mRNA_F-serratus_M_contig797.19272.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig797.19272.1
Unique NamemRNA_F-serratus_M_contig797.19272.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig797.19272.1 vs. uniprot
Match: D8LFS2_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.090e-32
Identity = 97/260 (37.31%), Postives = 142/260 (54.62%), Query Frame = 2 
Query:  761 ERSPSPLWMTV----------VREDETSESGGSISRRASCVPDVMLKVENWLKKNDPDYDHCQ----------------CLATTSSSVAGQKKTDSYSSKGRAFAPPHNSPGVEGGQRVKIAATDSTMSETELREVEEMTGRPEITRLGRSQQRSVDDLFLYQRNAEANRRRKQGEAQATEDRMRTGRPETCTRSKLLVEQMRRRKCDDTHVPTSERLYNGAHEQRQRREDRRAFLDTAVRLRASPKLTAKSRVFSPDRG 1462
            E +P P W  +          V E  TS+   S S+    VP  + + E WL  N+P+ +  +                 L T  +S      T    +  +   P H  P     +    AA      E   +E EEMTGRPEITR GR++QRSVDDL L+QRNAEA+RRR+  E +  E+++ TGRPETC RS +LV++MRR   +D H+PTS+RL++ A EQR+RR+ ++A ++TA+R RA+P ++ +S+    +RG
Sbjct:  212 ESTPLPKWSGLKKPTRQRAKHVEEPPTSKPAPS-SQGNHLVPSSLQQAEQWLATNEPESELGRPYRRRGPDQTPPKPDFSLGTRETSGRFATPTHVEDASQKEGVPMHEPPAATTARLRGQAAAVREAMELRRKEAEEMTGRPEITRRGRNKQRSVDDLLLFQRNAEASRRRRHDERETHENKLVTGRPETCRRSAVLVKRMRRGGGNDAHLPTSQRLHSDAGEQRRRRDTQQARVETAIRRRANPNISTRSKSLPRERG 470
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BLAST of mRNA_F-serratus_M_contig797.19272.1 vs. uniprot
Match: A0A6H5KNZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ7_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.410e-32
Identity = 87/216 (40.28%), Postives = 129/216 (59.72%), Query Frame = 2 
Query:  863 MLKVENWLKKNDPDYDHCQ----------------CLATTSSSVAGQKKTDSYSSKGRAFAPPHNSPGVEGGQRVKIAATDSTMSETELREVEEMTGRPEITRLGRSQQRSVDDLFLYQRNAEANRRRKQGEAQATEDRMRTGRPETCTRSKLLVEQMRRRKCDDTHVPTSERLYNGAHEQRQRREDRRAFLDTAVRLRASPKLTAKSRVFSPDRG 1462
            + + E+WL  N+PD +  +                 L T  +S      T    +  +   P H  P     +    AA      E+  +E EEMTGRPEITR GR++QRSVDDLFL+QRNAEA+RRR+  E +  E+++ TGRPETC RS +LV++MRR   +D H+PTS+RL++ A EQR+RR+ ++A ++TA+R RA+P ++ +S+    +RG
Sbjct:  267 LQQAEHWLATNEPDSELGRPYQRRGPDQTPPKPDFWLGTRETSGRFATSTHVVDASQKEEVPLHEPPAATTARLRGQAAAVREAMESRRKEAEEMTGRPEITRRGRNKQRSVDDLFLFQRNAEASRRRRHDERETHENKLVTGRPETCRRSAVLVKRMRRGGGNDAHLPTSQRLHSDAGEQRRRRDTQQARVETAIRRRANPNISTRSKSLPRERG 482
