mRNA_F-serratus_M_contig797.19266.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig797.19266.1
Unique NamemRNA_F-serratus_M_contig797.19266.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig797.19266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig797contigF-serratus_M_contig797:117869..118261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig797.19266.1prot_F-serratus_M_contig797.19266.1Fucus serratus malepolypeptideF-serratus_M_contig797 117902..118210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932366.6487925-UTR-F-serratus_M_contig797:117868..1179011622932366.6487925-UTR-F-serratus_M_contig797:117868..117901Fucus serratus maleUTRF-serratus_M_contig797 117869..117901 +
1690964273.7986934-UTR-F-serratus_M_contig797:117868..1179011690964273.7986934-UTR-F-serratus_M_contig797:117868..117901Fucus serratus maleUTRF-serratus_M_contig797 117869..117901 +
1622932366.684028-UTR-F-serratus_M_contig797:118210..1182611622932366.684028-UTR-F-serratus_M_contig797:118210..118261Fucus serratus maleUTRF-serratus_M_contig797 118211..118261 +
1690964273.8284478-UTR-F-serratus_M_contig797:118210..1182611690964273.8284478-UTR-F-serratus_M_contig797:118210..118261Fucus serratus maleUTRF-serratus_M_contig797 118211..118261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932366.6697314-CDS-F-serratus_M_contig797:117901..1182101622932366.6697314-CDS-F-serratus_M_contig797:117901..118210Fucus serratus maleCDSF-serratus_M_contig797 117902..118210 +
1690964273.8103795-CDS-F-serratus_M_contig797:117901..1182101690964273.8103795-CDS-F-serratus_M_contig797:117901..118210Fucus serratus maleCDSF-serratus_M_contig797 117902..118210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig797.19266.1

>prot_F-serratus_M_contig797.19266.1 ID=prot_F-serratus_M_contig797.19266.1|Name=mRNA_F-serratus_M_contig797.19266.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MRTDSEAPPVDIETPHDRIESVFIGGIRRRWGDQGSKTHLRAVTGLSISF
GRLPGAGVFISLSYKAKLFPPRVAVTTEDDKIVSARVRAAQPLPTNGFTH
NL*
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mRNA from alignment at F-serratus_M_contig797:117869..118261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig797.19266.1 ID=mRNA_F-serratus_M_contig797.19266.1|Name=mRNA_F-serratus_M_contig797.19266.1|organism=Fucus serratus male|type=mRNA|length=393bp|location=Sequence derived from alignment at F-serratus_M_contig797:117869..118261+ (Fucus serratus male)
GAGGCATGAGGCGCAGGGGGGCCTCGAGGAAGTATGCGTACAGACAGCGA
AGCACCGCCTGTTGACATAGAAACCCCGCATGACCGTATAGAGAGTGTTT
TTATAGGAGGAATAAGGCGAAGGTGGGGCGATCAGGGTTCAAAAACGCAT
TTGCGCGCCGTAACAGGCCTTTCTATTTCATTCGGAAGGCTGCCCGGCGC
CGGCGTCTTTATTTCCCTCTCTTACAAAGCCAAACTGTTTCCCCCTCGCG
TCGCCGTCACCACAGAGGACGATAAAATCGTATCTGCGCGCGTACGTGCA
GCCCAGCCCCTGCCAACCAATGGGTTTACACACAACCTGTAGGGCGTTTC
TGAACAAACCCCTCTAGATAAAACATCAGTATTTCGATTCAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig797:117869..118261+

>mRNA_F-serratus_M_contig797.19266.1 ID=mRNA_F-serratus_M_contig797.19266.1|Name=mRNA_F-serratus_M_contig797.19266.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig797:117869..118261+ (Fucus serratus male)
ATGCGTACAGACAGCGAAGCACCGCCTGTTGACATAGAAACCCCGCATGA
CCGTATAGAGAGTGTTTTTATAGGAGGAATAAGGCGAAGGTGGGGCGATC
AGGGTTCAAAAACGCATTTGCGCGCCGTAACAGGCCTTTCTATTTCATTC
GGAAGGCTGCCCGGCGCCGGCGTCTTTATTTCCCTCTCTTACAAAGCCAA
ACTGTTTCCCCCTCGCGTCGCCGTCACCACAGAGGACGATAAAATCGTAT
CTGCGCGCGTACGTGCAGCCCAGCCCCTGCCAACCAATGGGTTTACACAC
AACCTGTAGATGCGTACAGACAGCGAAGCACCGCCTGTTGACATAGAAAC
CCCGCATGACCGTATAGAGAGTGTTTTTATAGGAGGAATAAGGCGAAGGT
GGGGCGATCAGGGTTCAAAAACGCATTTGCGCGCCGTAACAGGCCTTTCT
ATTTCATTCGGAAGGCTGCCCGGCGCCGGCGTCTTTATTTCCCTCTCTTA
CAAAGCCAAACTGTTTCCCCCTCGCGTCGCCGTCACCACAGAGGACGATA
AAATCGTATCTGCGCGCGTACGTGCAGCCCAGCCCCTGCCAACCAATGGG
TTTACACACAACCTGTAG
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