mRNA_F-serratus_M_contig796.19242.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig796.19242.1
Unique NamemRNA_F-serratus_M_contig796.19242.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: D8LEW0_ECTSI (20S proteasome subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW0_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 3.260e-121
Identity = 211/369 (57.18%), Postives = 248/369 (67.21%), Query Frame = 1
Query:   10 MHATIVSLVISVGLQSSVASVYDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGV---GGEHRW-RQRTRR---EASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDAC-PRVFRSEPSGAFAEWTASAVGKGSDKALSKLEAVPELGALDWRDLAIEAVRATLASGGRECDVIVLRR-------------------ETEATEGDGQMVVATDRRWRRRGNAWMRRFSGSMAADGGILLEGSG 1035
            M A I  L + +  +  +A+VYDRAITVFSPDGKL+QVSYAEEAV++G L VAA NGR+AIA+CLERP  D       +    ASE T        V ++A  + G   +G     G +H + R+R RR   E    +  VG GI+D ANNQDRKLCE+DEGVYLAFAGISADGRVLASKIRLECQSYR+ MG  P VG+IARYVGELQH+YTRTGGARP+GV+C+VAGFDED   P VFRSEPSGA+AEWTASAVGK SDKAL +LEAVP+LGALDWR  A  AVRA LA G + CDV+VLRR                   E+E T   G    +    W  RG AW +RF GS+  DG +LLE  G
Sbjct:    1 MRAPIAVLAVILAARPCMAAVYDRAITVFSPDGKLMQVSYAEEAVKQGSLGVAACNGRDAIAMCLERPAADGDITDPDATPSRASETT--------VATSAITDAGAGAAGDTARAGDDHVYSRRRNRRKHHEGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSYRYSMGAAPSVGYIARYVGELQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWTASAVGKASDKALGRLEAVPDLGALDWRGTAEAAVRAALAGGAKYCDVLVLRRVAGDDDVPAAAEAVATEPPESEFTAEGGGEARSARAGWSHRGGAWSKRFLGSIGGDGAVLLEEGG 361          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A6H5K8Y9_9PHAE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y9_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 1.680e-114
Identity = 207/367 (56.40%), Postives = 242/367 (65.94%), Query Frame = 1
Query:   10 MHATIVSLVISVGLQSSVASVYDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEH----RWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDAC-PRVFRSEPSGAFAEWTASAVGKGSDKALSKLEAVPELGALDWRDLAIEAVRATLASGGRECDVIVLRRETEATEGDGQMVVAT--------------DRRWR------RRGNAWMRRFSGSMAADGGILLEGSG 1035
            M A I  L + +  +  +A+VYDRAITVFSPDGKL+QVSYAEEAV+RG LAVAA NGR+AIA+CLERP  D       +     SE T    V+    + A    G+  + G G  H    R  +R RRE    +  VG GI+D ANNQDRKLCE+DEGVYLAFAGISADGRVLASKIRLECQS+R+ MG  P VG+IARYVG LQH+YTRTGGARP+GV+C+VAGFDED   P VFRSEPSGA+AEW ASAVGK SDKAL KLE+VP+LGALDWR  A  AVRA LA G +ECDV+VLRR  +                          + RW       R G AW +RF GS+  DG +LLE  G
Sbjct:  309 MRAPIAVLAVILAARPCIAAVYDRAITVFSPDGKLMQVSYAEEAVKRGSLAVAACNGRDAIAMCLERPEADGDVTDPDATPSRPSETTVATSVITDAGAGA---AGD--TAGAGDAHVYSRRRSRRKRREGGVRDPGVGVGIVDSANNQDRKLCEIDEGVYLAFAGISADGRVLASKIRLECQSFRYSMGAAPSVGYIARYVGGLQHRYTRTGGARPYGVACLVAGFDEDTLLPSVFRSEPSGAYAEWAASAVGKASDKALDKLESVPDLGALDWRGTAEAAVRAALAGGAKECDVLVLRRVADXXXXXXXXXXXXXXXXXXXXXXXXXGEVRWLKAGWSDRGGGAWSKRFFGSIGGDGAVLLEEGG 670          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A835YTL9_9STRA (Proteasome subunit-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.820e-44
