mRNA_F-serratus_M_contig1259.1934.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1259.1934.1
Unique NamemRNA_F-serratus_M_contig1259.1934.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1259.1934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1259contigF-serratus_M_contig1259:180958..181320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.2809224-UTR-F-serratus_M_contig1259:180957..1809721622929183.2809224-UTR-F-serratus_M_contig1259:180957..180972Fucus serratus maleUTRF-serratus_M_contig1259 180958..180972 +
1690962741.217769-UTR-F-serratus_M_contig1259:180957..1809721690962741.217769-UTR-F-serratus_M_contig1259:180957..180972Fucus serratus maleUTRF-serratus_M_contig1259 180958..180972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929183.2948184-CDS-F-serratus_M_contig1259:180972..1813201622929183.2948184-CDS-F-serratus_M_contig1259:180972..181320Fucus serratus maleCDSF-serratus_M_contig1259 180973..181320 +
1690962741.228172-CDS-F-serratus_M_contig1259:180972..1813201690962741.228172-CDS-F-serratus_M_contig1259:180972..181320Fucus serratus maleCDSF-serratus_M_contig1259 180973..181320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1259.1934.1prot_F-serratus_M_contig1259.1934.1Fucus serratus malepolypeptideF-serratus_M_contig1259 180973..181320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1259.1934.1

>prot_F-serratus_M_contig1259.1934.1 ID=prot_F-serratus_M_contig1259.1934.1|Name=mRNA_F-serratus_M_contig1259.1934.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MNAVLRSLCTCHSERRPLPAAFDSALFDPEVGNLALCVLCTVLRHSCAGN
FKTLPLAAALGCRLSALDVDHVTRGLLCAAVLGFLALNSYFTLLPKPVAL
RLCYGEVDRPVLDVLP
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mRNA from alignment at F-serratus_M_contig1259:180958..181320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1259.1934.1 ID=mRNA_F-serratus_M_contig1259.1934.1|Name=mRNA_F-serratus_M_contig1259.1934.1|organism=Fucus serratus male|type=mRNA|length=363bp|location=Sequence derived from alignment at F-serratus_M_contig1259:180958..181320+ (Fucus serratus male)
CTCGCCCCGTGCGTGATGAACGCAGTACTCCGCAGTCTTTGTACCTGCCA
CTCCGAACGACGCCCACTTCCCGCAGCCTTCGATTCTGCACTTTTTGATC
CTGAAGTCGGCAATCTCGCCCTGTGCGTGCTGTGCACAGTACTCCGTCAT
TCCTGTGCCGGCAACTTCAAAACTCTGCCACTTGCAGCAGCCCTGGGTTG
TAGACTCTCTGCTCTAGACGTCGACCATGTCACCCGGGGCTTGCTGTGCG
CAGCAGTCCTTGGTTTTCTTGCTCTCAACTCCTATTTCACACTTTTGCCA
AAGCCGGTAGCTCTTCGCTTGTGCTATGGAGAAGTTGACCGTCCTGTCCT
TGACGTGTTGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1259:180958..181320+

>mRNA_F-serratus_M_contig1259.1934.1 ID=mRNA_F-serratus_M_contig1259.1934.1|Name=mRNA_F-serratus_M_contig1259.1934.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1259:180958..181320+ (Fucus serratus male)
ATGAACGCAGTACTCCGCAGTCTTTGTACCTGCCACTCCGAACGACGCCC
ACTTCCCGCAGCCTTCGATTCTGCACTTTTTGATCCTGAAGTCGGCAATC
TCGCCCTGTGCGTGCTGTGCACAGTACTCCGTCATTCCTGTGCCGGCAAC
TTCAAAACTCTGCCACTTGCAGCAGCCCTGGGTTGTAGACTCTCTGCTCT
AGACGTCGACCATGTCACCCGGGGCTTGCTGTGCGCAGCAGTCCTTGGTT
TTCTTGCTCTCAACTCCTATTTCACACTTTTGCCAAAGCCGGTAGCTCTT
CGCTTGTGCTATGGAGAAGTTGACCGTCCTGTCCTTGACGTGTTGCCCAT
GAACGCAGTACTCCGCAGTCTTTGTACCTGCCACTCCGAACGACGCCCAC
TTCCCGCAGCCTTCGATTCTGCACTTTTTGATCCTGAAGTCGGCAATCTC
GCCCTGTGCGTGCTGTGCACAGTACTCCGTCATTCCTGTGCCGGCAACTT
CAAAACTCTGCCACTTGCAGCAGCCCTGGGTTGTAGACTCTCTGCTCTAG
ACGTCGACCATGTCACCCGGGGCTTGCTGTGCGCAGCAGTCCTTGGTTTT
CTTGCTCTCAACTCCTATTTCACACTTTTGCCAAAGCCGGTAGCTCTTCG
CTTGTGCTATGGAGAAGTTGACCGTCCTGTCCTTGACGTGTTGCCC
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