mRNA_F-serratus_M_contig7950.19239.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7950.19239.1
Unique NamemRNA_F-serratus_M_contig7950.19239.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7950.19239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7950contigF-serratus_M_contig7950:3675..4413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size257
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7950.19239.1prot_F-serratus_M_contig7950.19239.1Fucus serratus malepolypeptideF-serratus_M_contig7950 3677..4413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.4596133-CDS-F-serratus_M_contig7950:3676..38321622932361.4596133-CDS-F-serratus_M_contig7950:3676..3832Fucus serratus maleCDSF-serratus_M_contig7950 3677..3832 -
1690964271.239815-CDS-F-serratus_M_contig7950:3676..38321690964271.239815-CDS-F-serratus_M_contig7950:3676..3832Fucus serratus maleCDSF-serratus_M_contig7950 3677..3832 -
1622932361.4773126-CDS-F-serratus_M_contig7950:4011..40771622932361.4773126-CDS-F-serratus_M_contig7950:4011..4077Fucus serratus maleCDSF-serratus_M_contig7950 4012..4077 -
1690964271.2490275-CDS-F-serratus_M_contig7950:4011..40771690964271.2490275-CDS-F-serratus_M_contig7950:4011..4077Fucus serratus maleCDSF-serratus_M_contig7950 4012..4077 -
1622932361.4932406-CDS-F-serratus_M_contig7950:4380..44131622932361.4932406-CDS-F-serratus_M_contig7950:4380..4413Fucus serratus maleCDSF-serratus_M_contig7950 4381..4413 -
1690964271.266331-CDS-F-serratus_M_contig7950:4380..44131690964271.266331-CDS-F-serratus_M_contig7950:4380..4413Fucus serratus maleCDSF-serratus_M_contig7950 4381..4413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7950.19239.1

>prot_F-serratus_M_contig7950.19239.1 ID=prot_F-serratus_M_contig7950.19239.1|Name=mRNA_F-serratus_M_contig7950.19239.1|organism=Fucus serratus male|type=polypeptide|length=85bp
AQYRRQCSSKKIGCPFHITVSWNIRGGLPTIANASVMTHSHEPPKDTRPK
QMTSEEVKAQEESIKDFGKSNFSVASMCAFLEKDG
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mRNA from alignment at F-serratus_M_contig7950:3675..4413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7950.19239.1 ID=mRNA_F-serratus_M_contig7950.19239.1|Name=mRNA_F-serratus_M_contig7950.19239.1|organism=Fucus serratus male|type=mRNA|length=739bp|location=Sequence derived from alignment at F-serratus_M_contig7950:3675..4413- (Fucus serratus male)
GCACAATATCGGCGCCAGTGCAGTTCAAAAAAGGTGACGTTTGCTCCCAG
TACCATCTTGTTGTATGGAGGACGTGCCGCCCCACCACCTTGACGGGGTC
GGCTGCAGGGTCAAGGAAAGACGGGTTTGAAAGCGATGTATCCTGCTCAT
TGAATCAGTCTACAACCGCAGGCGGGCGATGAGTTGAGCAGTGAAATAAT
CTGAAAATCGCCCAACGCACCGTTAAAAATTGTACTGCTGTTGTGGATTT
ATGCCTTTCGCCTTCCACTTACAAGATGAACGGTCCAATGTACGCCTCCG
CACCCCCCCGGACGCCTGTCCCCCCTTGGTTGGCAGATTGGCTGCCCATT
CCACATCACCGTCAGCTGGAACATCCGGGGCGGCCTACCGACCATTGCCA
ACGTAAGTTTTATTGTCAAAAATAGACCACAAAGACACATGGGACGACCT
CTAATTTTGTCATTGTGTTGTAAGGTTCTACTCGCTCTCTTCGCCAGTTA
TACCCCGAGCATATGCCCGAATGCAGTTCTCGCAGCCCTCAACGGGCCCC
CAACATCGGTGTGTTGTTTGTATTGTTTCAGGCGTCTGTCATGACACACT
CGCACGAACCTCCGAAAGACACGAGGCCCAAGCAGATGACAAGCGAGGAG
GTGAAGGCGCAGGAGGAGTCGATTAAGGACTTTGGCAAGTCCAACTTTTC
CGTCGCGTCGATGTGCGCGTTCCTGGAGAAGGATGGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7950:3675..4413-

>mRNA_F-serratus_M_contig7950.19239.1 ID=mRNA_F-serratus_M_contig7950.19239.1|Name=mRNA_F-serratus_M_contig7950.19239.1|organism=Fucus serratus male|type=CDS|length=510bp|location=Sequence derived from alignment at F-serratus_M_contig7950:3675..4413- (Fucus serratus male)
GCACAATATCGGCGCCAGTGCAGTTCAAAAAAGGCACAATATCGGCGCCA
GTGCAGTTCAAAAAAGATTGGCTGCCCATTCCACATCACCGTCAGCTGGA
ACATCCGGGGCGGCCTACCGACCATTGCCAACATTGGCTGCCCATTCCAC
ATCACCGTCAGCTGGAACATCCGGGGCGGCCTACCGACCATTGCCAACGC
GTCTGTCATGACACACTCGCACGAACCTCCGAAAGACACGAGGCCCAAGC
AGATGACAAGCGAGGAGGTGAAGGCGCAGGAGGAGTCGATTAAGGACTTT
GGCAAGTCCAACTTTTCCGTCGCGTCGATGTGCGCGTTCCTGGAGAAGGA
TGGCGCGTCTGTCATGACACACTCGCACGAACCTCCGAAAGACACGAGGC
CCAAGCAGATGACAAGCGAGGAGGTGAAGGCGCAGGAGGAGTCGATTAAG
GACTTTGGCAAGTCCAACTTTTCCGTCGCGTCGATGTGCGCGTTCCTGGA
GAAGGATGGC
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