Identity = 89/169 (52.66%), Postives = 115/169 (68.05%), Query Frame = 1
Query:  415 SGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDAC-PRVFRSEPSGAFAEWTASAVGKG---SDKALSKLEAVP-ELGALDWRDLAIEAVRATL-ASGGRECDVIVLRRET 903
            S + D  +N  RKL +VDE VY+ FAG++ADGRV+  KIR+ECQSYR   G  P + HIARY G+LQH+YT  GG RPFGV+ ++AGFD D    RVFR++PSGA  EW A AVG G   +D A+ +LEA   +LG ++   LA  A RA L A   REC+V++L+R T
Sbjct:    5 SSLADTRSNLRRKLVQVDEEVYVTFAGLAADGRVMLDKIRVECQSYRLTFGEAPSLAHIARYAGDLQHRYTLQGGGRPFGVALIIAGFDADTGGARVFRTDPSGAVTEWRAVAVGGGKGVNDAAMKQLEAEGGKLGEMEGESLAEAAARAALQADAARECEVLLLQRRT 173          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A2P2IA53_9CRUS (Proteasome subunit alpha type n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IA53_9CRUS)

HSP 1 Score: 156 bits (394), Expect = 1.070e-40
Identity = 99/276 (35.87%), Postives = 141/276 (51.09%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEAVPELGALDWRD--LAIEAVRATLASGGRECDVIVLR 894
            YDRA+TVFSPDG L QV YA EAV +G  AV    GR  + I +E+                              +STA ++                     +A TV                RK+CEVD+ + LAFAG++AD RVL +K RLECQSYR  +   P VG+IA+Y+  +Q KYT+ GG RPFG++ ++ GF++D  P ++++EPSGAF+EW ASA G+        LE   +  A D     LA+ A+   + SG +  ++ +L+
Sbjct:    4 YDRALTVFSPDGHLFQVEYATEAVNKGTTAVGV-RGRELLVIGVEK------------------------------KSTAKLQ---------------------DARTV----------------RKICEVDQHIVLAFAGLTADARVLVNKARLECQSYRLTVEDSPTVGYIAQYIARVQQKYTQRGGRRPFGIAGIIIGFNKDGSPALYQTEPSGAFSEWKASATGRNHKSVREFLEKHYDEEAKDDDQVKLAVRALMEVVESGAKNIEIAILK 211          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A5F5XRW3_FELCA (Proteasome subunit alpha type-7 n=2 Tax=Felis catus TaxID=9685 RepID=A0A5F5XRW3_FELCA)

HSP 1 Score: 157 bits (397), Expect = 7.240e-40
Identity = 101/284 (35.56%), Postives = 155/284 (54.58%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQD----RKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEAVPELGALDWRDLAIEAVRATLA----SGGRECDVIVLRRE 900
            YDRAITVFSPDG L QV YA+EAV++G  A  A  GR + +  +    + + AG   +  G A  GT  +    +  +TA + VG      V                   V+G      A  QD    RK+C +D+ V +AFAG++AD R++ ++ R+ECQS+R  +  P  V +I RY+  L+ +YT++ G RPFG+S ++ GFD D  PR+++++PSG +  W A+A+G+G+      LE      A++  DL I+ V   L     SGG+  ++ V+RR+
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAGCALFGRLSWSPGIVGVAEGSGAG---TRLGPADAGTAAQAGAGESGATALLPVGVRGKDIV-------------------VLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRD 264          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A5J4ZA11_PORPP (Proteasome subunit alpha type n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZA11_PORPP)

