mRNA_F-serratus_M_contig796.19250.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig796.19250.1
Unique NamemRNA_F-serratus_M_contig796.19250.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig796.19250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig796contigF-serratus_M_contig796:130783..135295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005680.1
Exons5
Model size1567
Cds size264
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932363.8040712-UTR-F-serratus_M_contig796:130782..1313171622932363.8040712-UTR-F-serratus_M_contig796:130782..131317Fucus serratus maleUTRF-serratus_M_contig796 130783..131317 -
1690964272.475812-UTR-F-serratus_M_contig796:130782..1313171690964272.475812-UTR-F-serratus_M_contig796:130782..131317Fucus serratus maleUTRF-serratus_M_contig796 130783..131317 -
1622932363.8256369-UTR-F-serratus_M_contig796:132616..1332731622932363.8256369-UTR-F-serratus_M_contig796:132616..133273Fucus serratus maleUTRF-serratus_M_contig796 132617..133273 -
1690964272.4885795-UTR-F-serratus_M_contig796:132616..1332731690964272.4885795-UTR-F-serratus_M_contig796:132616..133273Fucus serratus maleUTRF-serratus_M_contig796 132617..133273 -
1622932363.8609128-UTR-F-serratus_M_contig796:133599..1336091622932363.8609128-UTR-F-serratus_M_contig796:133599..133609Fucus serratus maleUTRF-serratus_M_contig796 133600..133609 -
1690964272.5007071-UTR-F-serratus_M_contig796:133599..1336091690964272.5007071-UTR-F-serratus_M_contig796:133599..133609Fucus serratus maleUTRF-serratus_M_contig796 133600..133609 -
1622932363.942882-UTR-F-serratus_M_contig796:135194..1352951622932363.942882-UTR-F-serratus_M_contig796:135194..135295Fucus serratus maleUTRF-serratus_M_contig796 135195..135295 -
1690964272.546617-UTR-F-serratus_M_contig796:135194..1352951690964272.546617-UTR-F-serratus_M_contig796:135194..135295Fucus serratus maleUTRF-serratus_M_contig796 135195..135295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932363.8778064-CDS-F-serratus_M_contig796:133609..1337021622932363.8778064-CDS-F-serratus_M_contig796:133609..133702Fucus serratus maleCDSF-serratus_M_contig796 133610..133702 -
1690964272.5088074-CDS-F-serratus_M_contig796:133609..1337021690964272.5088074-CDS-F-serratus_M_contig796:133609..133702Fucus serratus maleCDSF-serratus_M_contig796 133610..133702 -
