAACGGGCCA
CATCATGGTGACAACCTGCTACTCAGACCAACAGGGATCCAAATCGCGAC
AAAAAGCTCAGAAGGTCTAGGTGCGTCCTGTATTTTCTTCAAAAAAAGTC
ATGCGACTCTACAAGCAATAGTACCGACCAATCAAAACGGTTCATCAAAC
ATCCTTCCTCCATATCGAGAGCAACCTCAATGGACTCGGATTGTTATCGC
CTACCCACGACCAGCGTTCTCAGCAAAAAACCGGAAGAATTACGCTCCAA
CCAGTTTTGATCAACAAAAAGTCCAAGTTTCTCAAGGCCACAAACTCGTA
CAGAAATAAGGAAAATTGAAATACCGAGGTCCATGATGGTGGAGGCCTTG
AGCTGGTGAAGCCGGCGCGAGCCAGTATCCAGCCGTCCGAAGCCCTGTGC
ATCCCTGAAAAAATCCCCACGAATCTTGTCCGTTCGCCGCTCCTTGTGGC
CCTCGTAGGAAGAAAAATGACCGTGGTCAGATGTCAGCTTTTCCTCAGAA
ACCTCCCGTTTCACGCCTGTGATTCTCGCGCACAGGGGTTGGGCCTTCCC
CTGGCTCGTCGACGATCGAGCTGCCCTCCGCCTTCGCCTAATCTGGTGCG
TACCCACCCGGTAGAGCACTACCAGGCTCTCCGCGACAGTGCTCCCTGCC
TCTCGCGTGCCGCCACTCTCCCGAAGGCCACCAAATTGAGGCTCGGAAGA
GGCGCGCACCTGGGAACACCATCATCTTCAGCCAACCATACCGCCGCCGC
GTCTCAACGTACAGGCTGAATCGCGAAGGCAGCCAGCCAGTTGGCTGCAC
TTCTTGAAGGCGAGTCCGGCCCTACACCCGCCGGAAAGACCCTCCCACAC
TCATACCCCGAAATCAGGTTTCGGAGGGAGAGGGCACGAGAGTATAATGT
GTAGATGGCCCCCCGTCCTACGTATAAATATACGCTAGATAAGGCACCCT
GTCCTACTGTCGACGCCAGATAAGGGGGTGACCCCTCGGGTGTGGTTCGT
ATCAATGGTTCTGGGGGTGGCCGATGGACGACACACGGGACCCGGGACGG
TTTCCAACCTCTCAAGACTTGAGGAGGTTGGGAAGGAGGTTCAGAAGTAA
GAGTGAGGAGAGGGGGATTTGCCTCTCTGCTCCTCTTTGCCCGCTCTCTG
ATCTACCGGGGTCGATCTCTTTCGCGCCCCGCCCTCCCCGGTCAATTTTG
AATTCTTCTCTCGGCCCACGACAACCACAACTATTTTTCCCTCTTCCAGT
CACAGCACTGACTGACAGACTGACTGACTTGACTCAAGAAGAACACACTA
CCAGTATAATATTAATAGTTGTTTTGTTTTCGTCTTTTTTGCTTTCACTG
AAGCCGCGGCCCTTCGTTCAATCGTTTTTCATTCTTCGATATGCATGCGA
TCGATCGCCCCGACAGCCACACGCAGTTACCTAACAACTGTCTGTCTGCG
TCCTTTTTAGTATTTTTTTCTAACTTTTTTGTTTGTTTGGACGTACGTGT
CGTTTTTTACAGGGATGACGATCGTTCTTTCGAGGACCGAGAGGCGAGCT
CCTGGCGACGAGTGGAGAATTTTCGAACAGACCCCTCTCGTGCTGTTGTG
CCCAAGGACACCCGCGCTCGCTGCTCGGAAATGGTGACACAAATGAACTT
GATAAGAGCCGCGGGCGTCGATGCGGGTCCACCTTCGACTGGTGTTGACG
CTCCTGACGGGAAGCCGCGAGAAACCGCAGGGAGGATAGCGTCGCCTTTC
GCGTCCGCGCAGGCTAGAAAATTTGTGCGTGAGCAGCTCCGGCGAGCGTG
TCGGAAGGGCCCACCGATGTCGCTACTCATGGACATGGATAGCCGTACGG
GCGGCCTCGCGTTGGCACGGTACGCACACGCTTTGGATCGAGTTGGCGGC
AGTGGCAGTAGCAGTGGTAGGGGACGTGGTGGCTGTGCGGGGCAACTGGA
GCTTCGCCGACCGGATGTATTGCGCGAAACCATGCTCCTCGTCCAGGTGA
CTCACCGATCTAATCGCATCGAGAGTGTATATGGTCAGCATGCTGCGTCG
CACCGACTGGTCTTGGTCGTTTCGCGCGAGTTCGCCCTCGTTCTACGAAA
CTGTGATTATGTGATTATACGGCGCACGGAGTTTACCGCTCGAAGTGGCT