HSP 1 Score: 153 bits (387), Expect = 2.730e-39
Identity = 88/239 (36.82%), Postives = 126/239 (52.72%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLE 789
            YDRAITVFSPDG L QV YA EAV++G  AV    G++ + +CLE+                              +STA ++                     EA TV                RK+C +D+ + LAFAG++AD RVL +K R+ECQSYR  +   P V ++ RY+  +Q +YT++GG RPFG+S ++ GFD D  PR+F+++PSG ++EW A+A+G+ S      LE
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVRKGTTAVGV-RGKDVLVLCLEK------------------------------KSTAKLQ---------------------EARTV----------------RKICNLDQHIVLAFAGLTADARVLINKARVECQSYRLTVEDAPSVDYVTRYIAGVQQRYTQSGGVRPFGISSLIVGFDTDGSPRLFQTDPSGTYSEWKANAIGRNSKTVTEFLE 174          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: K3WH72_GLOUD (Proteasome subunit alpha type n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WH72_GLOUD)

HSP 1 Score: 151 bits (382), Expect = 6.370e-39
Identity = 93/276 (33.70%), Postives = 137/276 (49.64%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEA--VPELGALDWRDLAIEAVRATLASGGRECDVIVLR 894
            YDRAITVFSPDG L QV YA EAV++G + V    G+N++ + +ER                     K    LQ   +                                               RK+C+VD+ + +AFAG++AD RVL +K RLECQSYR  +   P V ++ARYV  +Q KYT+ GG RPFG+S ++AG D +  P++++++PSG F+ W A+A G+ S      LE     +L   D   LAI+A+   + SG +  ++ ++R
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKNSVILAVER---------------------KEIAKLQDPRTV----------------------------------------------RKICKVDDHISIAFAGLTADARVLINKARLECQSYRLTVEDAPSVEYVARYVARIQQKYTQRGGVRPFGISMLIAGCDNNGVPQLYQTDPSGTFSAWKANATGRNSTNIREFLEKNYAEDLSEEDATRLAIKALLEIVESGSKNIEIAIVR 211          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A7R8WDS4_9CRUS (Proteasome subunit alpha type n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WDS4_9CRUS)

HSP 1 Score: 150 bits (380), Expect = 1.300e-38
Identity = 95/280 (33.93%), Postives = 142/280 (50.71%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEA-VPELGALDWRD---LAIEAVRATLASGGRECDVIVLRRE 900
            YDRAITVFSPDG L QV YA+EAV++G  AV    G N + + +E+                              +S A ++                     E  T+                RK+C +DE V +AFAG++AD R+L ++ R+ECQSYR  +  P  + +I RY+  L+ KYT++ G RPFG+SC++AGFD+D  P ++++EPSG ++EW A+A G+ S      LE    E    D +    L I+A+   + SGG+  +V V+ R+
Sbjct:    6 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGV-RGLNTVVLGVEK------------------------------KSVAKLQ---------------------EERTI----------------RKICGLDEHVMMAFAGLTADARILVNRARVECQSYRLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIAGFDDDGTPHLYQTEPSGTYSEWKANATGRSSKTVREFLEKHYKEDDTSDTKKAVMLCIKALMEVVQSGGKNLEVAVMERK 217          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: A0A481T050_FOLCA (Proteasome subunit alpha type n=2 Tax=Isotomidae TaxID=36141 RepID=A0A481T050_FOLCA)

HSP 1 Score: 150 bits (379), Expect = 1.770e-38
