mRNA_F-serratus_M_contig793.19224.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig793.19224.1
Unique NamemRNA_F-serratus_M_contig793.19224.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig793.19224.1 vs. uniprot
Match: D7FXX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.540e-29
Identity = 64/81 (79.01%), Postives = 69/81 (85.19%), Query Frame = 1 
Query:  184 MASAVERMQMRLQDAIDRGNQASLGQAIYASKGVNGLKQLRRSAKARLKQLSADQNREMIGSYMPP-------EEPLTWRT 405
            MASAV+R+QMRLQ+A+D+GNQASLGQAI ASKGVNGLKQLRRSAKARLKQLSADQNR MIGS M         EEPLTWRT
Sbjct:    1 MASAVDRVQMRLQEAMDQGNQASLGQAIDASKGVNGLKQLRRSAKARLKQLSADQNRSMIGSRMQQQQHQQTTEEPLTWRT 81
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig793.19224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXX3_ECTSI8.540e-2979.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig793contigF-serratus_M_contig793:90025..93731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size405
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig793.19224.1prot_F-serratus_M_contig793.19224.1Fucus serratus malepolypeptideF-serratus_M_contig793 90025..90694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932358.373864-CDS-F-serratus_M_contig793:90024..901111622932358.373864-CDS-F-serratus_M_contig793:90024..90111Fucus serratus maleCDSF-serratus_M_contig793 90025..90111 -
1690964269.7224944-CDS-F-serratus_M_contig793:90024..901111690964269.7224944-CDS-F-serratus_M_contig793:90024..90111Fucus serratus maleCDSF-serratus_M_contig793 90025..90111 -
1622932358.3948758-CDS-F-serratus_M_contig793:90559..906941622932358.3948758-CDS-F-serratus_M_contig793:90559..90694Fucus serratus maleCDSF-serratus_M_contig793 90560..90694 -
1690964269.7342238-CDS-F-serratus_M_contig793:90559..906941690964269.7342238-CDS-F-serratus_M_contig793:90559..90694Fucus serratus maleCDSF-serratus_M_contig793 90560..90694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932358.4168062-UTR-F-serratus_M_contig793:90694..907321622932358.4168062-UTR-F-serratus_M_contig793:90694..90732Fucus serratus maleUTRF-serratus_M_contig793 90695..90732 -
1690964269.7470875-UTR-F-serratus_M_contig793:90694..907321690964269.7470875-UTR-F-serratus_M_contig793:90694..90732Fucus serratus maleUTRF-serratus_M_contig793 90695..90732 -
1622932358.4397464-UTR-F-serratus_M_contig793:93586..937311622932358.4397464-UTR-F-serratus_M_contig793:93586..93731Fucus serratus maleUTRF-serratus_M_contig793 93587..93731 -
1690964269.7614396-UTR-F-serratus_M_contig793:93586..937311690964269.7614396-UTR-F-serratus_M_contig793:93586..93731Fucus serratus maleUTRF-serratus_M_contig793 93587..93731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig793.19224.1

