mRNA_F-serratus_M_contig8.19308.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19308.1
Unique NamemRNA_F-serratus_M_contig8.19308.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:648005..648736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size717
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.6282618-UTR-F-serratus_M_contig8:648004..6480191622932370.6282618-UTR-F-serratus_M_contig8:648004..648019Fucus serratus maleUTRF-serratus_M_contig8 648005..648019 +
1690964275.2599592-UTR-F-serratus_M_contig8:648004..6480191690964275.2599592-UTR-F-serratus_M_contig8:648004..648019Fucus serratus maleUTRF-serratus_M_contig8 648005..648019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.6418762-CDS-F-serratus_M_contig8:648019..6487361622932370.6418762-CDS-F-serratus_M_contig8:648019..648736Fucus serratus maleCDSF-serratus_M_contig8 648020..648736 +
1690964275.27187-CDS-F-serratus_M_contig8:648019..6487361690964275.27187-CDS-F-serratus_M_contig8:648019..648736Fucus serratus maleCDSF-serratus_M_contig8 648020..648736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19308.1prot_F-serratus_M_contig8.19308.1Fucus serratus malepolypeptideF-serratus_M_contig8 648020..648736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19308.1

>prot_F-serratus_M_contig8.19308.1 ID=prot_F-serratus_M_contig8.19308.1|Name=mRNA_F-serratus_M_contig8.19308.1|organism=Fucus serratus male|type=polypeptide|length=239bp
MLPVSQSSLVEGASGGASAEGIQLMQQYSAGTGRHPPWPGYLCGPPLTAL
TQQLQQQLQHQHQQDGRQRLVDASMQMVASGGRVGGEGLVTQVSGGGTSA
PGGSYRENTESKQHQQQSQQGHSQEIVVIDKQQQAWGSPNPSSAVGSCSA
EEAELLVAAADAGRRTAAACQSASSPFERTGDDGGEKSPLSSVAIAGKAT
GAPPQTSRTTGEGNGTWSSSPADRSAASGKSRTEHAGGP
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mRNA from alignment at F-serratus_M_contig8:648005..648736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19308.1 ID=mRNA_F-serratus_M_contig8.19308.1|Name=mRNA_F-serratus_M_contig8.19308.1|organism=Fucus serratus male|type=mRNA|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig8:648005..648736+ (Fucus serratus male)
GTTGCTATAGGCGGTATGTTGCCCGTTTCTCAGAGTAGCCTTGTCGAGGG
AGCAAGCGGCGGTGCCTCTGCCGAGGGCATACAGTTGATGCAGCAGTACT
CGGCGGGGACCGGTCGCCACCCGCCGTGGCCTGGGTACTTGTGCGGGCCG
CCGCTGACGGCGCTCACCCAGCAGCTGCAGCAGCAGCTGCAGCATCAGCA
TCAGCAAGACGGTCGACAACGGCTAGTCGATGCCAGCATGCAGATGGTTG