Identity = 93/283 (32.86%), Postives = 142/283 (50.18%), Query Frame = 1
Query:   64 ASVYDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEAVPELGALDWRD----LAIEAVRATLASGGRECDVIVLRRE 900
            AS YDRAITVFSPDG L QV YA+EAV++G  AV    G N + + +E+                              +S A ++                     E  TV                RK+C +D  V +AFAG++AD R+L ++ R+ECQS+R  +  P  + +I R++ EL+ +YT++ G RPFG+SC++ GFDED  PR++++EPSG + EW A+A G+ +      LE           +    LAI A+   + SGG+  ++ V+R++
Sbjct:    2 ASKYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGV-RGSNCVVLGVEK------------------------------KSVAKLQ---------------------EERTV----------------RKICLLDNHVVMAFAGLTADARILINRARVECQSHRLTVEDPVSLEYITRHIAELKQRYTQSNGRRPFGISCLIGGFDEDGTPRLYQTEPSGTYHEWKANATGRNAKTVREFLEKYYNADEASSEEKTVKLAIRALLEVVQSGGKNLEIAVMRKD 216          
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Match: H3GBZ7_PHYRM (Proteasome subunit alpha type n=8 Tax=Peronosporaceae TaxID=4777 RepID=H3GBZ7_PHYRM)

HSP 1 Score: 150 bits (378), Expect = 2.460e-38
Identity = 93/276 (33.70%), Postives = 142/276 (51.45%), Query Frame = 1
Query:   73 YDRAITVFSPDGKLIQVSYAEEAVQRGGLAVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVESTADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLCEVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGELQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGKGSDKALSKLEA--VPELGALDWRDLAIEAVRATLASGGRECDVIVLR 894
            YDRAITVFSPDG L QV YA EAV++G + V    G+N++ + +ER                              + TA ++                     +  TV                RK+C+VD+ + +AFAG++AD RVL +K RLECQSYR  +   P V ++ARYV  +Q KYT+ GG RPFG+S ++AG ++   P++++++PSG F+ W A+A G+ S      LE   V +    +   LAI+A+   + SG +  +++V+R
Sbjct:    4 YDRAITVFSPDGHLFQVEYAMEAVKKGAVVVGV-RGKNSVVLAVER------------------------------KETAKLQ---------------------DPRTV----------------RKICKVDDHISIAFAGLTADARVLVNKARLECQSYRLTVEDAPSVEYVARYVARVQQKYTQRGGVRPFGISMLIAGCNDKGVPQLYQTDPSGTFSAWKANATGRNSTNIREFLEKNFVEDATEDEAVTLAIKALLEVVESGSKNIEIVVVR 211          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig796.19242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW0_ECTSI3.260e-12157.1820S proteasome subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5K8Y9_9PHAE1.680e-11456.40PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A835YTL9_9STRA2.820e-4452.66Proteasome subunit-domain-containing protein (Frag... [more]
A0A2P2IA53_9CRUS1.070e-4035.87Proteasome subunit alpha type n=1 Tax=Hirondellea ... [more]
A0A5F5XRW3_FELCA7.240e-4035.56Proteasome subunit alpha type-7 n=2 Tax=Felis catu... [more]
A0A5J4ZA11_PORPP2.730e-3936.82Proteasome subunit alpha type n=1 Tax=Porphyridium... [more]
K3WH72_GLOUD6.370e-3933.70Proteasome subunit alpha type n=2 Tax=Pythiaceae T... [more]
A0A7R8WDS4_9CRUS1.300e-3833.93Proteasome subunit alpha type n=1 Tax=Cyprideis to... [more]
