mRNA_F-serratus_M_contig8.19305.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig8.19305.1
Unique NamemRNA_F-serratus_M_contig8.19305.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.340e-25
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = -3 
Query:   43 LTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 309
            LTP M +FN+RMS CRV+VEW F E++  W   S    K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS  FG+ PPT E+Y+ +
Sbjct:   96 LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSM---KPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 181
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.390e-25
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = -3 
Query:   43 SNSALTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 321
            S   LTP M +FN+RMS CRV+VEW F E++  W   S    K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS  FG+ PPT E+Y+ +
Sbjct:  141 SAGPLTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSM---KPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.150e-25
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -3 
Query:   43 SNSALTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 321
            S   LTP M +FNQRMS CRV+VEW F E++  W        K QQK LLSPV  QYRV+  L+N+H+CLNGGNQIS  F ++PPT E+YL +
Sbjct:  319 SYGPLTPEMADFNQRMSHCRVTVEWGFKEMTSKWAFVDM---KSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQPPTLEEYLKV 408
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BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.500e-25
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = -3 
Query:   43 NSALTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 318
            N  LTP M +FN+ MS CRV+VEW F E++  W        K QQK LLSPVATQY+V+  L+N H+CLNGGNQIS  FG++PPT E+YL +
Sbjct:  332 NGPLTPAMRKFNKSMSQCRVTVEWGFKEMTSKWAFVDM---KCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 420
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 8.560e-25
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = -3 
Query:   43 LTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 309
            LTP M +FN+RMS CRV+VEW F E++  W   S    K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS  FG+ PPT E+Y+ +
Sbjct:  190 LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSM---KPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5K5I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 9.070e-25
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = -3 
Query:   43 MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 297
            M  FN+ MS CRV+VEW F +++  W        K QQK LLSPVATQY+V+  L+N H+CLNGGNQIS  FG++PPT E+YL +
Sbjct:    1 MRNFNKSMSQCRVTVEWGFKDMTSKWAFVDM---KCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 82
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 9.360e-25
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = -3 
Query:   43 LTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 309
            LTP + +FN+R+SACRV+VEW F E+   W   +    K QQK LLSPVA QYRV+  L+N H+CLNGGN+IS  FG+ PP+ E+YLG+
Sbjct:  612 LTPEVADFNKRISACRVTVEWGFKEICNYWAFVNM---KQQQKSLLSPVAVQYRVATLLSNWHSCLNGGNEISQYFGVGPPSFEEYLGV 697
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5K406_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K406_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.400e-24
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = -3 
Query:   43 LTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 309
            LTP M +FN+RMS CRV+VEW F E++  W   S    K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS  FG+ PP  E+Y+ +
Sbjct:  132 LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSM---KPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPAFEEYVAV 217
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.190e-24
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = -3 
Query:   43 LTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 309
            LTP M +FN+RMS CRV+VEW F E++  W   S    K QQK LLSPVA QYRV+  L+N H+C+NGGN+IS  FG+ PPT E+Y+ +
Sbjct:  245 LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSM---KPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 330
[Close]
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.580e-24
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = -3 
Query:   43 NSALTP*MCEFNQRMSACRVSVEWAFGEVSRLWVRRSRCVYKHQQKCLLSPVATQYRVSAFLTNLHTCLNGGNQISD*FGMKPPTPEQYLGI 318
            N  LTP M  FN+ MS CRV+VEW F E++  W        K Q K LLSPVATQY+V+  L+N H+CLNGGNQIS  FG++PPT E+YL +
Sbjct:  253 NGPLTPAMRNFNKSMSRCRVTVEWGFKEMTSKWAFIDM---KCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKL 341