>prot_F-serratus_M_contig793.19224.1 ID=prot_F-serratus_M_contig793.19224.1|Name=mRNA_F-serratus_M_contig793.19224.1|organism=Fucus serratus male|type=polypeptide|length=74bp
MASAVERMQMRLQDAIDRGNQASLGQAIYASKGVNGLKQLRRSAKARLKQ
LSADQNREMIGSYMPPEEPLTWRT
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mRNA from alignment at F-serratus_M_contig793:90025..93731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig793.19224.1 ID=mRNA_F-serratus_M_contig793.19224.1|Name=mRNA_F-serratus_M_contig793.19224.1|organism=Fucus serratus male|type=mRNA|length=3707bp|location=Sequence derived from alignment at F-serratus_M_contig793:90025..93731- (Fucus serratus male)
CGATGGAGTGATTCAGTCAGAACGCACCTCCCTGGGACTCAGCCTTGGAC
TTGCAAATAACGACCTTCCGAAGGAAAGTTTGTGACATCCGGTCCGGCAG
GCTTTACTCTAACGCCAAGGTTTTTTCGCGTTTTCCACAGGAAAGGTGAG
TACGGTCAGTCCACAATGATGCATCATCATCCAATCGCAATCTCCCAACG
GTCTAAATAATTCCTTGTGCCCAGCGAGCTTCGGTTACGAGGGGAACCAA
TAGGATCCAATGCCATTGCCTCCAAGGGGCTAGTTTTAGCCATCAATGCT
TGGGGCGAGGGCATCTTGACTGGCGAGGTGGCGGGACGTGGGATCATGGT
CCGGAGTGTTGTTTTGAACGATTTCTACCAACAACGAAGCGGGTATCTTC
GCGTACTCTCTCTCTCGTAGTGTGTGTGTGTTTGTGTTTCTTCCCATCCA
TTCTGGACATCAATGGACGTACCAGCCGGGGTCACACAGGAGGAAGGTCA
CACCGGATTTCTCATCCACCTTCCTTCTGCGGTGCGTGCCTTCATTTTTA
TCGCGAGAAGGATTCGGCCATTCCTTTCCCTCGTCGACCGTAAAGTCGAA
TTTTGTGTACTACAGTTATAGTACCACGATTTAATCGTTCTCCACCCGTT
GGGTATTTTTAGTTTTGTTTTTAGTTTTTTGTGAGAAAAGTCCCGTTTGC
CGGGATCGAACTCACGTCCCAACGTGTCAGAGGGTTACGAGGTACCTCTG
AGCTACCGGGGCAACCGGCCGTAGGAATGGAGAAAATGCAACGGTGCAGT
GAGGTGCATTTAGTCTGTTTTTTTTCGTATGTCTATGGATTTCCCGCGTC
CAGAGAGAGGGCTGAGAAGGAGCCTGAGAAGAACGTAGCGGATCTTGTTA
CGACGAAGTTTTTCGTCGCAATTGTATTGGTAGTATAATAGTTATTAATC
GTGGATTCGACAGATCAAACAGGGTAGTCCGCCTTTCGAATATCGCCCTA
AAAATTACTATTAATATTAATACTATTAATAGCCGTAGATAGTTTATCTG
ATATGAAATAGATACACACCACGAGCTGCGACATCTATGAGTCGCCGCCC
CAGCTGCAATAACACCTGACACTGGCGCATCCGTTCGTTTTCCTTTGTTT
CTCAATCCGCTCGTACTTGATTTACTTTCAATACGGAATCTGTACACTGT
ACCGTGGGCTAGAATAACAGTTACTAGTAACATGTGATGAGCCTCGACCA
GCCACGACAGACAGTCCTGTGTGGCGAAGTCCATCCCCCCTTTTTTGTAG
TCTTTCACGCTTCGGACGAAACACCTGTCGCCGTTTCCAGCGCCCGCGAG
GGGTTGTCTTCGGAGACCCAACCCCCAAGGAGATCTTTGCACACGGCATA
CTGTCGCACTATTTCTTCGCCAGCGGCCAACAAACAAAAAATATCTCCTC
CGTACCAGGTATAAAATTGCGATAAGATACTTTGTGCGAGTGATAATAAT
CCATGATCTTCTTCAGCACGACAACGAGTAGTCGGTTGATGCGACTTAAC
TTTAAACACAAAGTTCAAGCCACAGAATATTCATTTTCCCTGTTCAGCTG
ACCACGAGCAGGATTGGCAACCTTACCTCTGGTTGATCCATAATCTTGCT
ATAAGTGTGAGGATTATGACCAAACATACACAGTAAAGCAGCAGCTCTAT
CACACTACTACTACTGTATTTAGTATACAAGGACTGTCTGGTGCGATTAC
AGTACAGTATACTAGTGCTCTGTTTTTTTTAGTTAGGGCAACCGCCCGGC
ACAACATCATGGTATGATAGTAAAAAAGCGGCAGCGACAAGTAGCGCAAG
AAATAAAAATAACAACCCGAGAACGCCTATTGTACTATAATAGAGGAAAG
GTATCATCACGATGTAGTAATAGCGTGAAGCGCAACTATTTAGTTACTAT
