mRNA_F-serratus_M_contig796.19255.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig796.19255.1
Unique NamemRNA_F-serratus_M_contig796.19255.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig796.19255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig796contigF-serratus_M_contig796:167863..168552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.882768-CDS-F-serratus_M_contig796:167862..1679271622932361.882768-CDS-F-serratus_M_contig796:167862..167927Fucus serratus maleCDSF-serratus_M_contig796 167863..167927 +
1690964271.437348-CDS-F-serratus_M_contig796:167862..1679271690964271.437348-CDS-F-serratus_M_contig796:167862..167927Fucus serratus maleCDSF-serratus_M_contig796 167863..167927 +
1622932361.897113-CDS-F-serratus_M_contig796:168338..1685521622932361.897113-CDS-F-serratus_M_contig796:168338..168552Fucus serratus maleCDSF-serratus_M_contig796 168339..168552 +
1690964271.4487305-CDS-F-serratus_M_contig796:168338..1685521690964271.4487305-CDS-F-serratus_M_contig796:168338..168552Fucus serratus maleCDSF-serratus_M_contig796 168339..168552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig796.19255.1prot_F-serratus_M_contig796.19255.1Fucus serratus malepolypeptideF-serratus_M_contig796 167863..168552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig796.19255.1

>prot_F-serratus_M_contig796.19255.1 ID=prot_F-serratus_M_contig796.19255.1|Name=mRNA_F-serratus_M_contig796.19255.1|organism=Fucus serratus male|type=polypeptide|length=93bp
MHLACCILEQHVPSIKTRVSSRNFAKIDLLLNSVLQNNGHSHSATSASAS
SVPVRPYRAHPYAQTTKCLGEVTLASNHSEYWLLWALYAKFTE
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mRNA from alignment at F-serratus_M_contig796:167863..168552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig796.19255.1 ID=mRNA_F-serratus_M_contig796.19255.1|Name=mRNA_F-serratus_M_contig796.19255.1|organism=Fucus serratus male|type=mRNA|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig796:167863..168552+ (Fucus serratus male)
ATGCACTTGGCTTGCTGTATACTTGAGCAACACGTGCCTTCCATCAAAAC
CCGTGTCTCGTCGAGGTACGGATGCTTCTGGGTTATTTGCGCTAACTTTA
CATTATTCGTCACATTGTAGAAAAACGCGACCGTGGCTAGCCAGTTGAAC
GTCAATACCCTGCATGGAGAGTACGTCGTACGTTTTTCCCTTCCGGATAG
TGTTTTTCTACTTGTGGTCACGGGCTGGATTTTTGACAACAGCTTACGTG
AGACTTCAATTCAATTCAATTACAAAAAATCATGAGCGAGCGATCAAATG
TTATATCACGCCAGTCCACCGATATGGACCGTCTGTGATTCCAGAGCCAA
TAGTGTACCTTGCTGGAAATGTGGTGGACGATTCAAACATATTATCATGA
TCAACACACAATAACGTCATCCCACCCCCCCCCCCCCCCACTATCCACCG
TTTCCGGCGCACCATTGTACGGCAAGGAATTTTGCAAAAATTGACCTTCT
TCTGAACTCCGTGTTGCAGAACAATGGTCACAGTCACTCGGCAACGTCGG
CAAGCGCGTCTTCGGTACCGGTGCGCCCATATCGAGCGCATCCTTATGCG
CAGACCACGAAATGTCTTGGTGAAGTAACTCTTGCCTCAAACCACAGCGA
ATATTGGCTTTTGTGGGCCCTCTACGCCAAGTTTACCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig796:167863..168552+

>mRNA_F-serratus_M_contig796.19255.1 ID=mRNA_F-serratus_M_contig796.19255.1|Name=mRNA_F-serratus_M_contig796.19255.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig796:167863..168552+ (Fucus serratus male)
ATGCACTTGGCTTGCTGTATACTTGAGCAACACGTGCCTTCCATCAAAAC
CCGTGTCTCGTCGAGATGCACTTGGCTTGCTGTATACTTGAGCAACACGT
GCCTTCCATCAAAACCCGTGTCTCGTCGAGGAATTTTGCAAAAATTGACC
TTCTTCTGAACTCCGTGTTGCAGAACAATGGTCACAGTCACTCGGCAACG
TCGGCAAGCGCGTCTTCGGTACCGGTGCGCCCATATCGAGCGCATCCTTA
TGCGCAGACCACGAAATGTCTTGGTGAAGTAACTCTTGCCTCAAACCACA
GCGAATATTGGCTTTTGTGGGCCCTCTACGCCAAGTTTACCGAGGAATTT
TGCAAAAATTGACCTTCTTCTGAACTCCGTGTTGCAGAACAATGGTCACA
GTCACTCGGCAACGTCGGCAAGCGCGTCTTCGGTACCGGTGCGCCCATAT
CGAGCGCATCCTTATGCGCAGACCACGAAATGTCTTGGTGAAGTAACTCT
TGCCTCAAACCACAGCGAATATTGGCTTTTGTGGGCCCTCTACGCCAAGT
TTACCGAG
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