CATCGGGTGGTCGTGTTGGCGGCGAGGGGCTGGTGACGCAAGTGAGTGGT
GGCGGCACGTCTGCTCCCGGTGGTTCCTATCGTGAAAACACGGAGAGCAA
GCAGCATCAGCAGCAGTCGCAGCAGGGACATTCCCAGGAGATTGTGGTCA
TCGACAAGCAGCAGCAGGCGTGGGGATCGCCCAACCCTTCCAGCGCCGTC
GGCTCATGCTCTGCTGAGGAGGCCGAGCTCCTCGTCGCCGCTGCTGATGC
GGGCAGGCGGACGGCGGCGGCGTGCCAGTCCGCATCTTCCCCCTTCGAGC
GGACGGGAGACGACGGTGGCGAGAAGAGCCCTCTCTCCTCGGTTGCAATC
GCGGGGAAAGCGACGGGAGCGCCGCCGCAGACGTCGAGGACAACAGGTGA
AGGGAACGGAACGTGGTCCTCTTCCCCTGCCGATCGCTCAGCGGCTAGCG
GAAAATCCAGGACGGAGCACGCGGGTGGCCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:648005..648736+

>mRNA_F-serratus_M_contig8.19308.1 ID=mRNA_F-serratus_M_contig8.19308.1|Name=mRNA_F-serratus_M_contig8.19308.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig8:648005..648736+ (Fucus serratus male)
ATGTTGCCCGTTTCTCAGAGTAGCCTTGTCGAGGGAGCAAGCGGCGGTGC
CTCTGCCGAGGGCATACAGTTGATGCAGCAGTACTCGGCGGGGACCGGTC
GCCACCCGCCGTGGCCTGGGTACTTGTGCGGGCCGCCGCTGACGGCGCTC
ACCCAGCAGCTGCAGCAGCAGCTGCAGCATCAGCATCAGCAAGACGGTCG
ACAACGGCTAGTCGATGCCAGCATGCAGATGGTTGCATCGGGTGGTCGTG
TTGGCGGCGAGGGGCTGGTGACGCAAGTGAGTGGTGGCGGCACGTCTGCT
CCCGGTGGTTCCTATCGTGAAAACACGGAGAGCAAGCAGCATCAGCAGCA
GTCGCAGCAGGGACATTCCCAGGAGATTGTGGTCATCGACAAGCAGCAGC
AGGCGTGGGGATCGCCCAACCCTTCCAGCGCCGTCGGCTCATGCTCTGCT
GAGGAGGCCGAGCTCCTCGTCGCCGCTGCTGATGCGGGCAGGCGGACGGC
GGCGGCGTGCCAGTCCGCATCTTCCCCCTTCGAGCGGACGGGAGACGACG
GTGGCGAGAAGAGCCCTCTCTCCTCGGTTGCAATCGCGGGGAAAGCGACG
GGAGCGCCGCCGCAGACGTCGAGGACAACAGGTGAAGGGAACGGAACGTG
GTCCTCTTCCCCTGCCGATCGCTCAGCGGCTAGCGGAAAATCCAGGACGG
AGCACGCGGGTGGCCCTATGTTGCCCGTTTCTCAGAGTAGCCTTGTCGAG
GGAGCAAGCGGCGGTGCCTCTGCCGAGGGCATACAGTTGATGCAGCAGTA
CTCGGCGGGGACCGGTCGCCACCCGCCGTGGCCTGGGTACTTGTGCGGGC
CGCCGCTGACGGCGCTCACCCAGCAGCTGCAGCAGCAGCTGCAGCATCAG
CATCAGCAAGACGGTCGACAACGGCTAGTCGATGCCAGCATGCAGATGGT
TGCATCGGGTGGTCGTGTTGGCGGCGAGGGGCTGGTGACGCAAGTGAGTG
GTGGCGGCACGTCTGCTCCCGGTGGTTCCTATCGTGAAAACACGGAGAGC
AAGCAGCATCAGCAGCAGTCGCAGCAGGGACATTCCCAGGAGATTGTGGT
CATCGACAAGCAGCAGCAGGCGTGGGGATCGCCCAACCCTTCCAGCGCCG
TCGGCTCATGCTCTGCTGAGGAGGCCGAGCTCCTCGTCGCCGCTGCTGAT
GCGGGCAGGCGGACGGCGGCGGCGTGCCAGTCCGCATCTTCCCCCTTCGA
GCGGACGGGAGACGACGGTGGCGAGAAGAGCCCTCTCTCCTCGGTTGCAA
TCGCGGGGAAAGCGACGGGAGCGCCGCCGCAGACGTCGAGGACAACAGGT
GAAGGGAACGGAACGTGGTCCTCTTCCCCTGCCGATCGCTCAGCGGCTAG
CGGAAAATCCAGGACGGAGCACGCGGGTGGCCCT
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