1622932363.8997335-CDS-F-serratus_M_contig796:134069..1342171622932363.8997335-CDS-F-serratus_M_contig796:134069..134217Fucus serratus maleCDSF-serratus_M_contig796 134070..134217 -
1690964272.5214646-CDS-F-serratus_M_contig796:134069..1342171690964272.5214646-CDS-F-serratus_M_contig796:134069..134217Fucus serratus maleCDSF-serratus_M_contig796 134070..134217 -
1622932363.9173794-CDS-F-serratus_M_contig796:135171..1351941622932363.9173794-CDS-F-serratus_M_contig796:135171..135194Fucus serratus maleCDSF-serratus_M_contig796 135172..135194 -
1690964272.5349414-CDS-F-serratus_M_contig796:135171..1351941690964272.5349414-CDS-F-serratus_M_contig796:135171..135194Fucus serratus maleCDSF-serratus_M_contig796 135172..135194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig796.19250.1prot_F-serratus_M_contig796.19250.1Fucus serratus malepolypeptideF-serratus_M_contig796 133610..135194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig796.19250.1

>prot_F-serratus_M_contig796.19250.1 ID=prot_F-serratus_M_contig796.19250.1|Name=mRNA_F-serratus_M_contig796.19250.1|organism=Fucus serratus male|type=polypeptide|length=88bp
MARPAGEGGSGKGKKKASAAKPRSPATGKVKNKGPARKKRASGDQIKDQL
DIIGAIKDRLKEVNMDFEEAYPNGVNFTPNAKDLDFI*
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mRNA from alignment at F-serratus_M_contig796:130783..135295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig796.19250.1 ID=mRNA_F-serratus_M_contig796.19250.1|Name=mRNA_F-serratus_M_contig796.19250.1|organism=Fucus serratus male|type=mRNA|length=4513bp|location=Sequence derived from alignment at F-serratus_M_contig796:130783..135295- (Fucus serratus male)
CGATTTGGAACCTATCTGGGATACATGTGCTGTGTCCTCGCGAGAACTGT
AAGCTTATAGGCGACGACTCTCCCGGAGCAGTTAGCTGTCCGGCGAAAAA
AATGGCGCGGCCTGCAGGAGAAGGGTGAGTTCAAGACACATATTTCTAAT
AAGTGTTCATTATCCCTCATTTTAAAATTTTAAAAATGAAGCAACAGTAG
TTCTCGTACTTGAGACCAGGTGCAAACTGTACCGTACACTTGTTACGATG
CTGTGCTCGGGCATTAGATCATGTACGCAGCTTCACTTACAATCTTACAT
GTCATTATGCGCAACAGCAGCCAACGAGCGTAATTGTCATGAAAGACGGC
GTTCAGTAGCAGTGGCTGTGCGCTGGCGTTTGTTCTTACTCACAAGTACA
TTCAACGAATTGGCTACAAACCCGATCAACTTCGTCGTACAGTACAGAGT
ACCAGGTACACGGATACACGGATAGTTCTTCCCTCCAAAAACTACCACCA
GGTACAGTACAGCCGTGCAGCAGGAGCACCGAGGGGGGGGCAGTAGCGGC
ACGGGGTGTAGTGGAGGGTGTCGCATACATGGCAGTGTATAACAGTCCCT
AAGTGTAAACACTATGGGCGATATGAGACGATATGAGAGTTGCGCCCGAA
GCTGTATCAAGGCGGGAAGTCGTTACAAGATCTCTTACGAGTAGGATCCA
GTATGCTTCCTTTGTATTTCAAGGCCGCATTACTTAGGGTTCTCTATCTT