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig8.19305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK0_9PHAE1.340e-2556.18DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE2.390e-2554.84DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KH29_9PHAE4.150e-2555.91DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JS57_9PHAE6.500e-2556.52DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5JR24_9PHAE8.560e-2556.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K5I2_9PHAE9.070e-2555.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLS3_9PHAE9.360e-2556.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K406_9PHAE1.400e-2455.06DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE2.190e-2456.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JM46_9PHAE2.580e-2455.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig8contigF-serratus_M_contig8:595843..596198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size323
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig8.19305.1prot_F-serratus_M_contig8.19305.1Fucus serratus malepolypeptideF-serratus_M_contig8 595864..596106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.0235457-UTR-F-serratus_M_contig8:595842..5958631622932369.0235457-UTR-F-serratus_M_contig8:595842..595863Fucus serratus maleUTRF-serratus_M_contig8 595843..595863 +
1690964274.8232603-UTR-F-serratus_M_contig8:595842..5958631690964274.8232603-UTR-F-serratus_M_contig8:595842..595863Fucus serratus maleUTRF-serratus_M_contig8 595843..595863 +
1622932369.1184225-UTR-F-serratus_M_contig8:596106..5961981622932369.1184225-UTR-F-serratus_M_contig8:596106..596198Fucus serratus maleUTRF-serratus_M_contig8 596107..596198 +
1690964274.8749309-UTR-F-serratus_M_contig8:596106..5961981690964274.8749309-UTR-F-serratus_M_contig8:596106..596198Fucus serratus maleUTRF-serratus_M_contig8 596107..596198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932369.045142-CDS-F-serratus_M_contig8:595863..5960401622932369.045142-CDS-F-serratus_M_contig8:595863..596040Fucus serratus maleCDSF-serratus_M_contig8 595864..596040 +
1690964274.8362994-CDS-F-serratus_M_contig8:595863..5960401690964274.8362994-CDS-F-serratus_M_contig8:595863..596040Fucus serratus maleCDSF-serratus_M_contig8 595864..596040 +
1622932369.0675154-CDS-F-serratus_M_contig8:596059..5960791622932369.0675154-CDS-F-serratus_M_contig8:596059..596079Fucus serratus maleCDSF-serratus_M_contig8 596060..596079 +
1690964274.848182-CDS-F-serratus_M_contig8:596059..5960791690964274.848182-CDS-F-serratus_M_contig8:596059..596079Fucus serratus maleCDSF-serratus_M_contig8 596060..596079 +
1622932369.096169-CDS-F-serratus_M_contig8:596093..5961061622932369.096169-CDS-F-serratus_M_contig8:596093..596106Fucus serratus maleCDSF-serratus_M_contig8 596094..596106 +
1690964274.8617244-CDS-F-serratus_M_contig8:596093..5961061690964274.8617244-CDS-F-serratus_M_contig8:596093..596106Fucus serratus maleCDSF-serratus_M_contig8 596094..596106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig8.19305.1

>prot_F-serratus_M_contig8.19305.1 ID=prot_F-serratus_M_contig8.19305.1|Name=mRNA_F-serratus_M_contig8.19305.1|organism=Fucus serratus male|type=polypeptide|length=70bp
MRRDRSLNSQVLLGRRRFHAKLIGNLITPVQACMEISEECGDAVLGSYWA
EKALLLVLINAPRPSDPQT*
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mRNA from alignment at F-serratus_M_contig8:595843..596198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig8.19305.1 ID=mRNA_F-serratus_M_contig8.19305.1|Name=mRNA_F-serratus_M_contig8.19305.1|organism=Fucus serratus male|type=mRNA|length=356bp|location=Sequence derived from alignment at F-serratus_M_contig8:595843..596198+ (Fucus serratus male)
CCATCGCTCCGTCTGCGCCAAATGCGACGTGATCGGAGTCTAAATTCCCA
AGTACTGCTCGGGCGTCGGCGGTTTCATGCCAAATTAATCGGAAATCTGA
TTACCCCCGTTCAGGCATGTATGGAGATTAGTGAGGAATGCGGAGACGCG
GTACTGGGTAGCTACTGGGCTGAGAAGGCACTTTTGCTGGTGCTTATAGT
TTTTGAAGAAAATACAGAACGCACCTAGACCTTCTGAGTTGTTGCAGAAA
GCCCACAAACGTGATACCTCTCCGAAGGCCCACTCGACGGACACTCGGCA
AGCGCTCATCCTCTGATTGAACTCACACATCTAAGGAGTGAGAGCGGAAT
TACTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig8:595843..596198+

>mRNA_F-serratus_M_contig8.19305.1 ID=mRNA_F-serratus_M_contig8.19305.1|Name=mRNA_F-serratus_M_contig8.19305.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig8:595843..596198+ (Fucus serratus male)
ATGCGACGTGATCGGAGTCTAAATTCCCAAGTACTGCTCGGGCGTCGGCG
GTTTCATGCCAAATTAATCGGAAATCTGATTACCCCCGTTCAGGCATGTA
TGGAGATTAGTGAGGAATGCGGAGACGCGGTACTGGGTAGCTACTGGGCT
GAGAAGGCACTTTTGCTGGTGCTTATAATGCGACGTGATCGGAGTCTAAA
TTCCCAAGTACTGCTCGGGCGTCGGCGGTTTCATGCCAAATTAATCGGAA
ATCTGATTACCCCCGTTCAGGCATGTATGGAGATTAGTGAGGAATGCGGA
GACGCGGTACTGGGTAGCTACTGGGCTGAGAAGGCACTTTTGCTGGTGCT
TATAAACGCACCTAGACCTTCTGAAACGCACCTAGACCTTCTGACCCACA
AACGTGACCCACAAACGTGA
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