mRNA_F-serratus_M_contig8.19307.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19307.1
Unique NamemRNA_F-serratus_M_contig8.19307.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:629149..629545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size398
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932370.581781-CDS-F-serratus_M_contig8:629148..6295441622932370.581781-CDS-F-serratus_M_contig8:629148..629544Fucus serratus maleCDSF-serratus_M_contig8 629149..629544 +
1690964275.2441201-CDS-F-serratus_M_contig8:629148..6295441690964275.2441201-CDS-F-serratus_M_contig8:629148..629544Fucus serratus maleCDSF-serratus_M_contig8 629149..629544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19307.1prot_F-serratus_M_contig8.19307.1Fucus serratus malepolypeptideF-serratus_M_contig8 629149..629544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19307.1

>prot_F-serratus_M_contig8.19307.1 ID=prot_F-serratus_M_contig8.19307.1|Name=mRNA_F-serratus_M_contig8.19307.1|organism=Fucus serratus male|type=polypeptide|length=132bp
ESFGWSNQRGPKTSQACYSYPRCNLNLVRLFRFSLLLPLVGRILFFLRPR
GHKPTTTFTYRAVPNPRVKCGGAPVPRDAKKTNIICHAVRPLFLLPPGPR
FPAFSSSPDMTLLGSLWSPMRSSAPTHNNLLV
back to top

mRNA from alignment at F-serratus_M_contig8:629149..629545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19307.1 ID=mRNA_F-serratus_M_contig8.19307.1|Name=mRNA_F-serratus_M_contig8.19307.1|organism=Fucus serratus male|type=mRNA|length=397bp|location=Sequence derived from alignment at F-serratus_M_contig8:629149..629545+ (Fucus serratus male)
GAGTCCTTCGGTTGGTCCAATCAACGCGGCCCGAAAACGTCTCAAGCTTG
CTACAGTTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCT
CTCTTCTTCTGCCGTTGGTTGGACGCATTCTCTTCTTCCTTCGCCCACGC
GGCCATAAACCTACAACCACCTTCACGTACCGTGCTGTACCAAACCCCAG
GGTCAAGTGCGGCGGTGCTCCAGTCCCCCGTGATGCCAAAAAGACGAACA
TCATCTGCCACGCAGTCCGTCCACTCTTTCTCCTTCCCCCCGGTCCACGT
TTTCCCGCGTTCTCGAGCTCTCCCGACATGACCCTCTTGGGTAGCCTGTG
GTCACCCATGCGGAGCAGCGCCCCCACCCACAACAACCTCCTCGTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig8:629149..629545+

>mRNA_F-serratus_M_contig8.19307.1 ID=mRNA_F-serratus_M_contig8.19307.1|Name=mRNA_F-serratus_M_contig8.19307.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig8:629149..629545+ (Fucus serratus male)
GAGTCCTTCGGTTGGTCCAATCAACGCGGCCCGAAAACGTCTCAAGCTTG
CTACAGTTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCT
CTCTTCTTCTGCCGTTGGTTGGACGCATTCTCTTCTTCCTTCGCCCACGC
GGCCATAAACCTACAACCACCTTCACGTACCGTGCTGTACCAAACCCCAG
GGTCAAGTGCGGCGGTGCTCCAGTCCCCCGTGATGCCAAAAAGACGAACA
TCATCTGCCACGCAGTCCGTCCACTCTTTCTCCTTCCCCCCGGTCCACGT
TTTCCCGCGTTCTCGAGCTCTCCCGACATGACCCTCTTGGGTAGCCTGTG
GTCACCCATGCGGAGCAGCGCCCCCACCCACAACAACCTCCTCGTGGAGT
CCTTCGGTTGGTCCAATCAACGCGGCCCGAAAACGTCTCAAGCTTGCTAC
AGTTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTCTCTCT
TCTTCTGCCGTTGGTTGGACGCATTCTCTTCTTCCTTCGCCCACGCGGCC
ATAAACCTACAACCACCTTCACGTACCGTGCTGTACCAAACCCCAGGGTC
AAGTGCGGCGGTGCTCCAGTCCCCCGTGATGCCAAAAAGACGAACATCAT
CTGCCACGCAGTCCGTCCACTCTTTCTCCTTCCCCCCGGTCCACGTTTTC
CCGCGTTCTCGAGCTCTCCCGACATGACCCTCTTGGGTAGCCTGTGGTCA
CCCATGCGGAGCAGCGCCCCCACCCACAACAACCTCCTCGTG
back to top