mRNA_F-serratus_M_contig7948.19238.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7948.19238.1
Unique NamemRNA_F-serratus_M_contig7948.19238.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 113 bits (282), Expect = 2.710e-26
Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            WRK  E E+    +   + +V R +D+ ++GSK +FK   G DG+VEKYK RLVAQGF QVE + Y E ++    +  IR+LLA+AA  D ++   D + AFL  ++++EIY+++P   +  + AV RL +A+ GL QA R W
Sbjct: 1010 WRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 104 bits (260), Expect = 2.350e-23
Identity = 59/143 (41.26%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W+     E+L  V+   Y +V R +D+ VVG K +F+   G DG++EKYK R+VA+GF QVE V YT+ ++     A IR LLA+AA  D ++   D + AFL  ++D+EI++  P  FQ     V +L +A+ GL QA R W
Sbjct:  297 WKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREW 439          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 99.0 bits (245), Expect = 2.430e-21
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W K  ++E+  + E   +T       K  + +K ++K  +  DG ++K+K RLV QGF Q   + Y + +S  A A+ +R LL++AA+K+ KL  FD   AFL   +++EIY++ PE F + S  V +LNR++ GL QA RCW
Sbjct:  257 WEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCW 399          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 98.6 bits (244), Expect = 3.480e-21
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W+     E+L   +   Y +V R +++ VVG K +F+   G DG VE+YK RLVAQGF QVE + Y+E ++  +  A IR +L +AA  D ++   D + AFL  D+D+EI++  P+      G V RL +A+ GL QA R W
Sbjct:  945 WKAACAEELLAFAKAEPYDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAALFDLEIDQMDVKSAFLNGDLDEEIFMAPPQGSSCPDGHVWRLRKALYGLRQASREW 1087          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 98.6 bits (244), Expect = 3.520e-21
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQ-EFSGAVGRLNRAINGLVQAGRCW 429
            WR     EM  + E   +  V   K+K VVG + +F   +G DGK+++YK RLVAQG+ Q   + Y E ++  A    IR+L+++AA  D KL   D + AFL   +++E+Y+++P  F+ E +  V RLN+++ GL Q+ R W
Sbjct:  864 WRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 97.8 bits (242), Expect = 4.520e-21
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W+     EML  V+   + +V   K++ VVGSK +F+   G +GK+EKYK RLVAQGF QV+ + YTE ++  A    IR LL++AA  D ++   D + AFL  D+D+EIY++ P       G V +L +++  L QA   W
Sbjct:    9 WKIACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEW 151          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 97.1 bits (240), Expect = 1.210e-20
Identity = 54/143 (37.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W+  E  E+   V+   +T+V + K + +V  K ++    G DG+V KYK RLVA+GF Q+E V Y E ++  +    IR LLA+AA  + ++   D + AFL  D+++EIY++ P  F+   G V +LN+++ GL QA R W
Sbjct:  984 WKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREW 1126          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 96.7 bits (239), Expect = 1.620e-20
Identity = 54/145 (37.24%), Postives = 89/145 (61.38%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEF--QEFSGAVGRLNRAINGLVQAGRCW 429
            W++  ++E   ++E   +  V+  K K VVGSK +FK    ++G V++YK RLVAQG+ Q E V Y+E +S       IR LLA++ AK+ ++   D + AFL+ ++++EIY+  P+ +  +E    V +L ++I GL Q+ RCW
Sbjct:  825 WKQATDSENNSLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCW 969          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY)