GCCGTTCGAGTCCACAGTCCAATCACATGCGTTATTGTTGAGCTTTTTGC
GCGTCCCAAGGTATTTTCGTAGCATCGCTCCCCTCCCCTCTCCCCTCCCC
GCGGAACGCCTCTGTCTGGTACAAAGTACTTGTAATATGGATCGTGTTGT
TCTCCGGATGTCGTATAGAACATTGAGTATGTGTACATTGCTATTAATTG
CTTTTTTCTGCTTTTTTCTACGGCGAGACGCGCGACCTGTCATATTTTTG
TAAGGTACTGGTATGGTACGCTGTATAGAGTATTAATATAATATAATATA
ATATAATACCTGGTAGTACTCTTTTTTACTTGTACTTGTGTATGCTATTA
ACAATCACGCCCACACCCAACTCGCAACCCAATCTCGCAGGGCTTCCTGG
ACGACCTACAAGGGGCTACGGTCACCAGCAAGGGTGCAGGCCCGGAGTAC
TTTAGACTTTTCATACTCGAAGATGCCTGCCAGCAATGCCTACAAGAGCT
GCAACGGTAGATAGAGACCTCGATAGTACTTGGAGTACAGTAAATGGTAC
CTGGTAAACGTTTTAGCTTTTTTTCGTGGCGGGACGCGGGAATTATTGTG
GAACCGTGCGTTATCGTTATAATATTAATATTAATAGTAAAAGTTGAAGG
GACCAATGATTGAGACGAATCAAGTGTAGGAGTGCTTGACGGGCATCTCG
ATAAAAAAAATCCAAGGGCGTGAGCTAGCTGTGGAGGCTGGCACTGTACT
TGTACTGGTAGTCTAGGTTTTTGCCTGTTTTGTCTGTTTTTCTGATCCCC
AGCTGATGGTTTTCTACCATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:57421..62991-

>mRNA_F-serratus_M_contig8.19280.1 ID=mRNA_F-serratus_M_contig8.19280.1|Name=mRNA_F-serratus_M_contig8.19280.1|organism=Fucus serratus male|type=CDS|length=972bp|location=Sequence derived from alignment at F-serratus_M_contig8:57421..62991- (Fucus serratus male)
ATGGTGACACAAATGAACTTGATAAGAGCCGCGGGCGTCGATGCGGGTCC
ACCTTCGACTGGTGTTGACGCTCCTGACGGGAAGCCGCGAGAAACCGCAG
GGAGGATAGCGTCGCCTTTCGCGTCCGCGCAGGCTAGAAAATTTGTGCGT
GAGCAGCTCCGGCGAGCGTGTCGGAAGGGCCCACCGATGTCGCTACTCAT
GGACATGGATAGCCGTACGGGCGGCCTCGCGTTGGCACGGTACGCACACG
CTTTGGATCGAGTTGGCGGCAGTGGCAGTAGCAGTGGTAGGGGACGTGGT
GGCTGTGCGGGGCAACTGGAGCTTCGCCGACCGGATGTATTGCGCGAAAC
CATGCTCCTCGTCCAGATGGTGACACAAATGAACTTGATAAGAGCCGCGG
GCGTCGATGCGGGTCCACCTTCGACTGGTGTTGACGCTCCTGACGGGAAG
CCGCGAGAAACCGCAGGGAGGATAGCGTCGCCTTTCGCGTCCGCGCAGGC
TAGAAAATTTGTGCGTGAGCAGCTCCGGCGAGCGTGTCGGAAGGGCCCAC
CGATGTCGCTACTCATGGACATGGATAGCCGTACGGGCGGCCTCGCGTTG
GCACGGTACGCACACGCTTTGGATCGAGTTGGCGGCAGTGGCAGTAGCAG
TGGTAGGGGACGTGGTGGCTGTGCGGGGCAACTGGAGCTTCGCCGACCGG
ATGTATTGCGCGAAACCATGCTCCTCGTCCAGGGCTTCCTGGACGACCTA
CAAGGGGCTACGGTCACCAGCAAGGGTGCAGGCCCGGAGTACTTTAGACT
TTTCATACTCGAAGATGCCTGCCAGCAATGCCTACAAGAGCTGCAACGGT
AGGGCTTCCTGGACGACCTACAAGGGGCTACGGTCACCAGCAAGGGTGCA
GGCCCGGAGTACTTTAGACTTTTCATACTCGAAGATGCCTGCCAGCAATG
CCTACAAGAGCTGCAACGGTAG
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