mRNA_F-serratus_M_contig7946.19237.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7946.19237.1
Unique NamemRNA_F-serratus_M_contig7946.19237.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7946.19237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7946contigF-serratus_M_contig7946:6268..8449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size709
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7946.19237.1prot_F-serratus_M_contig7946.19237.1Fucus serratus malepolypeptideF-serratus_M_contig7946 6475..8382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.257039-UTR-F-serratus_M_contig7946:6267..64741622932361.257039-UTR-F-serratus_M_contig7946:6267..6474Fucus serratus maleUTRF-serratus_M_contig7946 6268..6474 +
1690964271.1498637-UTR-F-serratus_M_contig7946:6267..64741690964271.1498637-UTR-F-serratus_M_contig7946:6267..6474Fucus serratus maleUTRF-serratus_M_contig7946 6268..6474 +
1622932361.3254738-UTR-F-serratus_M_contig7946:8382..84491622932361.3254738-UTR-F-serratus_M_contig7946:8382..8449Fucus serratus maleUTRF-serratus_M_contig7946 8383..8449 +
1690964271.1918106-UTR-F-serratus_M_contig7946:8382..84491690964271.1918106-UTR-F-serratus_M_contig7946:8382..8449Fucus serratus maleUTRF-serratus_M_contig7946 8383..8449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932361.27696-CDS-F-serratus_M_contig7946:6474..65481622932361.27696-CDS-F-serratus_M_contig7946:6474..6548Fucus serratus maleCDSF-serratus_M_contig7946 6475..6548 +
1690964271.1589026-CDS-F-serratus_M_contig7946:6474..65481690964271.1589026-CDS-F-serratus_M_contig7946:6474..6548Fucus serratus maleCDSF-serratus_M_contig7946 6475..6548 +
1622932361.294597-CDS-F-serratus_M_contig7946:7838..79781622932361.294597-CDS-F-serratus_M_contig7946:7838..7978Fucus serratus maleCDSF-serratus_M_contig7946 7839..7978 +
1690964271.172842-CDS-F-serratus_M_contig7946:7838..79781690964271.172842-CDS-F-serratus_M_contig7946:7838..7978Fucus serratus maleCDSF-serratus_M_contig7946 7839..7978 +
1622932361.311295-CDS-F-serratus_M_contig7946:8161..83821622932361.311295-CDS-F-serratus_M_contig7946:8161..8382Fucus serratus maleCDSF-serratus_M_contig7946 8162..8382 +
1690964271.1826506-CDS-F-serratus_M_contig7946:8161..83821690964271.1826506-CDS-F-serratus_M_contig7946:8161..8382Fucus serratus maleCDSF-serratus_M_contig7946 8162..8382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7946.19237.1

>prot_F-serratus_M_contig7946.19237.1 ID=prot_F-serratus_M_contig7946.19237.1|Name=mRNA_F-serratus_M_contig7946.19237.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MVALMKRSVDQAAKMLSKRECISHRVWEIMYAFMFGAGRPANFLLKKKPV
DIVPDDAIRAFTPYLCRTKDEGEQGNEDGARYRDFAAGSSAAAESDRDQA
EELSSSTSRDMGRALLDPRGGNSADENVDDVDGCLDDDNVSVPD*
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mRNA from alignment at F-serratus_M_contig7946:6268..8449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7946.19237.1 ID=mRNA_F-serratus_M_contig7946.19237.1|Name=mRNA_F-serratus_M_contig7946.19237.1|organism=Fucus serratus male|type=mRNA|length=2182bp|location=Sequence derived from alignment at F-serratus_M_contig7946:6268..8449+ (Fucus serratus male)
AGGCAGCGGCGCAACAAAATTCCCGCAATACTACTACGCCATTCAGCCTT
CGCCCCGTCGTCATTCACAACAGTCTTCCGCTGGGGAGCCCTTTTCTCTC
CCGCGGATCACCGAAGAACGAGCGGTTCCGATGCCGGGTCTGCCACCACG