TAATACTGCAGCACGAACTGATTCTATAAAGCGGAAATCTCAAGGCTGCA
AATTTGCTTGATTTTGCCGCCTCTTGTTCTAAATAGTTTTCCTTCTCGTA
CGTCATGTAGTATGTGTACTTTAGGTAATATATACCAGGTACCAGGGTTT
CATTGTATTTGGTCCAAATTAGTCTTGAATTGGCGCTCTCGTGTCACAGA
GCCTCCGAATTGTGTCCCTAACGACACTTTCGACCTTGCGGTTCTCGACC
GCGTGTAGTATTTAGAGATTTTAGTGCACTAACTTCGTACCGCGCTTGGA
TTATCCACTGATGTTGCTGTGCATTCAGCGGATCGGGCAAAGGCAAGAAA
AAGGCTTCTGCAGCGAAGCCCCGGTCACCGGCCACAGGCAAGGTCAAAAA
TAAGGGACCGGCGAGAAAGAAGAGGGCTTCCGGCGATCAGATCAAGGACC
AGCTCGACATCATTGGCGCAATCAAGGTACGACAGTGTTAGAGGTCAAAC
ATTTTGTTTGAATATTGAGGTTTTGTCTTTTCACCCTATGATCCTACCTA
CCAGGTAAATGTTTTGACATTTTTCTCACTGACTGGGGTACAGTATGCTC
AAAAGGTCTAGATGCATTCAAATTTTCCTTTAAACATTTGATGGGCTCAT
TTGCGACGATGTACATACAGCACTTCTGTGTGCCTTGTCCAGGACGTTGT
TAAACCCCACCACTCCCTTGGTTGGTTTCAGTCCTACCCAGGCGTCATCT
TTGTTCCACGCGTACGTATACTTGTTTCTGGGACTTGTCATGAAGTATTG
GAGTTTCAAGATAACAAGGGAAAAACTCTTTTCTAACCACCAGGACCGAC
TGAAAGAAGTGAACATGGACTTCGAAGAGGCTTATCCCAATGGAGTAAAC
TTCACACCTAACGCCAAGGACCTAGACTTCATCTGAATCCACGCGGGTGA
GCCCCCACGATGTTTTTTTTTTCAGGTCTTGGTGTGTGTGGGTCATTTGC
CAGCTCCAGTAAACCTTTAATATATTCATACAGTGCGCCTTACCTTCGGT
CCTATTAATAGGCTCTATAATACCCTTCATATATATGCTGTTGCAGCCGA
GAACATTCTTATGTTCACATGCTGTCCACGTAGGACACCGCCTGCCTGCC
TGTCTGTAAGGTTGCTCCCCTGGACATGACGCTATCGTGTGAAACCACAT
GAGAATAGTTTGATCTTGATAGCGTGTCATCCTAGCTCAACATTGGACGG
GTGATGATCGGTACACGCCCAGGCGAGACTGATCGGCAAGGCAGCGCCGC
CAAGGGAGACAACGAGGCTCTCGCTGGGGGCGAAGGAACCCATGATATCT
ACCTCATTAGTGACACGTTCTACCTTACTGAACGTGTCCCCCAGATTTCA
TTCGCGTGTTGCGCAACTGAGAGAAGGGTCCTACACGACGGCGGGAAGCT
CCGAGCCAGTGTATGGCCCTAGCTCATAAATTTTCCGTTTCTTGTGATGC
AGAGCTTGTGTCGTTTCGTGGTGTGCACGATTTGCTTTCGAATGCCTCTC
TGGGAAATGCAAAACTCCAAGTAGCAGTATTACGTTTTCCAGAGAAAAAA
TGTTTTGCGAAGGTATGAGTTTGATATATGTCAGCAAGTACTATTCTATT
ATTATTAATACAAATAGCAAAATAACCTGTACGAGTTGCTGTCGATTCTC
CTGCCCGGTTGGTCGTGACATCGATTTTTGTTGCTGTGGACGGTGTTGAT
TTATTTGTCAACCGAAATGGCAATATATCCCAAGGAATCGCTCCTTACGA
CGATTGCATCGATAAGTTGCCCTTTCGATCGATTTCAGCCATCGATGGCA
AATCCCGTGAAGCAGTGTTAGTTCTGTGCAACAAGCTCTACTGTTGTACT
ATTCGCATCACTCCACCGAATGGTTCAAAACGATATCTTCGCCCCAAGAG
CTTGAGTGTCTAGTGCCTCCTCCTGACCGGTTAGGGCGCAAGACGCCCTT
TTTTATTTTCATATAACTCCCTGTCCAGGTTTGTGATCAACACGTAATGA
TTCGCTTTTGAAGAATTATGACAGCCAAGGTTTAGGTTACGCACATGCCT
CCTCGAGACCCCTAGGCCCCTCTCCTCTATATTTTTCTATCGCTGATTTC
AGATTTAGTTTCGCCTAAACCTTGACTCGAATCTTCTCGGCAATGACCCC
CTCTTGCTGGAGACGCTCAAAACAACGCGTGGTCGCCTTAGCGACGTCTG
TCAGGTAGGACTCCCGCTTGCGCCAGTCGACTACGTAACCCACCGCCAGG
