mRNA_F-serratus_M_contig8.19326.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19326.1
Unique NamemRNA_F-serratus_M_contig8.19326.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:855228..855560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size334
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.6888187-CDS-F-serratus_M_contig8:855227..8555541622932370.6888187-CDS-F-serratus_M_contig8:855227..855554Fucus serratus maleCDSF-serratus_M_contig8 855228..855554 +
1690964275.281631-CDS-F-serratus_M_contig8:855227..8555541690964275.281631-CDS-F-serratus_M_contig8:855227..855554Fucus serratus maleCDSF-serratus_M_contig8 855228..855554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.704281-UTR-F-serratus_M_contig8:855554..8555601622932370.704281-UTR-F-serratus_M_contig8:855554..855560Fucus serratus maleUTRF-serratus_M_contig8 855555..855560 +
1690964275.2954779-UTR-F-serratus_M_contig8:855554..8555601690964275.2954779-UTR-F-serratus_M_contig8:855554..855560Fucus serratus maleUTRF-serratus_M_contig8 855555..855560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19326.1prot_F-serratus_M_contig8.19326.1Fucus serratus malepolypeptideF-serratus_M_contig8 855228..855554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19326.1

>prot_F-serratus_M_contig8.19326.1 ID=prot_F-serratus_M_contig8.19326.1|Name=mRNA_F-serratus_M_contig8.19326.1|organism=Fucus serratus male|type=polypeptide|length=109bp
AFLAAFLRGLATLLSSGVLPRLRLLLLLQLLADSFARYLFSAIVLDPCPA
TSARTLSLTRRRCSSALRFRQLLPALCRALSRGGRASRALIASCLDRAIA
IVLDAATS*
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mRNA from alignment at F-serratus_M_contig8:855228..855560+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19326.1 ID=mRNA_F-serratus_M_contig8.19326.1|Name=mRNA_F-serratus_M_contig8.19326.1|organism=Fucus serratus male|type=mRNA|length=333bp|location=Sequence derived from alignment at F-serratus_M_contig8:855228..855560+ (Fucus serratus male)
GCATTTCTGGCTGCCTTCCTGCGCGGCCTTGCCACCCTTCTCTCCTCCGG
CGTCCTTCCGCGTCTTCGCCTGCTGCTTCTGCTGCAACTTCTCGCCGACA
GCTTTGCCAGATATCTCTTCTCGGCCATCGTCCTTGACCCCTGTCCCGCC
ACCAGCGCCCGAACCCTGAGTCTTACCCGACGCCGCTGCTCGAGCGCTCT
TCGGTTCCGCCAACTCTTGCCAGCCCTCTGCCGTGCGCTTTCTCGCGGCG
GCCGTGCCTCTCGAGCTCTCATCGCCAGCTGCCTCGACAGAGCCATCGCC
ATTGTCTTGGATGCCGCCACCTCCTAATCCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:855228..855560+

>mRNA_F-serratus_M_contig8.19326.1 ID=mRNA_F-serratus_M_contig8.19326.1|Name=mRNA_F-serratus_M_contig8.19326.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig8:855228..855560+ (Fucus serratus male)
GCATTTCTGGCTGCCTTCCTGCGCGGCCTTGCCACCCTTCTCTCCTCCGG
CGTCCTTCCGCGTCTTCGCCTGCTGCTTCTGCTGCAACTTCTCGCCGACA
GCTTTGCCAGATATCTCTTCTCGGCCATCGTCCTTGACCCCTGTCCCGCC
ACCAGCGCCCGAACCCTGAGTCTTACCCGACGCCGCTGCTCGAGCGCTCT
TCGGTTCCGCCAACTCTTGCCAGCCCTCTGCCGTGCGCTTTCTCGCGGCG
GCCGTGCCTCTCGAGCTCTCATCGCCAGCTGCCTCGACAGAGCCATCGCC
ATTGTCTTGGATGCCGCCACCTCCTAAGCATTTCTGGCTGCCTTCCTGCG
CGGCCTTGCCACCCTTCTCTCCTCCGGCGTCCTTCCGCGTCTTCGCCTGC
TGCTTCTGCTGCAACTTCTCGCCGACAGCTTTGCCAGATATCTCTTCTCG
GCCATCGTCCTTGACCCCTGTCCCGCCACCAGCGCCCGAACCCTGAGTCT
TACCCGACGCCGCTGCTCGAGCGCTCTTCGGTTCCGCCAACTCTTGCCAG
CCCTCTGCCGTGCGCTTTCTCGCGGCGGCCGTGCCTCTCGAGCTCTCATC
GCCAGCTGCCTCGACAGAGCCATCGCCATTGTCTTGGATGCCGCCACCTC
CTAA
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