A0A481T050_FOLCA1.770e-3832.86Proteasome subunit alpha type n=2 Tax=Isotomidae T... [more]
H3GBZ7_PHYRM2.460e-3833.70Proteasome subunit alpha type n=8 Tax=Peronosporac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig796contigF-serratus_M_contig796:4075..8172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.9
Seed ortholog evalue6.5e-100
Seed eggNOG ortholog2880.D8LEW0
KEGG koko:K02731
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0183@2759
Ec32 ortholog description20S proteasome subunit
Ec32 orthologEc-21_005760.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051,ko04131
Exons6
Model size1528
Cds size1071
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig796.19242.1prot_F-serratus_M_contig796.19242.1Fucus serratus malepolypeptideF-serratus_M_contig796 4084..7724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.939435-UTR-F-serratus_M_contig796:4074..40831622932361.939435-UTR-F-serratus_M_contig796:4074..4083Fucus serratus maleUTRF-serratus_M_contig796 4075..4083 +
1690964271.4596-UTR-F-serratus_M_contig796:4074..40831690964271.4596-UTR-F-serratus_M_contig796:4074..4083Fucus serratus maleUTRF-serratus_M_contig796 4075..4083 +
1622932362.0728328-UTR-F-serratus_M_contig796:7724..81721622932362.0728328-UTR-F-serratus_M_contig796:7724..8172Fucus serratus maleUTRF-serratus_M_contig796 7725..8172 +
1690964271.5430346-UTR-F-serratus_M_contig796:7724..81721690964271.5430346-UTR-F-serratus_M_contig796:7724..8172Fucus serratus maleUTRF-serratus_M_contig796 7725..8172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.9576283-CDS-F-serratus_M_contig796:4083..41941622932361.9576283-CDS-F-serratus_M_contig796:4083..4194Fucus serratus maleCDSF-serratus_M_contig796 4084..4194 +
1690964271.4754639-CDS-F-serratus_M_contig796:4083..41941690964271.4754639-CDS-F-serratus_M_contig796:4083..4194Fucus serratus maleCDSF-serratus_M_contig796 4084..4194 +
1622932361.9751253-CDS-F-serratus_M_contig796:4686..48331622932361.9751253-CDS-F-serratus_M_contig796:4686..4833Fucus serratus maleCDSF-serratus_M_contig796 4687..4833 +
1690964271.496914-CDS-F-serratus_M_contig796:4686..48331690964271.496914-CDS-F-serratus_M_contig796:4686..4833Fucus serratus maleCDSF-serratus_M_contig796 4687..4833 +
1622932362.0003786-CDS-F-serratus_M_contig796:5788..59831622932362.0003786-CDS-F-serratus_M_contig796:5788..5983Fucus serratus maleCDSF-serratus_M_contig796 5789..5983 +
1690964271.5078359-CDS-F-serratus_M_contig796:5788..59831690964271.5078359-CDS-F-serratus_M_contig796:5788..5983Fucus serratus maleCDSF-serratus_M_contig796 5789..5983 +
1622932362.0152404-CDS-F-serratus_M_contig796:6398..65401622932362.0152404-CDS-F-serratus_M_contig796:6398..6540Fucus serratus maleCDSF-serratus_M_contig796 6399..6540 +