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig797.19272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFS2_ECTSI2.090e-3237.31WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KNZ7_9PHAE4.410e-3240.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig797contigF-serratus_M_contig797:364058..365740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1462
Cds size1140
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig797.19272.1prot_F-serratus_M_contig797.19272.1Fucus serratus malepolypeptideF-serratus_M_contig797 364058..365418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932367.8701363-CDS-F-serratus_M_contig797:364057..3642701622932367.8701363-CDS-F-serratus_M_contig797:364057..364270Fucus serratus maleCDSF-serratus_M_contig797 364058..364270 -
1690964274.2838914-CDS-F-serratus_M_contig797:364057..3642701690964274.2838914-CDS-F-serratus_M_contig797:364057..364270Fucus serratus maleCDSF-serratus_M_contig797 364058..364270 -
1622932367.892373-CDS-F-serratus_M_contig797:364491..3654181622932367.892373-CDS-F-serratus_M_contig797:364491..365418Fucus serratus maleCDSF-serratus_M_contig797 364492..365418 -
1690964274.297363-CDS-F-serratus_M_contig797:364491..3654181690964274.297363-CDS-F-serratus_M_contig797:364491..365418Fucus serratus maleCDSF-serratus_M_contig797 364492..365418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932367.916583-UTR-F-serratus_M_contig797:365418..3657401622932367.916583-UTR-F-serratus_M_contig797:365418..365740Fucus serratus maleUTRF-serratus_M_contig797 365419..365740 -
1690964274.3144467-UTR-F-serratus_M_contig797:365418..3657401690964274.3144467-UTR-F-serratus_M_contig797:365418..365740Fucus serratus maleUTRF-serratus_M_contig797 365419..365740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig797.19272.1

>prot_F-serratus_M_contig797.19272.1 ID=prot_F-serratus_M_contig797.19272.1|Name=mRNA_F-serratus_M_contig797.19272.1|organism=Fucus serratus male|type=polypeptide|length=380bp
MPVAFDPPTCRDGDDSAFDSTLDDLGGAVTDISKSDCGTNCNAGPPYVRD
QWQTTQDQQERAVFLSRTTSKPPSRSSDLKESATQTLERPCPSKESKEST
YLTVSGISGSGVSNDVTNAYEDARWSYSKKRPGYPAKESLQEKQVVERSP
SPLWMTVVREDETSESGGSISRRASCVPDVMLKVENWLKKNDPDYDHCQC
LATTSSSVAGQKKTDSYSSKGRAFAPPHNSPGVEGGQRVKIAATDSTMSE
TELREVEEMTGRPEITRLGRSQQRSVDDLFLYQRNAEANRRRKQGEAQAT
EDRMRTGRPETCTRSKLLVEQMRRRKCDDTHVPTSERLYNGAHEQRQRRE
DRRAFLDTAVRLRASPKLTAKSRVFSPDRG