ACTACCCCGTACCCCAACACTTCATCCCCCTGCTGTTGCACGCCTCCGTT
CACGAAGGTTACGGCCAACTGCCCGGTGTGGGCCATGAGCCAGGCACCTA
ACGCCCTTGATGTTTTGTCGTACGCTTTTGTGCTGGACAAGGCGTATCCA
TCCTTCGACAGAGCAGTTTTGACGACCCCTCGCGGCTTACTCCGTCCAGC
ATACAGCGTCCGCTGGTCGACAAGAAGCCACAAGTGTTCATCAGTCCAAT
CTATGCCATCTCCAAATTCTCCGCTCAACAATGAGGCAGCACTTGCTGTC
TCTGCTTGCTCTGAGACCTGCAGGGAACGAACGGCGAGGATATAGGATCC
TGACCGCGTCTTCGCGATTACTCGCTCGCCGAGCTTTGCGTTGATCCGGC
GGCCGTCAGTATTTGTCCCACGATTGGTCGTGTAGCCCGACGCGATGTCC
CCGACTGAGGAAGGCGCGCTTGTGCAGGACAATAAGTCCACAACGCTTGG
TAAACCGAACACGAATTTGGTTTCGTTTATCAGGAATGTAAGATTTGTGC
CAAATTTCCGCGGCCCGGATCCACGGCAGGCCATGTCTAGTCGCGGCCAA
AACGGCGGAGTAGACCATCCGAGCCTCCTGCCGTATAGAGGAAATGCAAC
TTAACATGAAATAGTTTTTCGGAGGGCTGTATCAGGGTTTGCGGGCACGC
CGAACACAGTTGAAATTTATCTCATGCGAACAGAGGTCGAGGGAGTGATA
ACAGCTCATGAAGGATACCCATATTCTAGGGATATGGTTTTGGTCGAGGT
TTCAAACAAGTTTCACGTTTAGGCGATCCTCTCGATACAGTACCTGGATA
TAATGTTCTATAGAAAATGCAAATACCTCAAGAGGGGGTCACGAGAGCCT
TGGAGTCACAACCAACGACCCCTGTAAATCGCGTTTTTCCACGGAGGACG
ATAGAAGTTGTCTGGATTGCCCGCTGACGGAAGAAGCTGCCGTGTCGCTT
ATCGTTCTGCCGGTGTGCGTATGTAACGATATTGTGGCATTCACTAGATT
ATAAACGAAGAGAGTCGAGATTAAATCCCCGGAGTCCTCTGGCACTTCCG
AGCTACTCGTTGAGAATTCGACTGGTACGGCGGCCGGTCGATCACCTTTG
TCGTGAGGTATCCGATGCCTGTTGAGCCGGCTGCTGGTAGTTGGTACTAG
TATCCACGGCGTAGCCGCTGCTTCGGCCTCCCACCCTGAGCGGAGATATC
GGTGAACATCTACGTATACGATCAACCGCGATCCCTAAGGCCAGCCCTAC
TCTCCGAGAACATTCAACAACACCAGCTCCCACGACAAAATGCTTGGGTT
TGGACCTCTTTCTGCTCTGACCGCGCCCCTGTAGATTAGGGGCTATGGCG
TACGGCACGTTCGTGAAGGTAACGAGACCGACGCAGCCGAGATCAGGGAC
CCACAAAGGGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig796:130783..135295-

>mRNA_F-serratus_M_contig796.19250.1 ID=mRNA_F-serratus_M_contig796.19250.1|Name=mRNA_F-serratus_M_contig796.19250.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig796:130783..135295- (Fucus serratus male)
ATGGCGCGGCCTGCAGGAGAAGGATGGCGCGGCCTGCAGGAGAAGGCGGA
TCGGGCAAAGGCAAGAAAAAGGCTTCTGCAGCGAAGCCCCGGTCACCGGC
CACAGGCAAGGTCAAAAATAAGGGACCGGCGAGAAAGAAGAGGGCTTCCG
GCGATCAGATCAAGGACCAGCTCGACATCATTGGCGCAATCAAGCGGATC
GGGCAAAGGCAAGAAAAAGGCTTCTGCAGCGAAGCCCCGGTCACCGGCCA
CAGGCAAGGTCAAAAATAAGGGACCGGCGAGAAAGAAGAGGGCTTCCGGC
GATCAGATCAAGGACCAGCTCGACATCATTGGCGCAATCAAGGACCGACT
GAAAGAAGTGAACATGGACTTCGAAGAGGCTTATCCCAATGGAGTAAACT
TCACACCTAACGCCAAGGACCTAGACTTCATCTGAGACCGACTGAAAGAA
GTGAACATGGACTTCGAAGAGGCTTATCCCAATGGAGTAAACTTCACACC
TAACGCCAAGGACCTAGACTTCATCTGA
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