1690964271.51816-CDS-F-serratus_M_contig796:6398..65401690964271.51816-CDS-F-serratus_M_contig796:6398..6540Fucus serratus maleCDSF-serratus_M_contig796 6399..6540 +
1622932362.0389981-CDS-F-serratus_M_contig796:6819..69861622932362.0389981-CDS-F-serratus_M_contig796:6819..6986Fucus serratus maleCDSF-serratus_M_contig796 6820..6986 +
1690964271.525951-CDS-F-serratus_M_contig796:6819..69861690964271.525951-CDS-F-serratus_M_contig796:6819..6986Fucus serratus maleCDSF-serratus_M_contig796 6820..6986 +
1622932362.0532281-CDS-F-serratus_M_contig796:7415..77241622932362.0532281-CDS-F-serratus_M_contig796:7415..7724Fucus serratus maleCDSF-serratus_M_contig796 7416..7724 +
1690964271.5338504-CDS-F-serratus_M_contig796:7415..77241690964271.5338504-CDS-F-serratus_M_contig796:7415..7724Fucus serratus maleCDSF-serratus_M_contig796 7416..7724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig796.19242.1

>prot_F-serratus_M_contig796.19242.1 ID=prot_F-serratus_M_contig796.19242.1|Name=mRNA_F-serratus_M_contig796.19242.1|organism=Fucus serratus male|type=polypeptide|length=357bp
MHATIVSLVISVGLQSSVASVYDRAITVFSPDGKLIQVSYAEEAVQRGGL
AVAASNGRNAIAICLERPPDDAQAGPDHSNNGAASEGTKHEDVLQQVEST
ADIEVGNEYSGGVGGEHRWRQRTRREASTVNEVVGSGILDDANNQDRKLC
EVDEGVYLAFAGISADGRVLASKIRLECQSYRFGMGTPPGVGHIARYVGE
LQHKYTRTGGARPFGVSCVVAGFDEDACPRVFRSEPSGAFAEWTASAVGK
GSDKALSKLEAVPELGALDWRDLAIEAVRATLASGGRECDVIVLRRETEA
TEGDGQMVVATDRRWRRRGNAWMRRFSGSMAADGGILLEGSGGQESKHEY
DDDEVL*
back to top

mRNA from alignment at F-serratus_M_contig796:4075..8172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig796.19242.1 ID=mRNA_F-serratus_M_contig796.19242.1|Name=mRNA_F-serratus_M_contig796.19242.1|organism=Fucus serratus male|type=mRNA|length=4098bp|location=Sequence derived from alignment at F-serratus_M_contig796:4075..8172+ (Fucus serratus male)
GTTGGCGAGATGCACGCAACGATAGTGTCTTTAGTGATATCTGTGGGTCT TCAATCATCTGTAGCTTCCGTTTATGACCGAGCTATAACGGTATTCTCTC CTGACGGCAAACTGATACAGGTAACTTATTATACAAATTGCATTTGACTG CACAGAGTTCAGTAGTTGTAGTTTGCACAGTAACACATTTACTCGAATTT TGAGTCGAAATCGATACCACCCAACATAAGTACCAACCGCTGAACTCACT CCTCAGCCACTGCAGGAAGCCGTTCAAAGGACATAGTGCGCTCACTTTTT TACTTCTTGGTGGTGGGCAGGGCACTAGACGATATTTTGCCTGTCGCGTG CAGTGTATGTGGCTTGAACAGACGACATACGCTCTTGTCCTTGTATTGCA GCTACGAAGTAACGAGCACAAGTACAGCAGCACAGATACAAGTAGTTAGT ATGAAAACGACAGTATTAAAAGTACAAGTACTAGGTATTATAGTTACTTC TATATAGCACACCATGTAAGCCCTCTTTACCAAGCGCAGAGTTATGAGAT TAGATCGCGACTACAGCCGCTCGCAGGAGATTATATTAGTGCTTGGTCGC TCGACGTTGCAGGTGTCATACGCTGAGGAAGCGGTGCAGCGAGGGGGACT GGCGGTAGCCGCTTCCAACGGGCGGAACGCAATTGCAATATGCCTTGAGC GGCCGCCCGACGACGCTCAAGCTGGGCCAGATCACAGCAACAATGGCGCC GCCTCGGAGGTGAGCCAACATGTACCATAGAATTCGTAAATGATTTGATC AATCTTGGGTTATGACAGCATTATTTATGCGTTTCCGTGGCGGAAAGGTT TCGAGCGTGAGTTACAAATGTTCAGCCTCGAGGTGGGAAGAATGCTGGAC TTGAATCGCGAAGAAAAATGAAATAATGTGAAACCGGGAGAGATGGGTTG GTCCTATATTGACTTCAGACGGGAACGTTCAACGTCCTAGTATGCATGGT TACACATATAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGA ACGTGGTCAGCTGAACAGGGAAAATGAACATTTCTCTATCCGCGTTCGCG CCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCC GCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGGTT CCTCCCGTGTTCCGCGGCGGCGTCCATTTATTTAGTTTTAAACCGCCATA CGCCATCGGGTCAGTCCTGAGTTTATCGGGTCACGCAATTGCATACTGAT GACGTGCACTGCCGAGAGTTCGCCGGCACACGGCCAGTAAACCTCAAGGT AGTTCCAAGCGAGTGCTGCTTTGGCAAGTCACCATGAACCAATTAATATG CGCCTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAG CACCGGTGATAGGTGAGATTGGTAAGCTGGAACATTGATGGTCTCCATCG TGAGAAAGTCAAGAACAAACAAAACTTATGCCAGGTACCTTTTCCTCAAA ACCCCATACTATATTTCTGTAATCTAAACCCTTGTTAATAACTGGATCTC GTTTGGGTTGGACCGTACAGTACAGTAGCAGGCCCATGATTAATGCGCAG CGTATGTCGGTACGTTGATCGCATGCTGTTCTCGTTCCAAATGAAACGAA ATGAAACGATGCAGGGGACAAAACACGAAGATGTCCTACAGCAGGTGGAA TCGACCGCTGATATCGAGGTGGGGAATGAGTATTCAGGCGGTGTTGGAGG CGAGCACAGGTGGAGGCAGCGGACGCGCCGCGAAGCCTCAACGGTCAACG AAGTCGTGGGGTCGGGGATCTTAGACGACGCTAACAATCAAGATCGCAAG CTCTGCGAGGTGCTGCATATCAGTTTTGTTATTGCCTGAGACGGTACCTG CTGAAAAGCACTCTTGTTTTGGTTTCCGTGCGTTTTTATGATCAAACCTT GAAACTAAAATATTGTTACATACTTGTAGACGGCGGTAGATCCAGTTTCG CGCTACGGGTACATCAGGTGGAGCAACTGGAAAACATGTTGATACCGGGA TGCAGCTGCTGTAGAACGAACCATGACAACGCTGCATTCGGCGGTCAATA AACCAGCATCCGTTTCTGGGGTGTGAACAGCCCTCGGCAGCAGCGACTGC TGAGTTTCTCTTCAAGAATCAAGTACGACGCCCGACGTAAGCCTATTCAA CTTGCAAGCGAAGAAGTGTAGACTCTAGAGCTAATTCTTCGGGCCGCGTT TCAACCTCGCCGTCTCCGCTACAGGTAGATGAGGGTGTCTACCTAGCTTT CGCGGGAATTTCCGCGGACGGTCGTGTCCTTGCCTCCAAGATAAGACTCG AATGCCAGAGCTACCGTTTCGGCATGGGGACGCCGCCAGGCGTTGGACAC ATCGCGAGATACGTGGGTGCGTGCAAAAATCCCGCCCTCCGCTTGACCAC CGTTGCTGAACGCTTTAGAAGGACGATGTGCGGTATCGTACCAAGCGTTT AGCGTCGCAGCATGTCCCGTTCTTTGGAATGAGAAAGCCCGTCACACCAT TTCGGAAATATTGGAATGCTAGCTATACAGTTGAAAGATCTTCATAGCTT CTTCATTCCACGGCCTCCCCACTCTAGACTACCGGAAATCTTCCAAGAAC TGGCATCCGATCCCTACTTTAACTACTGTGACTCTCACATTTCAGGAGAG CTCCAGCACAAGTACACGCGGACCGGCGGGGCGCGCCCATTCGGCGTGTC ATGCGTCGTTGCCGGCTTCGACGAGGACGCGTGTCCGAGGGTTTTTCGCT CGGAGCCGTCGGGAGCATTTGCGGAGTGGACGGCGTCCGCCGTCGGCAAG GGATCCGACAAGGCAGGTTTACGCGATCTTTCGATAGGTTTACTTTTGAT AATAATAAACGCTATAGTCTTCGATTATGGATACGTACCGTATGAGTACA GTGGCGCAACTGATACTGACGATTTGCAAGGCATCGAGTCGTCGAGGCCC CATGCTGTTGGATAGAAGGTGCCCGTCTCCTCGAGTTTCCGTTGCCGTTT TGTGTCGTTGAGCAACGAATCGATGTGTGGCTACTGGCAAACTCATTGGC CCTATTCGCCACGAAGTGAGATACTACTTAAAAAAAAGGGATGTTAAAAA AAGGTACTGCCCCTTCCTGACACACACCCTCGACTAAAAATTACTTTTGA ATCACGCGATCGAGGAGAAGCTCGACTTCTGCACGGATCATAACCCCTTT CTCCGTTCCTTCCCCTTGTCCCCCCGTCCGCATCGCCACAGGCATTGAGC AAACTCGAAGCCGTGCCAGAGCTCGGAGCTCTCGACTGGCGCGATTTGGC CATCGAAGCCGTACGCGCCACGCTCGCGAGCGGTGGTCGTGAGTGCGATG TCATTGTGCTTCGTCGCGAGACTGAAGCGACAGAGGGTGACGGGCAAATG GTGGTAGCGACGGACAGAAGGTGGAGGCGAAGGGGGAACGCGTGGATGCG AAGGTTTTCGGGTAGTATGGCAGCGGACGGGGGGATTTTACTTGAGGGTT CGGGAGGACAAGAGAGTAAACATGAGTACGACGACGATGAGGTTTTGTAG CCTAAGCGGTCAGCTGCTTGGCGGCGGGACAAAGGCGGGGATAGAAGAGG GGGGGGAGATAAGATCTCGATGTCGTATTTCGTGTGCAGTGTAGGTTGTC GATCCGGTGGGTCGGTTTAATTTTGTGGCGATGGCTCCAGCGTGTCGCTG GAGACGCGCCGCCGGCCATACTGAGGTTTAGACGTCGATTTAGAGGCGTG GGAATCCAGTGGATTTCGCGTCGGGACGTGGGTTTCGTCTCGGGCTCCTG ATGTATCACCCAAAAATATCGCCTGAAAAAACACGAGTAGGGTTTGAACA AGAAACAGAAGGCGTGCGGACAGACAAGCGTTCTCTACTTTTATCAGTTT CAACAAAAAAAGTGCGGCGGGCGTTTAAGGAACAAACGGCGTTTTCAATA ACGATTCTCAATGTCTGGAGCATTTCGACCGCTACACAAAACTGCTCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig796:4075..8172+

