mRNA_F-serratus_M_contig798.19276.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig798.19276.1
Unique NamemRNA_F-serratus_M_contig798.19276.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig798.19276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig798contigF-serratus_M_contig798:116614..117079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932368.3256273-CDS-F-serratus_M_contig798:116613..1169641622932368.3256273-CDS-F-serratus_M_contig798:116613..116964Fucus serratus maleCDSF-serratus_M_contig798 116614..116964 +
1690964274.4610214-CDS-F-serratus_M_contig798:116613..1169641690964274.4610214-CDS-F-serratus_M_contig798:116613..116964Fucus serratus maleCDSF-serratus_M_contig798 116614..116964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932368.3412683-UTR-F-serratus_M_contig798:116964..1170791622932368.3412683-UTR-F-serratus_M_contig798:116964..117079Fucus serratus maleUTRF-serratus_M_contig798 116965..117079 +
1690964274.472381-UTR-F-serratus_M_contig798:116964..1170791690964274.472381-UTR-F-serratus_M_contig798:116964..117079Fucus serratus maleUTRF-serratus_M_contig798 116965..117079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig798.19276.1prot_F-serratus_M_contig798.19276.1Fucus serratus malepolypeptideF-serratus_M_contig798 116614..116964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig798.19276.1

>prot_F-serratus_M_contig798.19276.1 ID=prot_F-serratus_M_contig798.19276.1|Name=mRNA_F-serratus_M_contig798.19276.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MDAGELLSVVPYALVRRPGFFPGFLDGESNACSAANLLWTGTVTFCCMVK
FHQNGPSCWHLSGEQRARQDKEGLENTVCMKLSVVLVHERPLQQLLELSC
EAFVLVLCGGLSCLTR*
back to top

mRNA from alignment at F-serratus_M_contig798:116614..117079+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig798.19276.1 ID=mRNA_F-serratus_M_contig798.19276.1|Name=mRNA_F-serratus_M_contig798.19276.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig798:116614..117079+ (Fucus serratus male)
ATGGACGCTGGTGAACTGCTTTCTGTGGTACCCTACGCATTGGTGCGGCG
CCCGGGGTTCTTTCCTGGATTTTTGGACGGTGAGTCGAATGCATGTTCTG
CTGCCAATCTGTTGTGGACAGGGACTGTAACCTTCTGTTGCATGGTTAAG
TTCCACCAGAATGGACCGAGCTGTTGGCACCTGAGTGGGGAGCAGAGAGC
TCGGCAAGATAAGGAGGGACTGGAGAATACAGTCTGTATGAAGTTGTCCG
TTGTTTTGGTTCACGAGAGACCCCTGCAGCAACTGTTGGAGCTTTCGTGT
GAAGCCTTTGTACTGGTCCTTTGTGGAGGCTTGAGCTGCCTTACCCGGTA
GAAGGGCAGCCGATGATCGCCTTGGCGACGCTGCCAGGGAAGCGATAGAA
GGCGAAAGTAATCAATAGAAGGCCGCAGAGGAACTTCTCTGTTCGATGGG
AAGGTCATTTGGGTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig798:116614..117079+

>mRNA_F-serratus_M_contig798.19276.1 ID=mRNA_F-serratus_M_contig798.19276.1|Name=mRNA_F-serratus_M_contig798.19276.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig798:116614..117079+ (Fucus serratus male)
ATGGACGCTGGTGAACTGCTTTCTGTGGTACCCTACGCATTGGTGCGGCG
CCCGGGGTTCTTTCCTGGATTTTTGGACGGTGAGTCGAATGCATGTTCTG
CTGCCAATCTGTTGTGGACAGGGACTGTAACCTTCTGTTGCATGGTTAAG
TTCCACCAGAATGGACCGAGCTGTTGGCACCTGAGTGGGGAGCAGAGAGC
TCGGCAAGATAAGGAGGGACTGGAGAATACAGTCTGTATGAAGTTGTCCG
TTGTTTTGGTTCACGAGAGACCCCTGCAGCAACTGTTGGAGCTTTCGTGT
GAAGCCTTTGTACTGGTCCTTTGTGGAGGCTTGAGCTGCCTTACCCGGTA
GATGGACGCTGGTGAACTGCTTTCTGTGGTACCCTACGCATTGGTGCGGC
GCCCGGGGTTCTTTCCTGGATTTTTGGACGGTGAGTCGAATGCATGTTCT
GCTGCCAATCTGTTGTGGACAGGGACTGTAACCTTCTGTTGCATGGTTAA
GTTCCACCAGAATGGACCGAGCTGTTGGCACCTGAGTGGGGAGCAGAGAG
CTCGGCAAGATAAGGAGGGACTGGAGAATACAGTCTGTATGAAGTTGTCC
GTTGTTTTGGTTCACGAGAGACCCCTGCAGCAACTGTTGGAGCTTTCGTG
TGAAGCCTTTGTACTGGTCCTTTGTGGAGGCTTGAGCTGCCTTACCCGGT
AG
back to top