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mRNA from alignment at F-serratus_M_contig797:364058..365740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig797.19272.1 ID=mRNA_F-serratus_M_contig797.19272.1|Name=mRNA_F-serratus_M_contig797.19272.1|organism=Fucus serratus male|type=mRNA|length=1683bp|location=Sequence derived from alignment at F-serratus_M_contig797:364058..365740- (Fucus serratus male)
AGCCGCTAACTATCGACTTTGGCCTTGTCGAGGACACTTTTAATAGCTTC
TGGCTTCATCGCGAGTGGTTTCATGCAACCGGCGAAAAGGGGGCATAGTC
GACGGAACATGGCGGATACTTTAGGCCAGGCACGAGCGCCACCTCCTCTC
CCCCCCTACCCCCCCCCTCCTCCTCCTCCTCCTCCCCTTCCTCATATTCC
TCCACAGCCACAATCGTCGATCGGCACACGGTACGCTGTCCACTCCGACA
CCCAGGGGGAAAAACTGTTTCTGCGATGATAACGCTGACGAGGTCCGCCG
AGAGGTACTCGGCTCTCGAGCTATGCCTGTGGCCTTCGATCCACCCACGT
GTCGCGACGGCGATGACTCAGCTTTCGACAGTACTCTAGACGATCTTGGT
GGGGCAGTTACAGACATTTCAAAATCAGATTGTGGGACGAACTGTAACGC
AGGCCCACCTTACGTGAGGGACCAGTGGCAGACGACCCAAGATCAGCAGG
AGAGAGCAGTTTTCCTGAGTCGAACCACTTCGAAACCACCTTCGCGCTCA
TCGGATTTGAAGGAAAGTGCAACTCAAACACTCGAACGCCCTTGCCCGTC
GAAAGAGTCGAAGGAGTCGACCTACCTTACTGTTAGTGGTATTAGTGGCA
GCGGCGTCTCCAACGATGTAACCAATGCTTACGAGGATGCCAGGTGGAGC
TATTCAAAGAAAAGGCCGGGATACCCAGCGAAAGAGAGCCTCCAAGAGAA
ACAGGTGGTCGAAAGAAGCCCGTCACCTCTCTGGATGACCGTGGTTCGAG
AGGACGAGACTTCCGAGTCGGGGGGCTCGATCTCTCGCCGCGCATCCTGT
GTTCCGGACGTCATGCTGAAGGTGGAAAACTGGCTCAAGAAGAATGATCC
CGACTACGACCACTGTCAATGTTTAGCAACTACCAGTAGTAGCGTGGCTG
GTCAAAAGAAGACAGATTCGTACTCCTCCAAAGGTCGTGCGTTCGCGCCG
CCACACAACTCGCCAGGCGTTGAAGGCGGGCAGCGCGTTAAGATCGCCGC
TACAGATTCAACAATGAGTGAAACCGAGCTACGGGAGGTAGAGGAAATGA
CGGGTAGACCGGAGATCACGCGTCTCGGACGAAGCCAGCAGCGAAGCGTC
GACGACTTGTTCTTGTACCAGCGCAATGCCGAAGCTAATCGACGCCGAAA
GCAGGGCGAGGCACAGGCTACCGAGGACAGGATGCGGACCGGTCGACCGG
TGAGACGCGCTTGTTTTACCTCAAAGACAGGAGGAACCTCGGGGTGCGTG
GTGAGCAAACAGAAAAACGTTACGAAAAAGAGAGTAGAAACGAAAACGTC
TATCTTGACTTGCCGATGTCATATACCCGGCCACCTCACCCCTCTGGCCC
CCCAAGATAGCGAAACGATTGTTGACCCCATTTAGATGTATCCCTCACAA
ATATGACTTGTGGTTCCCAGGAGACGTGCACCAGGTCAAAGCTCCTTGTC
GAACAAATGCGAAGGAGGAAATGCGATGATACCCACGTCCCAACGTCAGA
ACGACTCTACAACGGGGCCCACGAGCAGCGACAACGAAGAGAAGATCGTC
GGGCGTTCCTCGACACCGCCGTCCGCCTCCGTGCAAGCCCCAAGTTGACA
GCAAAATCGAGAGTTTTTTCGCCTGACCGCGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig797:364058..365740-

>mRNA_F-serratus_M_contig797.19272.1 ID=mRNA_F-serratus_M_contig797.19272.1|Name=mRNA_F-serratus_M_contig797.19272.1|organism=Fucus serratus male|type=CDS|length=2280bp|location=Sequence derived from alignment at F-serratus_M_contig797:364058..365740- (Fucus serratus male)