CCATCGGGCCCGGAAGGCGCTCCAAAGGATCCACCGGCCACGGAGCTGGC
TCCAGACATGGTGGCGCTGATGAAACGATCGGTGGACCAAGCAGCAAAAA
TGCTTTCGAAGCGGGAATGCATTTCACACAGGTGTTAACGTATTTTGAAG
GGTGTACTTCTTGTCTTTTTGCAAGCAAACTGAGGATTTAGTGCTCTGTT
ACTGTAAGTCGTTGAACGCCGGTGATACTTGTATGTTCTCACCGCTAGCA
CTTATCTGCCGCCTCCTAGTTTTTAAGGGCTTGTTGGAACTGATGGACGG
CCATTTGTGCAGGTATTTTCTTGTTTTCATTTTGTAGCGTTTTTAACCAT
CTTGGTTGTTTATTGGTAACGATACTTGTGTTCAGAAGTTTTCACCAGCA
CGTATAAATAACAGCAACCCGCAAAAAGCTCTGTTCCATCGGTTCGCGGC
GTGGATAGTATTGTCTTCCAAAGAAAAAACAGAACGTACCTAGACCTTCT
GAGCATCCCCCAGTCAGGAGGGAAAACATTTCAAAACTTAAAACTTTCAG
GTCGGATCAAAGGCTGCAAACAAAACGTCTCCATGGAATTTAAACGGGTT
CCCCTATGGTGGTAACATTGTGTCAACAGTAAAATATCGAGAGGAAACCC
AAGCTGTCGAGCAAGGTCAATATAAATATAAGTCCACTACGGTATGTATG
GCTGAACCCCCCCCCCCCCCCTTCCCCCTTCGCTTTTACCTTGGGGCAGT
GGGCACAATCGGATTCCGCATTCCCGCGTAGAGGATGCGCAGGGTATTAT
AGATGTGTACGACGCAGCGATGATGGAATTACGCAATTAGTTATGTCGAA
GCTTTCACTCAACTTGTATTCTGTAGCAGTATCCATCAGCTGTAGTCAAA
CGTCAGGCGTGTAAGTTCGATTCACGAGGGGTTGTAAGTCTCCGCTGTAA
AAATAACGCATAGAGTGCCCACCCCACCCTTTTGCTCTGTTCCCAGGTTT
TTGAGTCAGTGTTTTTCGCAGCCATGTCCCTGCTGCGCGTAGAGAGAGCA
AATGGACCTTTTCACGAGTGTGGCAATGATGGCGTGCCAGACTGCTGGCC
GGTAATGAAAAGTCAGATTGATGACGTATTCGGGTTGCAGAGAACATCGG
CACAGAGGACGGCGTGCGAGAGACGATTCGCTTCCCAGTGATTTGTGACT
CTCAAACCGATGGCGTCTACCATTAATTTGTTTCTGTTCCTAGGGTGAAC
ACTGATGGGTAGACTGCCTATCCCATTTCGCAATATATATTACCTGATAC
CCCACAGCCCCTGCCCCTCGGAATTTTGATTTCAACTGTTATCTTTTACC
ATAGTTCGCTACAGACACAGCTGATAGCGCTCTAACGTGTACCACACGCC
CGCCCTAACGCCGATCTGCAGGGTGTGGGAAATAATGTATGCGTTCATGT
TCGGCGCGGGGCGGCCGGCAAACTTCCTCTTGAAGAAAAAGCCAGTCGAC
ATCGTGCCGGACGACGCCATCCGCGCATTCACGCCGTACCTTTGTCGTAC
TAAGGATGAAGGTGTGTGCGGGACTTGTCGATTCTTCCTAGGCGTATAGG
GTTGAGAAAAATATCCGACGCGGACATCCTACTGCCGTTCAGCTTCAATT
TTCGCACTCAGTCTGTTTTCGATCTCCGCCTTCTAACCCATTACTAAGGC
GTCCTTCGTGGTTGTTATTCCCTCAAAACTTCATCACTGAACAGGCGAAC
AAGGTAATGAGGATGGCGCGAGGTATCGCGACTTCGCAGCTGGATCCAGC
GCGGCAGCAGAGTCTGATAGGGATCAAGCGGAAGAGTTATCATCCAGCAC
CAGCAGGGATATGGGGCGCGCTCTCTTAGATCCAAGGGGCGGCAACTCTG
CCGACGAGAATGTTGATGATGTCGATGGCTGTCTTGACGATGACAACGTT
TCTGTGCCGGATTAGGGCTGACGCGGAATGGTTGCCCGAATAATTCGTTA
ACAGCATCAGGCTGGCGTTCGAAGTGGCGACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7946:6268..8449+

>mRNA_F-serratus_M_contig7946.19237.1 ID=mRNA_F-serratus_M_contig7946.19237.1|Name=mRNA_F-serratus_M_contig7946.19237.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig7946:6268..8449+ (Fucus serratus male)
ATGGTGGCGCTGATGAAACGATCGGTGGACCAAGCAGCAAAAATGCTTTC
GAAGCGGGAATGCATTTCACACAGATGGTGGCGCTGATGAAACGATCGGT
GGACCAAGCAGCAAAAATGCTTTCGAAGCGGGAATGCATTTCACACAGGG
TGTGGGAAATAATGTATGCGTTCATGTTCGGCGCGGGGCGGCCGGCAAAC
TTCCTCTTGAAGAAAAAGCCAGTCGACATCGTGCCGGACGACGCCATCCG
CGCATTCACGCCGTACCTTTGTCGTACTAAGGATGAAGGGTGTGGGAAAT
AATGTATGCGTTCATGTTCGGCGCGGGGCGGCCGGCAAACTTCCTCTTGA
AGAAAAAGCCAGTCGACATCGTGCCGGACGACGCCATCCGCGCATTCACG
CCGTACCTTTGTCGTACTAAGGATGAAGGCGAACAAGGTAATGAGGATGG
CGCGAGGTATCGCGACTTCGCAGCTGGATCCAGCGCGGCAGCAGAGTCTG
ATAGGGATCAAGCGGAAGAGTTATCATCCAGCACCAGCAGGGATATGGGG
CGCGCTCTCTTAGATCCAAGGGGCGGCAACTCTGCCGACGAGAATGTTGA
TGATGTCGATGGCTGTCTTGACGATGACAACGTTTCTGTGCCGGATTAGG
CGAACAAGGTAATGAGGATGGCGCGAGGTATCGCGACTTCGCAGCTGGAT
CCAGCGCGGCAGCAGAGTCTGATAGGGATCAAGCGGAAGAGTTATCATCC
AGCACCAGCAGGGATATGGGGCGCGCTCTCTTAGATCCAAGGGGCGGCAA
CTCTGCCGACGAGAATGTTGATGATGTCGATGGCTGTCTTGACGATGACA
ACGTTTCTGTGCCGGATTAG
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