TAATACTATTAGTGAGGCGCGGAGTCAAAAACAGATAGATCATCCACCAT
CCATCATCAAGATTCTCGACGCCGATCGAAAGAGGAGAATAGAGTAGTCG
ATCGAAAACAAGCCACAGAACAAACGGGCGAAAGACATACTACGAGGCGG
GTGCTACAGTATAATTTGATATATTCTCTGAACGAGCATATTATAATGGG
ATGGGGAGGGGGGGGGGAGGGGGGGTTGGTGCGCTGCCAGATTTTCTCTT
TTTGTTTCTTTTTCGCTGTTCAGCAGACCACGAGCGGGATTGGCCACCAC
CACCGTATAATAACTTCAAGTGTCCATTTTCTGTCTGTTTTTGCGCGGGT
ACCCTGGGCCCTTATTTGGAAACAAAATATGGATACCTGCATAGTTTGAT
ATCTTTTGATTGATGATGACGATCCGGTGACTACGTTGACATTTTTTTCA
TTTCTTGATTTCTTTCTCTCTCAGGCAATGCCACCAAAACCCCTAAGCAT
TCAGAAAGTCCTCTGCCCGTGCTTGTAGTATGTGTTCCCGCCGCGTTTGT
GCCCGTCGTCCGGGTTGTTGCGGAGGACGATGATAGCAAACGTACCGGCC
AAATCGATTCCGTCGAGGAGGGTTTACGTGTCTTGGTGTAATCCCTAAAC
AAGATGCATCAAGATGTATGCGCCGACGAGAAGTGATTCAGGCTTTGGTC
AGAATTCGTCGACATCGGCACGAGCCAGGGTGTATATAATTTTTGCAATG
AGTGACTCTGCAGCCACCAAGATGGGGAATAATAAACAATACAGGCGCCG
AGGAAGCGATCCTCCCCATCTCTTACTCCTCCGATAAGCTATACCCCCGA
TGACTGTCGCATCTTCGTAGTACAAATTTGGACGTATCGAGGAAGTAAGT
CGTGGGTTGCGGATGAAAAAGAAGACCGTATCTTGGGTTGCGATCGAACG
CGAGAGCATGCCGAACCAGTATCACAACATCGCTCGATCTGGAATAGCAT
CGTTACACAGCAGCTCACACCACCCATGCTTTACGCGCACCGGAGACAGG
TCCCAGGCAGAAGTGGGCCAGGAAAAGGTTGAAGGCCATGGCGTCCGCGG
TGGAAAGGATGCAGATGCGCCTGCAGGATGCGATCGATCGGGGGAATCAA
GCGTCGCTGGGCCAGGCTATTTACGCTTCCAAGGGTGTGAACGGTCTGAA
GCAGTTGCGCCGGTCCGCGAAGGTGAAGCGAGATTGTTTGCCAAGCCAAT
GTCTTTCCCTGTTACCGAGGAAGCAAACGCGAATTTGCGCCTTTAAATAG
GATGTTGTTTCAGCAACATCGGAGTACGTGCTAGACGTGTCGTGGGGTTT
TCTTTTCTGGGTGTAGTGTGTAAAGGCGTGACGATACATGGTGTTCCGAG
AAGTCAGCGCACAATGAGGAGTGCGGTGGCATGGGTTGAGGGGGGAAGGG
TGGACAAAAGGTAGAGTGATACGTGCGTGCTTGGACTTGGAGGGGCAAGG
TGACTTAGTAAATTCTCCATCCCGGGGACTCGTCACAATATATGGCGGTC
GAATGGTCGTTCACACGCAGCCTATAGCTCGAGTAGCGAGTTAGGCGATC
AACAATTTATTGTGATGGGTTTTAAAGTCGCTCGCCTTTTGAACGCGTTC
CACTCGGGGGCCATTCGTAGGCCCGTCTGAAACAGCTGTCGGCGGATCAG
AACCGGGAGATGATCGGGTCTTACATGCCTCCGGAGGAACCTTTGACCTG
GAGAACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig793:90025..93731-

>mRNA_F-serratus_M_contig793.19224.1 ID=mRNA_F-serratus_M_contig793.19224.1|Name=mRNA_F-serratus_M_contig793.19224.1|organism=Fucus serratus male|type=CDS|length=444bp|location=Sequence derived from alignment at F-serratus_M_contig793:90025..93731- (Fucus serratus male)
ATGGCGTCCGCGGTGGAAAGGATGCAGATGCGCCTGCAGGATGCGATCGA
TCGGGGGAATCAAGCGTCGCTGGGCCAGGCTATTTACGCTTCCAAGGGTG
TGAACGGTCTGAAGCAGTTGCGCCGGTCCGCGAAGATGGCGTCCGCGGTG
GAAAGGATGCAGATGCGCCTGCAGGATGCGATCGATCGGGGGAATCAAGC
GTCGCTGGGCCAGGCTATTTACGCTTCCAAGGGTGTGAACGGTCTGAAGC
AGTTGCGCCGGTCCGCGAAGGCCCGTCTGAAACAGCTGTCGGCGGATCAG
AACCGGGAGATGATCGGGTCTTACATGCCTCCGGAGGAACCTTTGACCTG
GAGAACTGCCCGTCTGAAACAGCTGTCGGCGGATCAGAACCGGGAGATGA
TCGGGTCTTACATGCCTCCGGAGGAACCTTTGACCTGGAGAACT
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