ATGCCTGTGGCCTTCGATCCACCCACGTGTCGCGACGGCGATGACTCAGC
TTTCGACAGTACTCTAGACGATCTTGGTGGGGCAGTTACAGACATTTCAA
AATCAGATTGTGGGACGAACTGTAACGCAGGCCCACCTTACGTGAGGGAC
CAGTGGCAGACGACCCAAGATCAGCAGGAGAGAGCAGTTTTCCTGAGTCG
AACCACTTCGAAACCACCTTCGCGCTCATCGGATTTGAAGGAAAGTGCAA
CTCAAACACTCGAACGCCCTTGCCCGTCGAAAGAGTCGAAGGAGTCGACC
TACCTTACTGTTAGTGGTATTAGTGGCAGCGGCGTCTCCAACGATGTAAC
CAATGCTTACGAGGATGCCAGGTGGAGCTATTCAAAGAAAAGGCCGGGAT
ACCCAGCGAAAGAGAGCCTCCAAGAGAAACAGGTGGTCGAAAGAAGCCCG
TCACCTCTCTGGATGACCGTGGTTCGAGAGGACGAGACTTCCGAGTCGGG
GGGCTCGATCTCTCGCCGCGCATCCTGTGTTCCGGACGTCATGCTGAAGG
TGGAAAACTGGCTCAAGAAGAATGATCCCGACTACGACCACTGTCAATGT
TTAGCAACTACCAGTAGTAGCGTGGCTGGTCAAAAGAAGACAGATTCGTA
CTCCTCCAAAGGTCGTGCGTTCGCGCCGCCACACAACTCGCCAGGCGTTG
AAGGCGGGCAGCGCGTTAAGATCGCCGCTACAGATTCAACAATGAGTGAA
ACCGAGCTACGGGAGGTAGAGGAAATGACGGGTAGACCGGAGATCACGCG
TCTCGGACGAAGCCAGCAGCGAAGCGTCGACGACTTGTTCTTGTACCAGC
GCAATGCCGAAGCTAATCGACGCCGAAAGCAGGGCGAGGCACAGGCTACC
GAGGACAGGATGCGGACCGGTCGACCGATGCCTGTGGCCTTCGATCCACC
CACGTGTCGCGACGGCGATGACTCAGCTTTCGACAGTACTCTAGACGATC
TTGGTGGGGCAGTTACAGACATTTCAAAATCAGATTGTGGGACGAACTGT
AACGCAGGCCCACCTTACGTGAGGGACCAGTGGCAGACGACCCAAGATCA
GCAGGAGAGAGCAGTTTTCCTGAGTCGAACCACTTCGAAACCACCTTCGC
GCTCATCGGATTTGAAGGAAAGTGCAACTCAAACACTCGAACGCCCTTGC
CCGTCGAAAGAGTCGAAGGAGTCGACCTACCTTACTGTTAGTGGTATTAG
TGGCAGCGGCGTCTCCAACGATGTAACCAATGCTTACGAGGATGCCAGGT
GGAGCTATTCAAAGAAAAGGCCGGGATACCCAGCGAAAGAGAGCCTCCAA
GAGAAACAGGTGGTCGAAAGAAGCCCGTCACCTCTCTGGATGACCGTGGT
TCGAGAGGACGAGACTTCCGAGTCGGGGGGCTCGATCTCTCGCCGCGCAT
CCTGTGTTCCGGACGTCATGCTGAAGGTGGAAAACTGGCTCAAGAAGAAT
GATCCCGACTACGACCACTGTCAATGTTTAGCAACTACCAGTAGTAGCGT
GGCTGGTCAAAAGAAGACAGATTCGTACTCCTCCAAAGGTCGTGCGTTCG
CGCCGCCACACAACTCGCCAGGCGTTGAAGGCGGGCAGCGCGTTAAGATC
GCCGCTACAGATTCAACAATGAGTGAAACCGAGCTACGGGAGGTAGAGGA
AATGACGGGTAGACCGGAGATCACGCGTCTCGGACGAAGCCAGCAGCGAA
GCGTCGACGACTTGTTCTTGTACCAGCGCAATGCCGAAGCTAATCGACGC
CGAAAGCAGGGCGAGGCACAGGCTACCGAGGACAGGATGCGGACCGGTCG
ACCGGAGACGTGCACCAGGTCAAAGCTCCTTGTCGAACAAATGCGAAGGA
GGAAATGCGATGATACCCACGTCCCAACGTCAGAACGACTCTACAACGGG
GCCCACGAGCAGCGACAACGAAGAGAAGATCGTCGGGCGTTCCTCGACAC
CGCCGTCCGCCTCCGTGCAAGCCCCAAGTTGACAGCAAAATCGAGAGTTT
TTTCGCCTGACCGCGGTGAGACGTGCACCAGGTCAAAGCTCCTTGTCGAA
CAAATGCGAAGGAGGAAATGCGATGATACCCACGTCCCAACGTCAGAACG
ACTCTACAACGGGGCCCACGAGCAGCGACAACGAAGAGAAGATCGTCGGG
CGTTCCTCGACACCGCCGTCCGCCTCCGTGCAAGCCCCAAGTTGACAGCA
AAATCGAGAGTTTTTTCGCCTGACCGCGGT
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