HSP 1 Score: 94.0 bits (232), Expect = 8.430e-20
Identity = 53/143 (37.06%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQEFSGAVGRLNRAINGLVQAGRCW 429
            W+  E  E+   V+   +T+V + K + +V  K ++    G DG+V KYK RLVA+GF Q+E V Y E ++  +    IR LLA+AA  + ++   D + AFL  D+++EIY++ P  F+   G V +LN+++ GL QA   W
Sbjct:  160 WKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASCEW 302          
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 94.0 bits (232), Expect = 1.450e-19
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 WRKGEETEMLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGFWQVECVHYTEKYSSTAAAA*IRMLLAMAAAKDGKLRHFDAEQAFLKADIDKEIYVEIPEEFQ--EFSGAVGRLNRAINGLVQAGRCW 429
            W+K  ++E   ++E   +  V    DK +VGS+ +FK     DG VEK+K RLVAQG+ Q E + Y E +S       IR LLA+A   D ++   D   AFL+ D+  EIY++ PE ++  E    V +L +++ GL Q+ RCW
Sbjct:  848 WKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCW 992          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7948.19238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK2.710e-2641.96Integrase catalytic domain-containing protein (Fra... [more]
A0A1C7MSU6_GRIFR2.350e-2341.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A146LHR9_LYGHE2.430e-2137.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SUY4_PYCCI3.480e-2139.86Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A151T5R4_CAJCA3.520e-2137.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6NNP3_9APHY4.520e-2139.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NZJ8_9APHY1.210e-2037.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9D6Q5_PARCT1.620e-2037.24Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A4S4KBB0_9APHY8.430e-2037.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT1.450e-1937.93Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7948contigF-serratus_M_contig7948:5674..6102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7948.19238.1prot_F-serratus_M_contig7948.19238.1Fucus serratus malepolypeptideF-serratus_M_contig7948 5698..5907 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.3777587-UTR-F-serratus_M_contig7948:5673..56971622932361.3777587-UTR-F-serratus_M_contig7948:5673..5697Fucus serratus maleUTRF-serratus_M_contig7948 5674..5697 +
1690964271.201358-UTR-F-serratus_M_contig7948:5673..56971690964271.201358-UTR-F-serratus_M_contig7948:5673..5697Fucus serratus maleUTRF-serratus_M_contig7948 5674..5697 +
1622932361.4135-UTR-F-serratus_M_contig7948:5907..61021622932361.4135-UTR-F-serratus_M_contig7948:5907..6102Fucus serratus maleUTRF-serratus_M_contig7948 5908..6102 +
1690964271.2269337-UTR-F-serratus_M_contig7948:5907..61021690964271.2269337-UTR-F-serratus_M_contig7948:5907..6102Fucus serratus maleUTRF-serratus_M_contig7948 5908..6102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.392686-CDS-F-serratus_M_contig7948:5697..59071622932361.392686-CDS-F-serratus_M_contig7948:5697..5907Fucus serratus maleCDSF-serratus_M_contig7948 5698..5907 +
1690964271.2123504-CDS-F-serratus_M_contig7948:5697..59071690964271.2123504-CDS-F-serratus_M_contig7948:5697..5907Fucus serratus maleCDSF-serratus_M_contig7948 5698..5907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7948.19238.1

>prot_F-serratus_M_contig7948.19238.1 ID=prot_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=polypeptide|length=70bp
MLGMVERLAYTQVARSKDKLVVGSKMLFKRNIGQDGKVEKYKCRLVAQGF
WQVECVHYTEKYSSTAAAA*
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mRNA from alignment at F-serratus_M_contig7948:5674..6102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7948.19238.1 ID=mRNA_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig7948:5674..6102+ (Fucus serratus male)
TGGCGGAAGGGTGAGGAGACAGAGATGCTTGGAATGGTCGAGAGATTAGC TTATACGCAGGTGGCTCGGTCGAAGGATAAACTCGTTGTTGGCTCAAAAA TGCTCTTCAAGCGAAACATCGGACAGGACGGCAAGGTCGAGAAGTATAAG TGCCGACTTGTTGCTCAAGGGTTCTGGCAGGTGGAATGTGTACACTACAC GGAAAAGTATTCGTCTACGGCAGCGGCCGCGTAAATCCGGATGCTTTTGG CAATGGCAGCGGCCAAGGACGGAAAGCTGCGCCATTTCGACGCGGAGCAG GCATTTTTGAAGGCGGATATTGACAAAGAAATATACGTTGAGATCCCTGA GGAGTTCCAGGAGTTTTCGGGTGCAGTGGGACGGCTGAACAGGGCCATTA ACGGACTCGTACAGGCGGGGAGGTGCTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7948:5674..6102+

>mRNA_F-serratus_M_contig7948.19238.1 ID=mRNA_F-serratus_M_contig7948.19238.1|Name=mRNA_F-serratus_M_contig7948.19238.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig7948:5674..6102+ (Fucus serratus male)
ATGCTTGGAATGGTCGAGAGATTAGCTTATACGCAGGTGGCTCGGTCGAA
GGATAAACTCGTTGTTGGCTCAAAAATGCTCTTCAAGCGAAACATCGGAC
AGGACGGCAAGGTCGAGAAGTATAAGTGCCGACTTGTTGCTCAAGGGTTC
TGGCAGGTGGAATGTGTACACTACACGGAAAAGTATTCGTCTACGGCAGC
GGCCGCGTAAATGCTTGGAATGGTCGAGAGATTAGCTTATACGCAGGTGG
CTCGGTCGAAGGATAAACTCGTTGTTGGCTCAAAAATGCTCTTCAAGCGA
AACATCGGACAGGACGGCAAGGTCGAGAAGTATAAGTGCCGACTTGTTGC
TCAAGGGTTCTGGCAGGTGGAATGTGTACACTACACGGAAAAGTATTCGT
CTACGGCAGCGGCCGCGTAA
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