>mRNA_F-serratus_M_contig796.19242.1 ID=mRNA_F-serratus_M_contig796.19242.1|Name=mRNA_F-serratus_M_contig796.19242.1|organism=Fucus serratus male|type=CDS|length=2142bp|location=Sequence derived from alignment at F-serratus_M_contig796:4075..8172+ (Fucus serratus male)
ATGCACGCAACGATAGTGTCTTTAGTGATATCTGTGGGTCTTCAATCATC
TGTAGCTTCCGTTTATGACCGAGCTATAACGGTATTCTCTCCTGACGGCA
AACTGATACAGATGCACGCAACGATAGTGTCTTTAGTGATATCTGTGGGT
CTTCAATCATCTGTAGCTTCCGTTTATGACCGAGCTATAACGGTATTCTC
TCCTGACGGCAAACTGATACAGGTGTCATACGCTGAGGAAGCGGTGCAGC
GAGGGGGACTGGCGGTAGCCGCTTCCAACGGGCGGAACGCAATTGCAATA
TGCCTTGAGCGGCCGCCCGACGACGCTCAAGCTGGGCCAGATCACAGCAA
CAATGGCGCCGCCTCGGAGGTGTCATACGCTGAGGAAGCGGTGCAGCGAG
GGGGACTGGCGGTAGCCGCTTCCAACGGGCGGAACGCAATTGCAATATGC
CTTGAGCGGCCGCCCGACGACGCTCAAGCTGGGCCAGATCACAGCAACAA
TGGCGCCGCCTCGGAGGGGACAAAACACGAAGATGTCCTACAGCAGGTGG
AATCGACCGCTGATATCGAGGTGGGGAATGAGTATTCAGGCGGTGTTGGA
GGCGAGCACAGGTGGAGGCAGCGGACGCGCCGCGAAGCCTCAACGGTCAA
CGAAGTCGTGGGGTCGGGGATCTTAGACGACGCTAACAATCAAGATCGCA
AGCTCTGCGAGGGGACAAAACACGAAGATGTCCTACAGCAGGTGGAATCG
ACCGCTGATATCGAGGTGGGGAATGAGTATTCAGGCGGTGTTGGAGGCGA
GCACAGGTGGAGGCAGCGGACGCGCCGCGAAGCCTCAACGGTCAACGAAG
TCGTGGGGTCGGGGATCTTAGACGACGCTAACAATCAAGATCGCAAGCTC
TGCGAGGTAGATGAGGGTGTCTACCTAGCTTTCGCGGGAATTTCCGCGGA
CGGTCGTGTCCTTGCCTCCAAGATAAGACTCGAATGCCAGAGCTACCGTT
TCGGCATGGGGACGCCGCCAGGCGTTGGACACATCGCGAGATACGTGGGT
AGATGAGGGTGTCTACCTAGCTTTCGCGGGAATTTCCGCGGACGGTCGTG
TCCTTGCCTCCAAGATAAGACTCGAATGCCAGAGCTACCGTTTCGGCATG
GGGACGCCGCCAGGCGTTGGACACATCGCGAGATACGTGGGAGAGCTCCA
GCACAAGTACACGCGGACCGGCGGGGCGCGCCCATTCGGCGTGTCATGCG
TCGTTGCCGGCTTCGACGAGGACGCGTGTCCGAGGGTTTTTCGCTCGGAG
CCGTCGGGAGCATTTGCGGAGTGGACGGCGTCCGCCGTCGGCAAGGGATC
CGACAAGGAGAGCTCCAGCACAAGTACACGCGGACCGGCGGGGCGCGCCC
ATTCGGCGTGTCATGCGTCGTTGCCGGCTTCGACGAGGACGCGTGTCCGA
GGGTTTTTCGCTCGGAGCCGTCGGGAGCATTTGCGGAGTGGACGGCGTCC
GCCGTCGGCAAGGGATCCGACAAGGCATTGAGCAAACTCGAAGCCGTGCC
AGAGCTCGGAGCTCTCGACTGGCGCGATTTGGCCATCGAAGCCGTACGCG
CCACGCTCGCGAGCGGTGGTCGTGAGTGCGATGTCATTGTGCTTCGTCGC
GAGACTGAAGCGACAGAGGGTGACGGGCAAATGGTGGTAGCGACGGACAG
AAGGTGGAGGCGAAGGGGGAACGCGTGGATGCGAAGGTTTTCGGGTAGTA
TGGCAGCGGACGGGGGGATTTTACTTGAGGGTTCGGGAGGACAAGAGAGT
AAACATGAGTACGACGACGATGAGGTTTTGTAGGCATTGAGCAAACTCGA
AGCCGTGCCAGAGCTCGGAGCTCTCGACTGGCGCGATTTGGCCATCGAAG
CCGTACGCGCCACGCTCGCGAGCGGTGGTCGTGAGTGCGATGTCATTGTG
CTTCGTCGCGAGACTGAAGCGACAGAGGGTGACGGGCAAATGGTGGTAGC
GACGGACAGAAGGTGGAGGCGAAGGGGGAACGCGTGGATGCGAAGGTTTT
CGGGTAGTATGGCAGCGGACGGGGGGATTTTACTTGAGGGTTCGGGAGGA
CAAGAGAGTAAACATGAGTACGACGACGATGAGGTTTTGTAG
back to top